BAC Information

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BAC

Clone NameB6Ng01-165E03
Chromosome2 (Build37)
Map Location 155,709,335 - 155,851,232
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4
Upstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneSpag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E03.bB6Ng01-165E03.g
ACCDH957365DH957366
length1,0181,076
definitionDH957365|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E03, 5' end.DH957366|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,709,335 - 155,710,359)(155,850,157 - 155,851,232)
sequence
gaattctctggcatgagaaaaaccaccacaccgctgaactggctttataa
gttttctttttctatggcttttcttacagagctatacctggaacgccaaa
tgacacagaaagaattgcaaattaccacctttaaatctgtgcccaccccc
accccaaagctgagaagaaactctgcagccacatagttgggctgggcctg
cttctgtgtctactgaagcactgggaagacttgttcgttgggggagaccc
aggccagactctatgtgttccactgctgcaggctgtatgctaacagactg
aagcccctatacctgcaacacactcacaaattccaaattccaactgtcct
tcctatagaaaaggtatctgttataccatcaagctagaggggaggggttg
tgtcaaatacaatgaagatcaagaacagtaattaccactctaagtttcta
ttttgaaaacactatctctcacttaaagttttcaccacagctcaggcatt
tctcattatgaaggtaatgtaggagcttgtactaaggaaattactaatat
cttgctatttaaagtatggttgccaccttccacacccctattaacacagg
cataacctggaaacttgttagaaaactagacactctaaactggatgtgat
gtggatgtctgtaactccacaacttgggatgtggaaacaaaaggcccaga
aatccaagggcatccttggctatacagtgagttcaaggtcagtctgggtt
ataagagatcctgtgaaagaacaaggcaatggagaggaaaggctcccgac
tgaggatatggctcagttggtgtgtagcacgctgggttcattcccagcac
aacagaaagcaaggtgggatggtgcacacccacaacctctgcgttgggag
gtggaggtagaggatccaaagtttaagcatcctgagttacatagtgagtt
caaggcagcagaacactctgaaaaagagagatagagtgaaagaaagacag
agaggaaggaagggaggg
gaattcttgagataggacagatcttcctggtgtctagtattgtcccctcc
cctaatctcctcctatgggctcatcctatggctgagtcacacagtagatt
tttctaccttttcaaccttaggctgaattgttaacatgagctaggcacca
actgctggagaccggcctcttgtctctagcttacttgccattctccgatg
ggttttaaaccttctacatgaacaggctgtaaggatttatttcttacaat
ttgatgaagaagagccaggggctgtgatgtggcagttggctagcgaggag
gagggcctgtgtttgacttccagcatctcataaaatcctgacattaggtc
caacaagggcctgggcttccaggatgctagaccttctgactccactggat
ttggcttctactccctaggctaccaacctggctcctgcagaccccaatgg
caaggcagacccctatgtggtggttagcgctggcaaggagcagcgggaca
ctaaggaacgctacatccccaagcaactcaaccccatctttggagagtga
ggctgggctctgggcttgggaatgggggcgtctccggctccacagcttct
tgcctaggcggctgtgacgagggctggacactgccacccaggtctcctct
gagggcatggagctgtggttagtcaatttcccttcctgcccagggtcctg
gagctgagcgtctccctcccagcccagccagagctgactgtggccgtatt
cgaccatgacctcgtgggttcagatgacctcatcggggagacccacattg
acctggaaaacagattctatagccaccacagagccaactgtgggctggcc
tcccagtatgatgtgtgagtcagtccgacagggccctaagaagccattcc
caaaacaacactgcgaagctcacatccccacttaaaacttgggtgctggg
ttcttcttcatccttgtccgaggcagggcctccttactgttgtggtgcca
ggctaccttgttcggtaagcttccatcctcctggtcttcacttcaatctc
ccaaaggagtggcaggattacaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155709335_155710359
seq2: B6Ng01-165E03.b_46_1063

seq1  GAATTCTCTGGCATGAGAAAAACCACCACACCGCTGAACTGGCTTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCATGAGAAAAACCACCACACCGCTGAACTGGCTTTATAA  50

seq1  GTTTTCTTTTTCTATGGCTTTTCTTACAGAGCTATACCTGGAACGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTTCTATGGCTTTTCTTACAGAGCTATACCTGGAACGCCAAA  100

seq1  TGACACAGAAAGAATTGCAAATTACCACCTTTAAATCTGTGCCCACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGAAAGAATTGCAAATTACCACCTTTAAATCTGTGCCCACCCCC  150

seq1  ACCCCAAAGCTGAGAAGAAACTCTGCAGCCACATAGTTGGGCTGGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAGCTGAGAAGAAACTCTGCAGCCACATAGTTGGGCTGGGCCTG  200

seq1  CTTCTGTGTCTACTGAAGCACTGGGAAGACTTGTTCGTTGGGGGAGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTCTACTGAAGCACTGGGAAGACTTGTTCGTTGGGGGAGACCC  250

seq1  AGGCCAGACTCTATGTGTTCCACTGCTGCAGGCTGTATGCTAACAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACTCTATGTGTTCCACTGCTGCAGGCTGTATGCTAACAGACTG  300

seq1  AAGCCCCTATACCTGCAACACACTCACAAATTCCAAATTCCAACTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTATACCTGCAACACACTCACAAATTCCAAATTCCAACTGTCCT  350

seq1  TCCTATAGAAAAGGTATCTGTTATACCATCAAGCTAGAGGGGAGGGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAGAAAAGGTATCTGTTATACCATCAAGCTAGAGGGGAGGGGTTG  400

seq1  TGTCAAATACAATGAAGATCAAGAACAGTAATTACCACTCTAAGTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATACAATGAAGATCAAGAACAGTAATTACCACTCTAAGTTTCTA  450

seq1  TTTTGAAAACACTATCTCTCACTTAAAGTTTTCACCACAGCTCAGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACACTATCTCTCACTTAAAGTTTTCACCACAGCTCAGGCATT  500

seq1  TCTCATTATGAAGGTAATGTAGGAGCTTGTACTAAGGAAATTACTAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTATGAAGGTAATGTAGGAGCTTGTACTAAGGAAATTACTAATAT  550

seq1  CTTGCTATTTAAAGTATGGTTGCCACCTTCCACACCCCTATTAACACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTTAAAGTATGGTTGCCACCTTCCACACCCCTATTAACACAGG  600

seq1  CATAACCTGGAAACTTGTTAGAAAACTAGACACTCTAAACTGGATGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTGGAAACTTGTTAGAAAACTAGACACTCTAAACTGGATGTGAT  650

seq1  GTGGATGTCTGTAACTCCACAACTTGGGATGTGGAAACAAAAGGCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTCTGTAACTCCACAACTTGGGATGTGGAAACAAAAGGCCCAGA  700

seq1  AATCCAAGGGCATCCTTGGCTATACAGTGAGTTCAAGGTCAGTCTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGGGCATCCTTGGCTATACAGTGAGTTCAAGGTCAGTCTGGGTT  750

seq1  ATAAGAGATCCTGTGAAAGAACAAGGCAATGGAGAGGAAAGGCTCCCGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATCCTGTGAAAGAACAAGGCAATGGAGAGGAAAGGCTCCCGAC  800

seq1  TGAGGATATGGCTCAGTTGGTGTGTAGCACGCTGGGTTCATTCCCAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATGGCTCAGTTGGTGTGTAGCACGCTGGGTTCATTCCCAGCAC  850

seq1  AACAGAAAGCAAGGTGGGATGGTGCACACCCACAACCTCTGCGTTTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAGAAAGCAAGGTGGGATGGTGCACACCCACAACCTCTGCG-TTGGGA  899

seq1  GGTGGAGGTAAGAGGATCCAAAGTTTAAGGCCATCCTGAGTTACATAGTG  950
      ||||||||| |||||||||||||||||||  |||||||||||||||||||
seq2  GGTGGAGGT-AGAGGATCCAAAGTTTAAG--CATCCTGAGTTACATAGTG  946

seq1  AGTTCAAGGCCAGCCAGAAACACTCTGAAAAAGAGAGATAGAGGGAAAGA  1000
      ||||||||| ||| ||| ||||||||||||||||||||||||| ||||||
seq2  AGTTCAAGG-CAG-CAG-AACACTCTGAAAAAGAGAGATAGAGTGAAAGA  993

seq1  GAGACAGAGAGGAAGGAAGGGAGGG  1025
       ||||||||||||||||||||||||
seq2  AAGACAGAGAGGAAGGAAGGGAGGG  1018

seq1: chr2_155850157_155851232
seq2: B6Ng01-165E03.g_69_1144 (reverse)

seq1  GTGTGTGTAATCCTG-CACTCCTGTGGGAGATGGAGGTGGAGA-CAGGAG  48
      |||| |||||||||| ||||||| |||||||| || ||| ||| ||||||
seq2  GTGT-TGTAATCCTGCCACTCCTTTGGGAGATTGAAGTGAAGACCAGGAG  49

seq1  ACTGGAAGCTTA-CGAGCAAGGTAGCCTGGCA-CACAACAGTAAGGAGGC  96
        |||||||||| ||| ||||||||||||||| |||||||||||||||||
seq2  GATGGAAGCTTACCGAACAAGGTAGCCTGGCACCACAACAGTAAGGAGGC  99

seq1  CCTGCCTCGGACAA-GATGAAGGAGAAAACCAGCACCCAAGTTTTTAAGT  145
      |||||||||||||| ||||||| || || |||||||||||| ||||||||
seq2  CCTGCCTCGGACAAGGATGAAGAAG-AACCCAGCACCCAAG-TTTTAAGT  147

seq1  GGGGATGTGAGCTTCGCAGGTGTTTGTTTTGGGAATGGCTTCTTAGGGCC  195
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  GGGGATGTGAGCTTCGCA-GTG-TTGTTTTGGGAATGGCTTCTTAGGGCC  195

seq1  CTGTCGGACTGACTCACACATCATACTGGGAGGCCAGCCCACAGTTGGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGACTGACTCACACATCATACTGGGAGGCCAGCCCACAGTTGGCT  245

seq1  CTGTGGTGGCTATAGAATCTGTTTTCCAGGTCAATGTGGGTCTCCCCGAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGCTATAGAATCTGTTTTCCAGGTCAATGTGGGTCTCCCCGAT  295

seq1  GAGGTCATCTGAACCCACGAGGTCATGGTCGAATACGGCCACAGTCAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATCTGAACCCACGAGGTCATGGTCGAATACGGCCACAGTCAGCT  345

seq1  CTGGCTGGGCTGGGAGGGAGACGCTCAGCTCCAGGACCCTGGGCAGGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGCTGGGAGGGAGACGCTCAGCTCCAGGACCCTGGGCAGGAAG  395

seq1  GGAAATTGACTAACCACAGCTCCATGCCCTCAGAGGAGACCTGGGTGGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGACTAACCACAGCTCCATGCCCTCAGAGGAGACCTGGGTGGCA  445

seq1  GTGTCCAGCCCTCGTCACAGCCGCCTAGGCAAGAAGCTGTGGAGCCGGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGCCCTCGTCACAGCCGCCTAGGCAAGAAGCTGTGGAGCCGGAG  495

seq1  ACGCCCCCATTCCCAAGCCCAGAGCCCAGCCTCACTCTCCAAAGATGGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCCATTCCCAAGCCCAGAGCCCAGCCTCACTCTCCAAAGATGGGG  545

seq1  TTGAGTTGCTTGGGGATGTAGCGTTCCTTAGTGTCCCGCTGCTCCTTGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGCTTGGGGATGTAGCGTTCCTTAGTGTCCCGCTGCTCCTTGCC  595

seq1  AGCGCTAACCACCACATAGGGGTCTGCCTTGCCATTGGGGTCTGCAGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTAACCACCACATAGGGGTCTGCCTTGCCATTGGGGTCTGCAGGAG  645

seq1  CCAGGTTGGTAGCCTAGGGAGTAGAAGCCAAATCCAGTGGAGTCAGAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGTAGCCTAGGGAGTAGAAGCCAAATCCAGTGGAGTCAGAAGG  695

seq1  TCTAGCATCCTGGAAGCCCAGGCCCTTGTTGGACCTAATGTCAGGATTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATCCTGGAAGCCCAGGCCCTTGTTGGACCTAATGTCAGGATTTT  745

seq1  ATGAGATGCTGGAAGTCAAACACAGGCCCTCCTCCTCGCTAGCCAACTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCTGGAAGTCAAACACAGGCCCTCCTCCTCGCTAGCCAACTGC  795

seq1  CACATCACAGCCCCTGGCTCTTCTTCATCAAATTGTAAGAAATAAATCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACAGCCCCTGGCTCTTCTTCATCAAATTGTAAGAAATAAATCCT  845

seq1  TACAGCCTGTTCATGTAGAAGGTTTAAAACCCATCGGAGAATGGCAAGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTGTTCATGTAGAAGGTTTAAAACCCATCGGAGAATGGCAAGTA  895

seq1  AGCTAGAGACAAGAGGCCGGTCTCCAGCAGTTGGTGCCTAGCTCATGTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGACAAGAGGCCGGTCTCCAGCAGTTGGTGCCTAGCTCATGTTA  945

seq1  ACAATTCAGCCTAAGGTTGAAAAGGTAGAAAAATCTACTGTGTGACTCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAGCCTAAGGTTGAAAAGGTAGAAAAATCTACTGTGTGACTCAG  995

seq1  CCATAGGATGAGCCCATAGGAGGAGATTAGGGGAGGGGACAATACTAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGATGAGCCCATAGGAGGAGATTAGGGGAGGGGACAATACTAGAC  1045

seq1  ACCAGGAAGATCTGTCCTATCTCAAGAATTC  1076
      |||||||||||||||||||||||||||||||
seq2  ACCAGGAAGATCTGTCCTATCTCAAGAATTC  1076