BAC Information

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BAC

Clone NameB6Ng01-165D12
Chromosome2 (Build37)
Map Location 167,796,507 - 167,985,329
singlet/doubletdoublet
Overlap genePtpn1, 2310033K02Rik, Pard6b
Upstream geneStau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728
Downstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165D12.bB6Ng01-165D12.g
ACCDH957337DH957338
length1,114934
definitionDH957337|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D12, 5' end.DH957338|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,796,507 - 167,797,625)(167,984,392 - 167,985,329)
sequence
gaattctgtgtgttgtataccagagagtagcttacttcacttccccggga
ggatgaaggtctctgagtctctgccttggagacccagaacagctctctgc
agcaggaagggtacctgagctcacaggacctgtgtgactgaatcccagcc
tgatcttttttcctaaatccagcccagatattttggttcatcaaaagcta
taatgagtatttgaatccagatcatcagtggtgtttgatattagcaaaat
agaactccgggaactgaactgaaccaaatcagaatgctccaatgagctgc
acctgcgtgctgtcttccacggccctcagcctgacagggctctagcctcc
cgccctgttgcccgtgtgttcctcagggggctctgggcatcctgagatcc
tactgaaggcatctgtgagggacactgcttctgtgtagtgtggtttttac
ctcgcagcaaggaccagagcccactgtgacacgttgctgggtgagaagtg
taaaccctgccccaaagctacagggatcagggttccagccagctctagtt
ttcctagggtgaaagctgtagtgtccgggagacccccacctgggagttgt
cagaaagctagaagacagccttgccttgcaagcctcctgtctcatgtagc
aggtgctcagagtaaccagagctcttcttcccccagttaaaatgtgccca
gtattggccacagcaagaagaaaaggagatggtctttgatgacacaggtt
ttgaagttgacactaatctctgaagatgtcaagtcatattacacagtacg
acagttggagttggaaaacctgactgtaagtatggcaggggggaagttcc
tctggagactgtgacttgcttctgatctagtccttgggtgctaatttcag
ctgtggcattcccgggaaatatgagtcttgtgcacagtatggcttcattc
catgtgaacagaactagctgtgtagagcatgcccagcaccagtgaagaca
agttacacgcacttccatggtcttcacccttgacaccacgttacaccagt
ttcaaaggaaaagtccctttcttaactgagaaagtgcttgcctctgctgt
ggggacttggtgac
gaattcatctaggcggtaagcgccgtcattagcttgtgaacaggccaggt
gtgccgttttatgatgttgcatttttagaattaaaatgaatgagaacact
tagactaaatcgcacttgaggggtttgcttcctgcttcaagctttaattt
acaaggcgcctcagaaggagccgctctgggaaggttctcagctgctaagc
ggcttagctctgcatcactcagggctggctcagtgaacgaggagcgagga
ggggcactggccagacagggaaagccacagcagcagagtcctcctccctg
tgtcctctgggtcaacagagggcttcttgattgtccccgggatacaccca
aggagctctgctagtggagagcacactggcaaggaatagtcagagctgga
cgcggaaggggcggggtggaggctggcccgggaggtgttcagagcaggtc
gcagtgaacactttggggtctggaaacggcagcttccctgttcgagcgtc
tcattccactcaacccccggggatcccgggttaattattaggaattccca
agttctaggaactttggcccggactctgggcctggcaaagggacaaggga
cctgccagaacagaggcttggggacccgctgctaacgggatgtggtttgt
ttgcccagtagagtgttaagcatgaacaaagggagcccttcagggcaccc
aaaagagcaagcaagctgtttccaggtccgcacactgcaagggaaggcct
gcctggacagcattggtgggcgacagtgccccagtagcaagctaagccac
acctgggaagtgggcgtgtcctttcctgtctcctccctcttcttcccata
cccttccctctctctcccccaaccccccttcccccgctccccggcgtctt
ctgggccctaagcaagcatgccacaagctgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167796507_167797625
seq2: B6Ng01-165D12.b_46_1159

seq1  GAATTCTGTGTGTTGTATACCAGAGAGTAGCTTACTTCACTTCCCCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGTTGTATACCAGAGAGTAGCTTACTTCACTTCCCCGGGA  50

seq1  GGATGAAGGTCTCTGAGTCTCTGCCTTGGAGACCCAGAACAGCTCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGTCTCTGAGTCTCTGCCTTGGAGACCCAGAACAGCTCTCTGC  100

seq1  AGCAGGAAGGGTACCTGAGCTCACAGGACCTGTGTGACTGAATCCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGGGTACCTGAGCTCACAGGACCTGTGTGACTGAATCCCAGCC  150

seq1  TGATCTTTTTTCCTAAATCCAGCCCAGATATTTTGGTTCATCAAAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTTTCCTAAATCCAGCCCAGATATTTTGGTTCATCAAAAGCTA  200

seq1  TAATGAGTATTTGAATCCAGATCATCAGTGGTGTTTGATATTAGCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTATTTGAATCCAGATCATCAGTGGTGTTTGATATTAGCAAAAT  250

seq1  AGAACTCCGGGAACTGAACTGAACCAAATCAGAATGCTCCAATGAGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCGGGAACTGAACTGAACCAAATCAGAATGCTCCAATGAGCTGC  300

seq1  ACCTGCGTGCTGTCTTCCACGGCCCTCAGCCTGACAGGGCTCTAGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGTGCTGTCTTCCACGGCCCTCAGCCTGACAGGGCTCTAGCCTCC  350

seq1  CGCCCTGTTGCCCGTGTGTTCCTCAGGGGGCTCTGGGCATCCTGAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGTTGCCCGTGTGTTCCTCAGGGGGCTCTGGGCATCCTGAGATCC  400

seq1  TACTGAAGGCATCTGTGAGGGACACTGCTTCTGTGTAGTGTGGTTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGGCATCTGTGAGGGACACTGCTTCTGTGTAGTGTGGTTTTTAC  450

seq1  CTCGCAGCAAGGACCAGAGCCCACTGTGACACGTTGCTGGGTGAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGCAAGGACCAGAGCCCACTGTGACACGTTGCTGGGTGAGAAGTG  500

seq1  TAAACCCTGCCCCAAAGCTACAGGGATCAGGGTTCCAGCCAGCTCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTGCCCCAAAGCTACAGGGATCAGGGTTCCAGCCAGCTCTAGTT  550

seq1  TTCCTAGGGTGAAAGCTGTAGTGTCCGGGAGACCCCCACCTGGGAGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGGTGAAAGCTGTAGTGTCCGGGAGACCCCCACCTGGGAGTTGT  600

seq1  CAGAAAGCTAGAAGACAGCCTTGCCTTGCAAGCCTCCTGTCTCATGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTAGAAGACAGCCTTGCCTTGCAAGCCTCCTGTCTCATGTAGC  650

seq1  AGGTGCTCAGAGTAACCAGAGCTCTTCTTCCCCCAGTTAAAATGTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCAGAGTAACCAGAGCTCTTCTTCCCCCAGTTAAAATGTGCCCA  700

seq1  GTATTGGCCACAGCAAGAAGAAAAGGAGATGGTCTTTGATGACACAGG-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATTGGCCACAGCAAGAAGAAAAGGAGATGGTCTTTGATGACACAGGTT  750

seq1  TTGAAGTTGACACTAATCTCTGAAGATGTCAAGTCATATTACACAGTACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGACACTAATCTCTGAAGATGTCAAGTCATATTACACAGTACG  800

seq1  ACAGTTGGAGTTGGAAAACCTGACTGTAAGTATGGCAGGGGGGAAGTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGAGTTGGAAAACCTGACTGTAAGTATGGCAGGGGGGAAGTTCC  850

seq1  TCTGGAGACTGTGACTTGCTTCTGATCTTAGTCCTTGGGTGCCAATTTCA  899
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TCTGGAGACTGTGACTTGCTTCTGATC-TAGTCCTTGGGTGCTAATTTCA  899

seq1  GCTGTGGCATTCCCGGGAATTATGAGTCTTGTGCACAGTATGGCTTCATT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGTGGCATTCCCGGGAAATATGAGTCTTGTGCACAGTATGGCTTCATT  949

seq1  CCATGGTGAACAGAACTAGCTGTTGTAGGAGGCAGTGCCCAGGCACCAGT  999
      |||| ||||||||||||||||| |||||   ||| |||||| ||||||||
seq2  CCAT-GTGAACAGAACTAGCTG-TGTAG--AGCA-TGCCCA-GCACCAGT  993

seq1  GAAAGACAGGTTACACGCACCTCCCATGGCTCTCACCCTTGACACCACGT  1049
      | |||||| |||||||||| || ||||||   ||||||||||||||||||
seq2  G-AAGACAAGTTACACGCA-CTTCCATGGTCTTCACCCTTGACACCACGT  1041

seq1  AACA-CAGTTCCAAGGGAAAAGTCCCTTTCTTAGCTGAG--AGTGCTTTG  1096
       ||| ||||| ||| |||||||||||||||||| |||||  |||||||  
seq2  TACACCAGTTTCAAAGGAAAAGTCCCTTTCTTAACTGAGAAAGTGCTTGC  1091

seq1  CTCTGCCTGT-GGGACTTGGTGAC  1119
      ||||| |||| |||||||||||||
seq2  CTCTG-CTGTGGGGACTTGGTGAC  1114

seq1: chr2_167984392_167985329
seq2: B6Ng01-165D12.g_69_1002 (reverse)

seq1  ATTTCAGCTTGTGGCCTGCTTGCTTTAGGGCCAGGAAGGACGGCGGGGGA  50
      ||||||||||||||| ||||||| ||||||||  ||| ||| || |||||
seq2  ATTTCAGCTTGTGGCATGCTTGC-TTAGGGCCCAGAA-GAC-GCCGGGGA  47

seq1  GCGGGGGGAGGGGGGTTGGGGGGAGAGAGAGGGAAGGGTATGGGAAGGAA  100
      ||||||| ||||||||| |||||||||||||||||||||||||||| |||
seq2  GCGGGGGAAGGGGGGTT-GGGGGAGAGAGAGGGAAGGGTATGGGAA-GAA  95

seq1  GAGGGAGGAGACAGGAAAGGACACGCCCACTT-CCAGGTGTGGCTTAGCT  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGGAGGAGACAGGAAAGGACACGCCCACTTCCCAGGTGTGGCTTAGCT  145

seq1  TGCTACTGGGGCACTGTCGCCCACCAATGCTGTCCAGGCAGGCCTTCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGGGGCACTGTCGCCCACCAATGCTGTCCAGGCAGGCCTTCCCT  195

seq1  TGCAGTGTGCGGACCTGGAAACAGCTTGCTTGCTCTTTTGGGTGCCCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGCGGACCTGGAAACAGCTTGCTTGCTCTTTTGGGTGCCCTGA  245

seq1  AGGGCTCCCTTTGTTCATGCTTAACACTCTACTGGGCAAACAAACCACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCCTTTGTTCATGCTTAACACTCTACTGGGCAAACAAACCACAT  295

seq1  CCCGTTAGCAGCGGGTCCCCAAGCCTCTGTTCTGGCAGGTCCCTTGTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTAGCAGCGGGTCCCCAAGCCTCTGTTCTGGCAGGTCCCTTGTCCC  345

seq1  TTTGCCAGGCCCAGAGTCCGGGCCAAAGTTCCTAGAACTTGGGAATTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGGCCCAGAGTCCGGGCCAAAGTTCCTAGAACTTGGGAATTCCT  395

seq1  AATAATTAACCCGGGATCCCCGGGGGTTGAGTGGAATGAGACGCTCGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAACCCGGGATCCCCGGGGGTTGAGTGGAATGAGACGCTCGAAC  445

seq1  AGGGAAGCTGCCGTTTCCAGACCCCAAAGTGTTCACTGCGACCTGCTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCTGCCGTTTCCAGACCCCAAAGTGTTCACTGCGACCTGCTCTG  495

seq1  AACACCTCCCGGGCCAGCCTCCACCCCGCCCCTTCCGCGTCCAGCTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCCCGGGCCAGCCTCCACCCCGCCCCTTCCGCGTCCAGCTCTGA  545

seq1  CTATTCCTTGCCAGTGTGCTCTCCACTAGCAGAGCTCCTTGGGTGTATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTGCCAGTGTGCTCTCCACTAGCAGAGCTCCTTGGGTGTATCC  595

seq1  CGGGGACAATCAAGAAGCCCTCTGTTGACCCAGAGGACACAGGGAGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACAATCAAGAAGCCCTCTGTTGACCCAGAGGACACAGGGAGGAGG  645

seq1  ACTCTGCTGCTGTGGCTTTCCCTGTCTGGCCAGTGCCCCTCCTCGCTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGCTGTGGCTTTCCCTGTCTGGCCAGTGCCCCTCCTCGCTCCT  695

seq1  CGTTCACTGAGCCAGCCCTGAGTGATGCAGAGCTAAGCCGCTTAGCAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACTGAGCCAGCCCTGAGTGATGCAGAGCTAAGCCGCTTAGCAGCT  745

seq1  GAGAACCTTCCCAGAGCGGCTCCTTCTGAGGCGCCTTGTAAATTAAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTTCCCAGAGCGGCTCCTTCTGAGGCGCCTTGTAAATTAAAGCT  795

seq1  TGAAGCAGGAAGCAAACCCCTCAAGTGCGATTTAGTCTAAGTGTTCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGAAGCAAACCCCTCAAGTGCGATTTAGTCTAAGTGTTCTCAT  845

seq1  TCATTTTAATTCTAAAAATGCAACATCATAAAACGGCACACCTGGCCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAATTCTAAAAATGCAACATCATAAAACGGCACACCTGGCCTGT  895

seq1  TCACAAGCTAATGACGGCGCTTACCGCCTAGATGAATTC  938
      |||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCTAATGACGGCGCTTACCGCCTAGATGAATTC  934