BAC Information

Click to search

BAC

Clone NameB6Ng01-164F05
Chromosome2 (Build37)
Map Location 162,414,129 - 162,547,270
singlet/doubletdoublet
Overlap genePtprt, LOC100043895, LOC100043896
Upstream genenone
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164F05.bB6Ng01-164F05.g
ACCDH956681DH956682
length6361,023
definitionDH956681|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F05, 5' end.DH956682|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,414,129 - 162,414,764)(162,546,246 - 162,547,270)
sequence
gaattctgtcctgttttataagccctgaagaatgaaaaggaatctcctgg
ttcctggttccattgtcggacttttcagtggctttttactaggaaaaaac
aaacaaaacaaaacaaaacaaaaaaacaaaagcaaacaaacaaaaaaacc
tttgcctctactcttacggatcctatggtgatgccatttacaggatatcc
accgagtcctgcacagttttcccagtatccgacatggaacagtggagtgt
ttcttccaagttcaaaaatgctccacagactaaatagcgatatcggaaaa
ccaggcaccaggagagccaggcttacatccccagcaagaccgtgttgaga
agggtaaccaacattagaaaactccccctggcttaataccctcctcatcc
ctcagctaagactagtagctgtgccctcaacagccatcagagatgcgtag
tgacctaatgagaaaataatgaaaatcacaaacccaattgtctaaagggt
ttgcctacgttggcttccagaactgacacgtgggtacctccctccctctc
atttccatccaggactagatgttaaggaatggttgccctgaacgttgcat
tttacttctgtaatggaaaagaggggtgtgtgtgtg
gaattcccatttccagtagaccaaaggcagggaaatctgaggtattgaat
catagggaatacagaagcgatgagaagtctttggaagctctagggcataa
agaccacccaagaaagggcagggtcacagctccaacctaagttctgcgct
cactcacgctggagcctgcgctcactgagtgtgtggtgggcacagatggc
ctaatgtattgaatctggttacagacacaatattctatatgtccattatg
catttatcacacacatagaaattcaggaaatttgtacaagtattgtacat
ccttgcatctgatacacacctaccttttgccctcattctaaacacactta
ctgacgagaacttatgcacacaactcagttctggaaactagagatgatga
actgcacaggactggggcccagcttcagtgatctcacagcctcagagaag
ggactgtagtgtggccagtgcatgttatgggtaactcaggaaatctctgt
aagtctggatcacagaagggccccactgtctatctttcccaagaagaggg
tggctgagcctggctttgaagggtgtgtaggaggtttataggtggaaaat
gggaggccagtagcttagtgttaaagctctgagcaaagactcaggtgtct
agtgttgttttgggtccagtgttgtttccaggccaaatccattgtctcag
gtgtggtggggtctgtgttttgtttcctcttttacctcatttactgatat
ttacatctggagtctctctgtgcttgtccttgggtctcagaggcatttct
atccctgtagagctgctaggcagggaacaagtggccctgatttttggagt
ccctcttgccacaagtctctggtattgtgaacaggaattcaagctcttag
agggtcttagagtctagagacagtggaaagaccaagctttcagctctgtc
ttggcactgaccccttgggtgacttctgttcttcaaacctcagttcttca
gagtaaataggagcatttgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162414129_162414764
seq2: B6Ng01-164F05.b_47_682

seq1  GAATTCTGTCCTGTTTTATAAGCCCTGAAGAATGAAAAGGAATCTCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTGTTTTATAAGCCCTGAAGAATGAAAAGGAATCTCCTGG  50

seq1  TTCCTGGTTCCATTGTCGGACTTTTCAGTGGCTTTTTACTAGGAAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTCCATTGTCGGACTTTTCAGTGGCTTTTTACTAGGAAAAAAC  100

seq1  AAACAAAACAAAACAAAACAAAAAAACAAAAGCAAACAAACAAAAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAAAAACAAAAGCAAACAAACAAAAAAACC  150

seq1  TTTGCCTCTACTCTTACGGATCCTATGGTGATGCCATTTACAGGATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTACTCTTACGGATCCTATGGTGATGCCATTTACAGGATATCC  200

seq1  ACCGAGTCCTGCACAGTTTTCCCAGTATCCGACATGGAACAGTGGAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTCCTGCACAGTTTTCCCAGTATCCGACATGGAACAGTGGAGTGT  250

seq1  TTCTTCCAAGTTCAAAAATGCTCCACAGACTAAATAGCGATATCGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAGTTCAAAAATGCTCCACAGACTAAATAGCGATATCGGAAAA  300

seq1  CCAGGCACCAGGAGAGCCAGGCTTACATCCCCAGCAAGACCGTGTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACCAGGAGAGCCAGGCTTACATCCCCAGCAAGACCGTGTTGAGA  350

seq1  AGGGTAACCAACATTAGAAAACTCCCCCTGGCTTAATACCCTCCTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAACCAACATTAGAAAACTCCCCCTGGCTTAATACCCTCCTCATCC  400

seq1  CTCAGCTAAGACTAGTAGCTGTGCCCTCAACAGCCATCAGAGATGCGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAAGACTAGTAGCTGTGCCCTCAACAGCCATCAGAGATGCGTAG  450

seq1  TGACCTAATGAGAAAATAATGAAAATCACAAACCCAATTGTCTAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAATGAGAAAATAATGAAAATCACAAACCCAATTGTCTAAAGGGT  500

seq1  TTGCCTACGTTGGCTTCCAGAACTGACACGTGGGTACCTCCCTCCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTACGTTGGCTTCCAGAACTGACACGTGGGTACCTCCCTCCCTCTC  550

seq1  ATTTCCATCCAGGACTAGATGTTAAGGAATGGTTGCCCTGAACGTTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATCCAGGACTAGATGTTAAGGAATGGTTGCCCTGAACGTTGCAT  600

seq1  TTTACTTCTGTAATGGAAAAGAGGGGTGTGTGTGTG  636
      ||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTGTAATGGAAAAGAGGGGTGTGTGTGTG  636

seq1: chr2_162546246_162547270
seq2: B6Ng01-164F05.g_68_1090 (reverse)

seq1  TGCACAAATTGCTCCTATTTTACTGCTGAAGAAACTGAGGTTTGAAGAAC  50
      ||| |||| |||||||| |||||| |||||| ||||||||||||||||||
seq2  TGCCCAAA-TGCTCCTA-TTTACT-CTGAAG-AACTGAGGTTTGAAGAAC  46

seq1  AGAAGTCACACAGGGGGTCAGTGCCAAAGACAGAGCCTGAAGCCTGGTCC  100
      ||||||||| || |||||||||||| ||||||||||   |||| ||||| 
seq2  AGAAGTCACCCAAGGGGTCAGTGCC-AAGACAGAGCTGAAAGCTTGGTCT  95

seq1  TTCCAACTGTCTCTGGACTCTAAGGACCTCTAAGAGC-TGGATTCCTG-T  148
      |||| ||||||||| |||||||||  ||||||||||| || ||||||| |
seq2  TTCC-ACTGTCTCTAGACTCTAAGACCCTCTAAGAGCTTGAATTCCTGTT  144

seq1  CAC-ATACCAGAGACTTGTGGCAAGAAGGACTCCAAAAATCAGGACCACT  197
      ||| |||||||||||||||||||||| ||||||||||||||||| |||||
seq2  CACAATACCAGAGACTTGTGGCAAGAGGGACTCCAAAAATCAGGGCCACT  194

seq1  TGTTCCCTGCCTAGCAGCTCTAACAGGGATAGACTTGCCTCTGAGACCCA  247
      ||||||||||||||||||||| |||||||||||  |||||||||||||||
seq2  TGTTCCCTGCCTAGCAGCTCT-ACAGGGATAGAAATGCCTCTGAGACCCA  243

seq1  AGGACAAGCACAGAGAGACTCCAGATGTAAATATCAGTAAATGAGGT-AA  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGACAAGCACAGAGAGACTCCAGATGTAAATATCAGTAAATGAGGTAAA  293

seq1  AGAGGAAAC-AAACACAGACCCCACCACACCTGAGACAATGGATTTGGCC  345
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACAAAACACAGACCCCACCACACCTGAGACAATGGATTTGGCC  343

seq1  TGGAAACAACACTGGACCCAAAACAACACTAGACACCTGAGTCTTTGCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAACACTGGACCCAAAACAACACTAGACACCTGAGTCTTTGCTC  393

seq1  AGAGCTTTAACACTAAGCTACTGGCCTCCCATTTTCCACCTATAAACCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAACACTAAGCTACTGGCCTCCCATTTTCCACCTATAAACCTC  443

seq1  CTACACACCCTTCAAAGCCAGGCTCAGCCACCCTCTTCTTGGGAAAGATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACCCTTCAAAGCCAGGCTCAGCCACCCTCTTCTTGGGAAAGATA  493

seq1  GACAGTGGGGCCCTTCTGTGATCCAGACTTACAGAGATTTCCTGAGTTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGGCCCTTCTGTGATCCAGACTTACAGAGATTTCCTGAGTTAC  543

seq1  CCATAACATGCACTGGCCACACTACAGTCCCTTCTCTGAGGCTGTGAGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACATGCACTGGCCACACTACAGTCCCTTCTCTGAGGCTGTGAGAT  593

seq1  CACTGAAGCTGGGCCCCAGTCCTGTGCAGTTCATCATCTCTAGTTTCCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGCTGGGCCCCAGTCCTGTGCAGTTCATCATCTCTAGTTTCCAG  643

seq1  AACTGAGTTGTGTGCATAAGTTCTCGTCAGTAAGTGTGTTTAGAATGAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTTGTGTGCATAAGTTCTCGTCAGTAAGTGTGTTTAGAATGAGG  693

seq1  GCAAAAGGTAGGTGTGTATCAGATGCAAGGATGTACAATACTTGTACAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTAGGTGTGTATCAGATGCAAGGATGTACAATACTTGTACAAA  743

seq1  TTTCCTGAATTTCTATGTGTGTGATAAATGCATAATGGACATATAGAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAATTTCTATGTGTGTGATAAATGCATAATGGACATATAGAATA  793

seq1  TTGTGTCTGTAACCAGATTCAATACATTAGGCCATCTGTGCCCACCACAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGTAACCAGATTCAATACATTAGGCCATCTGTGCCCACCACAC  843

seq1  ACTCAGTGAGCGCAGGCTCCAGCGTGAGTGAGCGCAGAACTTAGGTTGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGAGCGCAGGCTCCAGCGTGAGTGAGCGCAGAACTTAGGTTGGA  893

seq1  GCTGTGACCCTGCCCTTTCTTGGGTGGTCTTTATGCCCTAGAGCTTCCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACCCTGCCCTTTCTTGGGTGGTCTTTATGCCCTAGAGCTTCCAA  943

seq1  AGACTTCTCATCGCTTCTGTATTCCCTATGATTCAATACCTCAGATTTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTCATCGCTTCTGTATTCCCTATGATTCAATACCTCAGATTTCC  993

seq1  CTGCCTTTGGTCTACTGGAAATGGGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  CTGCCTTTGGTCTACTGGAAATGGGAATTC  1023