BAC Information

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BAC

Clone NameB6Ng01-164O20
Chromosome2 (Build37)
Map Location 152,400,949 - 152,561,342
singlet/doubletdoublet
Overlap geneDefb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2
Upstream geneSdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik
Downstream geneId1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O20.bB6Ng01-164O20.g
ACCDH957125DH957126
length2051,087
definitionDH957125|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O20, 5' end.DH957126|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,400,949 - 152,401,153)(152,560,261 - 152,561,342)
sequence
acttccacactggcatttctcatacctttaattccagcatttgggaggca
aaggcaagcagacatctatgagttcgagaacaaagtgagttccaggacag
tcagggttacacagaaaaatttccttcttcttctcaaaggaagaagaaaa
aggagaaggaggagaaagagaaggaggaagaggaggaggaggaagaggag
gaaag
gaattccgtgcctgactcaaatttctagagaaatgaactgtaaagtccct
aggaccaggaactaggtcgactacactgggagagatactaggaacctctt
taaagcggaggacagaatctgagacctgaactagatagagggtcgcggtg
gagtagaactacagcacccaattctaccctggatttgcagcctcttgcag
aaaggttccaaatctgcagcagctggtgatttttttttttaatttttttc
tcctcttttgcaagatttttttccttcttgaaggcctccgagcaagctct
ccctcccacggcgcagcagctgcggagatcaccccctccctttcctttcc
cgggctggtctgtgtcagcgtctgaacaagcggctcagaccgttagacgc
caggcccgtgacgtcacccattcataaaacccggacgggctgtcaggctg
gcgccgcgcgggcggtcgccatggagacggcaaactgggctggagcattc
tccgctcccccccacccagcccccgcccctgagcccgtcacctgcagact
tagggcgcgaagcctgggaatgctttcctcgtgggtgcggttgctgacca
agggtcaacttacctccccgccccacacctgccgagtctcccccacccag
ccccacagctcgggcggtttgggaggttttctcacaccctgccaccccaa
acccgtcagggccgaggcccctccccagctgagttggattccttcgctga
gattacaggtgtgctctgccacattcatgttcatgaactgagacagattg
taaggctggttctcttttttttctggactccgaaactgactcagtttcta
gaaaatgaactgtaaagtccccgggaccaggacctaagtctgttgaactg
ggggcgaacagttcaggtctcagagaccgagtctgagatctgaactagac
agaagggtctccgtggtaagatgtttctcatgccttctcctgagctctac
cttgctctctgcctgggttctataatagccacgaccaattcgaaccattc
gctgctctctagggtagagctgtgtgggtttgccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152400949_152401153
seq2: B6Ng01-164O20.b_53_257

seq1  ACTTCCACACTGGCATTTCTCATACCTTTAATTCCAGCATTTGGGAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACACTGGCATTTCTCATACCTTTAATTCCAGCATTTGGGAGGCA  50

seq1  AAGGCAAGCAGACATCTATGAGTTCGAGAACAAAGTGAGTTCCAGGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGCAGACATCTATGAGTTCGAGAACAAAGTGAGTTCCAGGACAG  100

seq1  TCAGGGTTACACAGAAAAATTTCCTTCTTCTTCTCAAAGGAAGAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTACACAGAAAAATTTCCTTCTTCTTCTCAAAGGAAGAAGAAAA  150

seq1  AGGAGAAGGAGGAGAAAGAGAAGGAGGAAGAGGAGGAGGAGGAAGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGAGGAGAAAGAGAAGGAGGAAGAGGAGGAGGAGGAAGAGGAG  200

seq1  GAAAG  205
      |||||
seq2  GAAAG  205

seq1: chr2_152560261_152561342
seq2: B6Ng01-164O20.g_70_1156 (reverse)

seq1  GAAGGCAAA-CCACACAGCTCTAACCCTAAGAGAGCAGCGAATGG-TCGA  48
      ||||||||| |||||||||||| ||||| |||||||||||||||| ||||
seq2  GAAGGCAAACCCACACAGCTCT-ACCCT-AGAGAGCAGCGAATGGTTCGA  48

seq1  A-TGGTCGTGGCTATTATAGAAACCAGGCAGAGAGCAAGGTAGAGCTCA-  96
      | |||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ATTGGTCGTGGCTATTATAGAACCCAGGCAGAGAGCAAGGTAGAGCTCAG  98

seq1  GAGAAAGCATGAGAAACATCT--ACACGGAGACCCTTCTGTCTAGTTCAG  144
      ||||| |||||||||||||||   ||||||||||||||||||||||||||
seq2  GAGAAGGCATGAGAAACATCTTACCACGGAGACCCTTCTGTCTAGTTCAG  148

seq1  ATCTCAGACTCGGTTCTCTGAGACCTGAACTGTTCGCCCCCAGTTCAACA  194
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGACTCGG-TCTCTGAGACCTGAACTGTTCGCCCCCAGTTCAACA  197

seq1  GACCTAGGTCCTGGTCCCGGGGACTTTACAGTTCATTTTCTAGAAACTGA  244
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGTCCTGGTCCCGGGGACTTTACAGTTCATTTTCTAGAAACTGA  247

seq1  GTCAGTTTCGGAGTCCAG-AATAAAAGAGAACCAGCCTTACAATCTGTCT  293
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GTCAGTTTCGGAGTCCAGAAAAAAAAGAGAACCAGCCTTACAATCTGTCT  297

seq1  CAGTTCATGAACATG-ATGTGGCAGAGCACACCTGTAATCTCAGCGAAGG  342
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGAACATGAATGTGGCAGAGCACACCTGTAATCTCAGCGAAGG  347

seq1  AATCCAACTCAGCTGGGGAGGGGCCTCGGCCCTGACGGGTTTGGGGTGGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACTCAGCTGGGGAGGGGCCTCGGCCCTGACGGGTTTGGGGTGGC  397

seq1  AGGGTGTGAGAAAACCTCCCAAACCGCCCGAGCTGTGGGGCTGGGTGGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGAGAAAACCTCCCAAACCGCCCGAGCTGTGGGGCTGGGTGGGG  447

seq1  GAGACTCGGCAGGTGTGGGGCGGGGAGGTAAGTTGACCCTTGGTCAGCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCGGCAGGTGTGGGGCGGGGAGGTAAGTTGACCCTTGGTCAGCAA  497

seq1  CCGCACCCACGAGGAAAGCATTCCCAGGCTTCGCGCCCTAAGTCTGCAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCCACGAGGAAAGCATTCCCAGGCTTCGCGCCCTAAGTCTGCAGG  547

seq1  TGACGGGCTCAGGGGCGGGGGCTGGGTGGGGGGGAGCGGAGAATGCTCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGGCTCAGGGGCGGGGGCTGGGTGGGGGGGAGCGGAGAATGCTCCA  597

seq1  GCCCAGTTTGCCGTCTCCATGGCGACCGCCCGCGCGGCGCCAGCCTGACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTGCCGTCTCCATGGCGACCGCCCGCGCGGCGCCAGCCTGACA  647

seq1  GCCCGTCCGGGTTTTATGAATGGGTGACGTCACGGGCCTGGCGTCTAACG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTCCGGGTTTTATGAATGGGTGACGTCACGGGCCTGGCGTCTAACG  697

seq1  GTCTGAGCCGCTTGTTCAGACGCTGACACAGACCAGCCCGGGAAAGGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCCGCTTGTTCAGACGCTGACACAGACCAGCCCGGGAAAGGAAA  747

seq1  GGGAGGGGGTGATCTCCGCAGCTGCTGCGCCGTGGGAGGGAGAGCTTGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGTGATCTCCGCAGCTGCTGCGCCGTGGGAGGGAGAGCTTGCT  797

seq1  CGGAGGCCTTCAAGAAGGAAAAAAATCTTGCAAAAGAGGAGAAAAAAATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCCTTCAAGAAGGAAAAAAATCTTGCAAAAGAGGAGAAAAAAATT  847

seq1  AAAAAAAAAAATCACCAGCTGCTGCAGATTTGGAACCTTTCTGCAAGAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATCACCAGCTGCTGCAGATTTGGAACCTTTCTGCAAGAGG  897

seq1  CTGCAAATCCAGGGTAGAATTGGGTGCTGTAGTTCTACTCCACCGCGACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCCAGGGTAGAATTGGGTGCTGTAGTTCTACTCCACCGCGACC  947

seq1  CTCTATCTAGTTCAGGTCTCAGATTCTGTCCTCCGCTTTAAAGAGGTTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTAGTTCAGGTCTCAGATTCTGTCCTCCGCTTTAAAGAGGTTCC  997

seq1  TAGTATCTCTCCCAGTGTAGTCGACCTAGTTCCTGGTCCTAGGGACTTTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTCTCCCAGTGTAGTCGACCTAGTTCCTGGTCCTAGGGACTTTA  1047

seq1  CAGTTCATTTCTCTAGAAATTTGAGTCAGGCACGGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATTTCTCTAGAAATTTGAGTCAGGCACGGAATTC  1087