BAC Information

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BAC

Clone NameB6Ng01-165C05
Chromosome2 (Build37)
Map Location 126,569,481 - 126,721,432
singlet/doubletdoublet
Overlap geneUsp8, Usp50, Trpm7, 2010106G01Rik
Upstream gene3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, LOC100043714
Downstream geneAp4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C05.bB6Ng01-165C05.g
ACCDH957276DH957277
length1,156883
definitionDH957276|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C05, 5' end.DH957277|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,569,481 - 126,570,632)(126,720,548 - 126,721,432)
sequence
gaattccatagggagtgaaattggaagacagcctctttcccccttcctgt
actggagacagtcttaagaacttaacactttcatatgtgtagagtcattt
gaggtgctgtaaacaccctagaaacctcagcggccctcaggttatgacat
gtgtgggtagagaacacatgcaaaaaaggtttagttaataaatagacctt
gcattttgaatatgatctgtgtaaaattctgtattttcagcattctcttg
cttatgtttaaaatatattagaggacagcccttttcaagttaataaaaac
catataggatataagcagtagactctgagagcatggtgtatatacactat
aagaacataatatttaacattttatactgcattgtaaaccagtgcttcac
gttctattgagttttattttcttcactggttcatttttctctttagtggt
atgaaatcccaaatgaactcacatttaaacttgacaatagaatacacctt
tcagagagacttaaaaggttttttgttttttgtttttgtttttgtttttg
ttttttgacagggtttctctgtatagccctggctgtcctggaactcactc
tacagaccaggctggcctcgaactcagaaatccgactgcctctgcctctg
cctctctgcctctgcacctctgcctctgtgcctctgcctctgcctctgcc
cctctctgcctctgcctctgcctctgcctctgcctctgcctctgcccctc
tctgcctctgcctctgcccctctctgcctctgcctctgcccctctctacc
tctgcctctgcccctctctgcctctgcctctgcccctctctgcttctgcc
tctgccactctctgcctctgccccattctctctctgcctctgcccactct
ctctctgcctctgccctctctgcctctgcctctgccctctctctgcctct
gcccttctctgcctcccaagtgctgggattaaaggcatgtaccaccaccc
cgcccagttttctttttgtttttagactcgaaacatttaaaaataagtta
atttaggatgaattggatatcataaaaaatttacctcggtttgtaccata
ccttttagtccagtacaagagtttacagactcgaggtgagggatttgggg
actttc
gaattccaactgctacaaaggacaatattcacaccgggaagtagaaatta
atgggagaactggaaaatgcattcatatgggccataagtcccttctgaaa
agttaaagatgatattgacctacgcagtgttgtaaaagaaatgcttggtt
ctataacatcattctttttttaaggtttatttttgaatttttaaattatt
ttttaagtattactttttaaagatttatttatttatttaatgtatatgag
tacactatgtcttcagacacaccagaagagggcgtcagatctcattacag
atggctgtgagccaccgtgtgagttctggaatttgaactcaggacctctg
gaagagcagtcagtgctcttaacctctgagctatctctccagcccctatt
tttattatttttaaatcgtttatgtatgtgtgtatgtgcacattagtaca
ggtttggtggcatcaggcaagcgatcccctcctaggactagagttacagg
cagctgtgatctcaccaaagcccatgttggggaccaaactgagagctctt
caaactctgaaccatcatctctagtcccaaggttcctcttactttagttc
tgagataaggtctctctgtgtaactctggctgtcctgccccaaaccattt
agataaggctggctttgaactcagagcaacttgcctgcctctgtgtctgc
agtgttagagttaaaaataggtgtggtggtggcagctgaggagtagctca
gttaaatcatgaggtgtggggaggaactgggaaatgtagagggagagaaa
actgtaatcagatatattgtatgaagaaagaatctatttttcaataaaag
gaaaaggggatgaggtgaggaggggagatagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126569481_126570632
seq2: B6Ng01-165C05.b_44_1199

seq1  GAATTCCATAGGGAGTGAAATTGGAAGACAGCCTCTTTCCCCCTTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGGAGTGAAATTGGAAGACAGCCTCTTTCCCCCTTCCTGT  50

seq1  ACTGGAGACAGTCTTAAGAACTTAACACTTTCATATGTGTAGAGTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACAGTCTTAAGAACTTAACACTTTCATATGTGTAGAGTCATTT  100

seq1  GAGGTGCTGTAAACACCCTAGAAACCTCAGCGGCCCTCAGGTTATGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGTAAACACCCTAGAAACCTCAGCGGCCCTCAGGTTATGACAT  150

seq1  GTGTGGGTAGAGAACACATGCAAAAAAGGTTTAGTTAATAAATAGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTAGAGAACACATGCAAAAAAGGTTTAGTTAATAAATAGACCTT  200

seq1  GCATTTTGAATATGATCTGTGTAAAATTCTGTATTTTCAGCATTCTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGAATATGATCTGTGTAAAATTCTGTATTTTCAGCATTCTCTTG  250

seq1  CTTATGTTTAAAATATATTAGAGGACAGCCCTTTTCAAGTTAATAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTAAAATATATTAGAGGACAGCCCTTTTCAAGTTAATAAAAAC  300

seq1  CATATAGGATATAAGCAGTAGACTCTGAGAGCATGGTGTATATACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGATATAAGCAGTAGACTCTGAGAGCATGGTGTATATACACTAT  350

seq1  AAGAACATAATATTTAACATTTTATACTGCATTGTAAACCAGTGCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATAATATTTAACATTTTATACTGCATTGTAAACCAGTGCTTCAC  400

seq1  GTTCTATTGAGTTTTATTTTCTTCACTGGTTCATTTTTCTCTTTAGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTGAGTTTTATTTTCTTCACTGGTTCATTTTTCTCTTTAGTGGT  450

seq1  ATGAAATCCCAAATGAACTCACATTTAAACTTGACAATAGAATACACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCCAAATGAACTCACATTTAAACTTGACAATAGAATACACCTT  500

seq1  TCAGAGAGACTTAAAAGGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGACTTAAAAGGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTG  550

seq1  TTTTTTGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTC  600

seq1  TACAGACCAGGCTGGCCTCGAACTCAGAAATCCGACTGCCTCTGCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCAGGCTGGCCTCGAACTCAGAAATCCGACTGCCTCTGCCTCTG  650

seq1  CCTCTCTGCCTCTGCACCTCTGCCTCTGTGCCTCTGCCTCTGCCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCTCTGCACCTCTGCCTCTGTGCCTCTGCCTCTGCCTCTGCC  700

seq1  CCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTC  750

seq1  TCTGCCTCTGCCTCTGCCCCTCTCTGCCTCTGCCTCTGCCCCTCTCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCTGCCCCTCTCTGCCTCTGCCTCTGCCCCTCTCTACC  800

seq1  TCTGCCTCTGCCCCTCTCTGCCTCTGCCTCTGCCCCTCTCTGCTTCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCCCTCTCTGCCTCTGCCTCTGCCCCTCTCTGCTTCTGCC  850

seq1  TCTGCCACTCTCTGCCTCTGCCCCATTCTCTCTCTGCCTCTGCCCCACTC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGCCACTCTCTGCCTCTGCCCCATTCTCTCTCTGCCTCTG-CCCACTC  899

seq1  TCTCTCTGCCTCTGCCCCTCTCTGCCTCTGCCTCTGCCCCTCTCTCTGCC  950
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TCTCTCTGCCTCTG-CCCTCTCTGCCTCTGCCTCTG-CCCTCTCTCTGCC  947

seq1  TCTGCCCCTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTACCACCA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTACCACCA  997

seq1  --CCGCCCAGTTTTCTTTTTGTTTTTAGTCT-GATACATTTAATAATAGT  1047
        |||||||||||||||||||||||||| || || |||||||| ||||  
seq2  CCCCGCCCAGTTTTCTTTTTGTTTTTAGACTCGAAACATTTAAAAATAAG  1047

seq1  TTAATTTAGGTATAATTTGCATATCAT--AAAATTTACCT--GTTTGTAA  1093
      |||||||||| || | ||| |||||||  |||||||||||  ||||||| 
seq2  TTAATTTAGG-ATGAATTGGATATCATAAAAAATTTACCTCGGTTTGTAC  1096

seq1  CATA-CATTTAGT-CAGTAACAAGAGTTTACAGACTAGGGGTGAGGGTAT  1141
      |||| | |||||| |||| ||||||||||||||||| | ||||||||  |
seq2  CATACCTTTTAGTCCAGT-ACAAGAGTTTACAGACTCGAGGTGAGGGATT  1145

seq1  TGGGGACTTTC  1152
      |||||||||||
seq2  TGGGGACTTTC  1156

seq1: chr2_126720548_126721432
seq2: B6Ng01-165C05.g_72_954 (reverse)

seq1  AGCTATCTCCCCTCCTCACCTCATCCCCCTTTTCCTTTTTATTG-AAAAT  49
      | |||||||||||||||||||||| |||||||||| |||||||| |||||
seq2  AACTATCTCCCCTCCTCACCTCAT-CCCCTTTTCC-TTTTATTGAAAAAT  48

seq1  AGATTCTTTCTTCATACAATATATCCTGATTACAGTTTTCTCTCCCTCTA  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGATTCTTTCTTCATACAATATAT-CTGATTACAGTTTTCTCTCCCTCTA  97

seq1  CATTTCCCAGTTCCTCCCCACACCTCATGATTTAACTGAGCTACTCCTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCAGTTCCTCCCCACACCTCATGATTTAACTGAGCTACTCCTCA  147

seq1  GCTGCCACCACCACACCTATTTTTAACTCTAACACTGCAGACACAGAGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACCACCACACCTATTTTTAACTCTAACACTGCAGACACAGAGGC  197

seq1  AGGCAAGTTGCTCTGAGTTCAAAGCCAGCCTTATCTAAATGGTTTGGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTGCTCTGAGTTCAAAGCCAGCCTTATCTAAATGGTTTGGGGC  247

seq1  AGGACAGCCAGAGTTACACAGAGAGACCTTATCTCAGAACTAAAGTAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGAGTTACACAGAGAGACCTTATCTCAGAACTAAAGTAAGA  297

seq1  GGAACCTTGGGACTAGAGATGATGGTTCAGAGTTTGAAGAGCTCTCAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTGGGACTAGAGATGATGGTTCAGAGTTTGAAGAGCTCTCAGTT  347

seq1  TGGTCCCCAACATGGGCTTTGGTGAGATCACAGCTGCCTGTAACTCTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCAACATGGGCTTTGGTGAGATCACAGCTGCCTGTAACTCTAGT  397

seq1  CCTAGGAGGGGATCGCTTGCCTGATGCCACCAAACCTGTACTAATGTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGGGGATCGCTTGCCTGATGCCACCAAACCTGTACTAATGTGCA  447

seq1  CATACACACATACATAAACGATTTAAAAATAATAAAAATAGGGGCTGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACATACATAAACGATTTAAAAATAATAAAAATAGGGGCTGGAG  497

seq1  AGATAGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  547

seq1  TCAAATTCCAGAACTCACACGGTGGCTCACAGCCATCTGTAATGAGATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCCAGAACTCACACGGTGGCTCACAGCCATCTGTAATGAGATCT  597

seq1  GACGCCCTCTTCTGGTGTGTCTGAAGACATAGTGTACTCATATACATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCCTCTTCTGGTGTGTCTGAAGACATAGTGTACTCATATACATTAA  647

seq1  ATAAATAAATAAATCTTTAAAAAGTAATACTTAAAAAATAATTTAAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATCTTTAAAAAGTAATACTTAAAAAATAATTTAAAAAT  697

seq1  TCAAAAATAAACCTTAAAAAAAGAATGATGTTATAGAACCAAGCATTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAAACCTTAAAAAAAGAATGATGTTATAGAACCAAGCATTTCT  747

seq1  TTTACAACACTGCGTAGGTCAATATCATCTTTAACTTTTCAGAAGGGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACACTGCGTAGGTCAATATCATCTTTAACTTTTCAGAAGGGACT  797

seq1  TATGGCCCATATGAATGCATTTTCCAGTTCTCCCATTAATTTCTACTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCCATATGAATGCATTTTCCAGTTCTCCCATTAATTTCTACTTCC  847

seq1  CGGTGTGAATATTGTCCTTTGTAGCAGTTGGAATTC  885
      ||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGAATATTGTCCTTTGTAGCAGTTGGAATTC  883