BAC Information

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BAC

Clone NameB6Ng01-164O16
Chromosome2 (Build37)
Map Location 111,048,470 - 111,209,712
singlet/doubletdoublet
Overlap gene4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283
Upstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301
Downstream geneOlfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O16.bB6Ng01-164O16.g
ACCDH957117DH957118
length1,1961,132
definitionDH957117|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O16, 5' end.DH957118|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,048,470 - 111,049,674)(111,208,574 - 111,209,712)
sequence
gaattcaaatctgacaaattaagaaaagtagtggaaacatagtttttaat
tttgtattttatgatttctttctacagacctcatagattcagagctgtaa
ccaaattagaatataaattagagtgcaaataagctgcagataatcatgaa
tgtggtccaacttgatttcatgggtatgttctatcttcactgcagaagaa
actaccctataaatgggactaaaggaaaactctgctctctcagaaacact
tgctccaggccctaccatagctgaggacatgggtagatagctctgccatt
gccattccaagtcaacacaggaaatcttaagaaatattgggattcacaac
aagacattttagggtgcagacataaaaggacccacaggtggcttaaaatt
tagaattttaaacacctgctcatttccttcattttcgttctgttctacat
gtagcttttcacctttctcctcctcttcagtgctctcctaacattcctta
actgtgaaaatactcacaggacactcatacacctagtactaaccacaatt
gaaaatattttcttttaacttcctataacaaaaagaaagtcctacagcca
tttaatatactgtgtgattcaagaaacattacgtggataattttaatggc
aagaaaataatttctttccccttgttacattttatctcagtatttgtgat
gtgtattaatatatgagttgtctatgcatggtataggcatatgtgtcaat
gcagttgcatgcctgtgtaagcacaaataggccagaagaggacaacagga
aatcttgactatactacctacctacctacctacctacctacctacctacc
tacctacctacctattttattcccataagacaagaactatcagagtttgg
agctggacaagtagtcagaatatctcagtgatgcctatgacactttctcc
aaagtgctgagttactgatacacacaaggaatgcacactgtttatgtgac
tcttagttatctgaacataagtcttcatgctttcacagcaaacactgttt
cctttccaagaatcaacttcccagcctcctgtctgcttgctctttagttt
taaattttaattaaaatatacttcattttccccttcatttcttcccacag
gcccctcccatgttcggaacttagctctttacattctatcgccact
gaattcacatgtgatttatcagcttctttatggcatttttaatatcttta
tttctcagtgtgtagatggctggattaaggagaggtgtgatgactgagta
aaacacagcaagaaacttgtcaacccaggtgatgctaactggccacagat
agatgaaaatgactggcccaaagaacagcagaaccactatgatatgggat
gtgcatgtagatagggcctttgatgaaccatctttagagtgaagttgaac
agttaatagaatgtaagtataagatatcagtaagaggatgaaacaagttg
ttgccaaaacaccactgtcagcatttattagaatttccagtgtatcagta
ttcatgcaggctaatttcatcaccaaaggaatatcacagaaaaagctgtc
tatcactctaggtccacagaaaggtagttccaaaaccagaataagttgac
tcatggcatgtataaagccaatggtccacgagatcacaacgagccagatg
cacttctgtctgtccatgatgctgctgtagtggagtggcctgcagatggc
cacataccggtcataggccattgttacaagaagcaccatctcacctcctc
caaagaagtgcacacagaggatctggctcatgcagcccccaaaggaaatg
gttttgttatcttttaggaggtcagttatcagtttgggggtggtaactga
ggaaaggcagaagtcaataaatgatagattagctaacagaaagtacatgg
gagaatggagatgatgatcaatgatgatcaatatcacaacaaagaggttg
cctaccacagccattagatagaggatggaaaatggcagcagaaggaagag
ctgtagttcctttgaagcacaaagtccctgaaaataaactcagacaccac
agtctggtttccttcttcatttactacaaagtgttctaatgggtgaaaga
gacaaagttgaactaacaattcctgaaatagaaacaatacttaacgtttg
gtcaaataagcaccaaaaaatacaaattaatggtcttacattatttccac
tcaggttcaaatacttcctatggtggcatactttttctagtcaggaaatg
ttccctaatacaggaaatatacatctgattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111048470_111049674
seq2: B6Ng01-164O16.b_47_1242

seq1  GAATTCAAATCTGACAAATTAAGAAAAGTAGTGGAAACATAGTTTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTGACAAATTAAGAAAAGTAGTGGAAACATAGTTTTTAAT  50

seq1  TTTGTATTTTATGATTTCTTTCTACAGACCTCATAGATTCAGAGCTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTATGATTTCTTTCTACAGACCTCATAGATTCAGAGCTGTAA  100

seq1  CCAAATTAGAATATAAATTAGAGTGCAAATAAGCTGCAGATAATCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAGAATATAAATTAGAGTGCAAATAAGCTGCAGATAATCATGAA  150

seq1  TGTGGTCCAACTTGATTTCATGGGTATGTTCTATCTTCACTGCAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCAACTTGATTTCATGGGTATGTTCTATCTTCACTGCAGAAGAA  200

seq1  ACTACCCTATAAATGGGACTAAAGGAAAACTCTGCTCTCTCAGAAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCTATAAATGGGACTAAAGGAAAACTCTGCTCTCTCAGAAACACT  250

seq1  TGCTCCAGGCCCTACCATAGCTGAGGACATGGGTAGATAGCTCTGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGCCCTACCATAGCTGAGGACATGGGTAGATAGCTCTGCCATT  300

seq1  GCCATTCCAAGTCAACACAGGAAATCTTAAGAAATATTGGGATTCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCAAGTCAACACAGGAAATCTTAAGAAATATTGGGATTCACAAC  350

seq1  AAGACATTTTAGGGTGCAGACATAAAAGGACCCACAGGTGGCTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTTAGGGTGCAGACATAAAAGGACCCACAGGTGGCTTAAAATT  400

seq1  TAGAATTTTAAACACCTGCTCATTTCCTTCATTTTCGTTCTGTTCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTAAACACCTGCTCATTTCCTTCATTTTCGTTCTGTTCTACAT  450

seq1  GTAGCTTTTCACCTTTCTCCTCCTCTTCAGTGCTCTCCTAACATTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTCACCTTTCTCCTCCTCTTCAGTGCTCTCCTAACATTCCTTA  500

seq1  ACTGTGAAAATACTCACAGGACACTCATACACCTAGTACTAACCACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAAATACTCACAGGACACTCATACACCTAGTACTAACCACAATT  550

seq1  GAAAATATTTTCTTTTAACTTCCTATAACAAAAAGAAAGTCCTACAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTTCTTTTAACTTCCTATAACAAAAAGAAAGTCCTACAGCCA  600

seq1  TTTAATATACTGTGTGATTCAAGAAACATTACGTGGATAATTTTAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATACTGTGTGATTCAAGAAACATTACGTGGATAATTTTAATGGC  650

seq1  AAGAAAATAATTTCTTTCCCCTTGTTACATTTTATCTCAGTATTTGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAATTTCTTTCCCCTTGTTACATTTTATCTCAGTATTTGTGAT  700

seq1  GTGTATTAATATATGAGTTGTCTATGCATGGTATAGGCATATGTGTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAATATATGAGTTGTCTATGCATGGTATAGGCATATGTGTCAAT  750

seq1  GCAGTTGCATGCCTGTGTAAGCACAAATAGGCCAGAAGAGGACAACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCATGCCTGTGTAAGCACAAATAGGCCAGAAGAGGACAACAGGA  800

seq1  AATCTTGACTATACTACCTACCTACCTACCTACCTACCTACCTACCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGACTATACTACCTACCTACCTACCTACCTACCTACCTACCTACC  850

seq1  TACCTACCTACCTATTTTATTCCCATAAGACAAGAACTATCAGAGTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCTACCTATTTTATTCCCATAAGACAAGAACTATCAGAGTTTGG  900

seq1  AGCTGGACAAGTAGTCAGAATATCTCAGTGATGCCTATGACACTTTCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACAAGTAGTCAGAATATCTCAGTGATGCCTATGACACTTTCTCC  950

seq1  AAAGTGCTGAGTTACTGATACACACAAGGAATGCACAACTGTTTATGTGA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGTGCTGAGTTACTGATACACACAAGGAATGCAC-ACTGTTTATGTGA  999

seq1  CTC-TAGTTATCTGAACATAAGTCTTCATGCTTTCACAGCAAACACTGTT  1049
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTTATCTGAACATAAGTCTTCATGCTTTCACAGCAAACACTGTT  1049

seq1  TCCTTTTCAAAGAATCAACTCCCCAGCCTTCTGTCCTGCTTTTGCTCTTT  1099
      ||| |||| ||||||||||| |||||||| |||| ||||  |||||||||
seq2  TCC-TTTCCAAGAATCAACTTCCCAGCCTCCTGT-CTGC--TTGCTCTTT  1095

seq1  AGTTTTAATTTTTAATTAAAATATTACTTCATTTTCTCCTTCCATTCCTT  1149
      |||||||| |||||||||||||| |||||||||||| |||| |||| |||
seq2  AGTTTTAAATTTTAATTAAAATA-TACTTCATTTTCCCCTT-CATTTCTT  1143

seq1  CCCACAAGCCCCTCCCATGTACTGTAACTTAGCTCTTTTAACATTCTATC  1199
      |||||| ||||||||||||| | | |||||||||||||  ||||||||||
seq2  CCCACAGGCCCCTCCCATGTTC-GGAACTTAGCTCTTT--ACATTCTATC  1190

seq1  GCCACT  1205
      ||||||
seq2  GCCACT  1196

seq1: chr2_111208574_111209712
seq2: B6Ng01-164O16.g_68_1199 (reverse)

seq1  CCAATCAGATGTATATTTTCCTGTATTTAGGAACATTCCCTGACTAGAAA  50
      ||||||||||||||| |||||||||||  |||||||| ||||||||||||
seq2  CCAATCAGATGTATA-TTTCCTGTATTAGGGAACATTTCCTGACTAGAAA  49

seq1  AAGTATAGCAACATAGGAAAATTATTTTAAACTTGAGTGGAAATAATGTT  100
      ||||||  || ||||||  || || ||| ||| ||||||||||||||| |
seq2  AAGTATGCCACCATAGG--AAGTA-TTTGAACCTGAGTGGAAATAATG-T  95

seq1  AAGAC--ATAATTTGTATTTTTTGTTGCTTATATGACCAAACGTTAAGTT  148
      |||||   |||||||||||||||| ||||||| ||||||||||||||| |
seq2  AAGACCATTAATTTGTATTTTTTGGTGCTTATTTGACCAAACGTTAAG-T  144

seq1  ATTGTTTCTATTTCAGGAATTGTTAGTTCAACTTTGTCTCTTTCAACCCA  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTGTTTCTATTTCAGGAATTGTTAGTTCAACTTTGTCTCTTTC-ACCCA  193

seq1  TTAGAACACTTTGTAGTAAATGGAAGAAGGAAACCAGACTGTGGTGTCTG  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGAACACTTTGTAGTAAAT-GAAGAAGGAAACCAGACTGTGGTGTCTG  242

seq1  AGTTTATTTTTCAGGGACTTTGTGCTTCAAAGGAACTACAGCTCTTCCTT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTA-TTTTCAGGGACTTTGTGCTTCAAAGGAACTACAGCTCTTCCTT  291

seq1  CTGCTGCCATTTTCCATCCTCTATCTAATGGCTGTGGTAGGCAACCTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCATTTTCCATCCTCTATCTAATGGCTGTGGTAGGCAACCTCTT  341

seq1  TGTTGTGATATTGATCATCATTGATCATCATCTCCATTCTCCCATGTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGATATTGATCATCATTGATCATCATCTCCATTCTCCCATGTACT  391

seq1  TTCTGTTAGCTAATCTATCATTTATTGACTTCTGCCTTTCCTCAGTTACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGCTAATCTATCATTTATTGACTTCTGCCTTTCCTCAGTTACC  441

seq1  ACCCCCAAACTGATAACTGACCTCCTAAAAGATAACAAAACCATTTCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAACTGATAACTGACCTCCTAAAAGATAACAAAACCATTTCCTT  491

seq1  TGGGGGCTGCATGAGCCAGATCCTCTGTGTGCACTTCTTTGGAGGAGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGCATGAGCCAGATCCTCTGTGTGCACTTCTTTGGAGGAGGTG  541

seq1  AGATGGTGCTTCTTGTAACAATGGCCTATGACCGGTATGTGGCCATCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGCTTCTTGTAACAATGGCCTATGACCGGTATGTGGCCATCTGC  591

seq1  AGGCCACTCCACTACAGCAGCATCATGGACAGACAGAAGTGCATCTGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTCCACTACAGCAGCATCATGGACAGACAGAAGTGCATCTGGCT  641

seq1  CGTTGTGATCTCGTGGACCATTGGCTTTATACATGCCATGAGTCAACTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGATCTCGTGGACCATTGGCTTTATACATGCCATGAGTCAACTTA  691

seq1  TTCTGGTTTTGGAACTACCTTTCTGTGGACCTAGAGTGATAGACAGCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTTGGAACTACCTTTCTGTGGACCTAGAGTGATAGACAGCTTT  741

seq1  TTCTGTGATATTCCTTTGGTGATGAAATTAGCCTGCATGAATACTGATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATATTCCTTTGGTGATGAAATTAGCCTGCATGAATACTGATAC  791

seq1  ACTGGAAATTCTAATAAATGCTGACAGTGGTGTTTTGGCAACAACTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATTCTAATAAATGCTGACAGTGGTGTTTTGGCAACAACTTGTT  841

seq1  TCATCCTCTTACTGATATCTTATACTTACATTCTATTAACTGTTCAACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTTACTGATATCTTATACTTACATTCTATTAACTGTTCAACTT  891

seq1  CACTCTAAAGATGGTTCATCAAAGGCCCTATCTACATGCACATCCCATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAAGATGGTTCATCAAAGGCCCTATCTACATGCACATCCCATAT  941

seq1  CATAGTGGTTCTGCTGTTCTTTGGGCCAGTCATTTTCATCTATCTGTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGTTCTGCTGTTCTTTGGGCCAGTCATTTTCATCTATCTGTGGC  991

seq1  CAGTTAGCATCACCTGGGTTGACAAGTTTCTTGCTGTGTTTTACTCAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCATCACCTGGGTTGACAAGTTTCTTGCTGTGTTTTACTCAGTC  1041

seq1  ATCACACCTCTCCTTAATCCAGCCATCTACACACTGAGAAATAAAGATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCTCTCCTTAATCCAGCCATCTACACACTGAGAAATAAAGATAT  1091

seq1  TAAAAATGCCATAAAGAAGCTGATAAATCACATGTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCCATAAAGAAGCTGATAAATCACATGTGAATTC  1132