BAC Information

Click to search

BAC

Clone NameB6Ng01-165L02
Chromosome2 (Build37)
Map Location 50,843,740 - 51,025,037
singlet/doubletdoublet
Overlap geneRnd3
Upstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165L02.bB6Ng01-165L02.g
ACCDH957683DH957684
length1,0551,138
definitionDH957683|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L02, 5' end.DH957684|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,843,740 - 50,844,799)(51,023,902 - 51,025,037)
sequence
gaattcaagactcttccttttctgtgtcaaggttgaacttcaccacagtt
actctactgtgtgctggaggaaaggtggcagtgtaaccctaaggtttctg
aggttttgcaaggccgatcctctaatcatctgcagggaatcctgaggaag
ttgtgacctttcatggagagaagtcagccattttcggaaccacaaagcac
agagacctggaggttgaatgtataccggtttctctttccatttcagactc
ctcttttatccttgtcctaaactgctggggtagagtacgcagtcttctct
ggaattctattgtagtgaagccgtggcacagattttcgtgttctccggcc
atctggttgcagaaaaaagtctctgctgtcaggaaaaatcttcattccat
agtgatactttctttcctccactggtataagcaagcatcctttcattcca
cagttccttaataatatcttaccaggctgctctaggccgaggacactgca
aagatcaggttttcgcgcactcccgtcccatcctgacctgccaggcatgg
tgcctgcaccaccgcagcagacaggagcaaccacccctccactcactaaa
caaaggacccaggctgccattcacccagctagaaagagcactttacgttt
agcctattcttacttgcttttctttttttctctttttaaatatatacgaa
aggattttctagaaatggaatttgtaagtatccattagtgttctgcaggt
gattagcatgttcggaggtaccacaacttctcaatgaaaacatctggact
gcagcagcaattatttactgaaaacatcactgcaataagtttaagccatt
agttctgactctcccccacacttacccatgggaattctttcaacatcagt
taacactgctgattgtcaagtgggggggggggcggtaattagcctctctc
taatgtcacatctaggaccctctttcgtaacagtgaagagtggaatttgc
cttcaggcactcatggccactccttgtcaggactttcactgtgatgagaa
atgaa
gaattccattaactggactaagcacttgcttgtttgattattttattatt
tttcacatattttcttccctttacacataatgttttgacttgattttcta
aaaatgttaaatttcctcctcttacaacccttttattattttttaactat
gtcttcaaattttcaggagctctttcttcatttttgtccgtcccagaatg
tgtcttttgtggatttaagatcatttctactctatgaatgcctctgcaga
ttttttgctttattctcacttgctgcttaaattgacttatatttctctgg
gcttttatgttctatttacttctttctttttgcactgtaagtttgccaca
actgccttttgattttatttgttttattatacttatgggaaaggtaatat
aaaattcatgctagctttagtacaggaaaggaattttctaccaataacct
ttctgccgaaaactggcagggaatgggcaatcctgctttggtacctctaa
gaggcagaatccagtggctttctatgtagaatgacaactcccataccctc
tgccctaacttcccctgagcagtggcttcagtttctcaaggaggactcct
ctaacttctgtggtcatggtggtcatggttgagtgataagcagaaacttg
gtcctggccatcttgtggagatcaatcgaaatgtggtccatatatttttt
actgccatcattgcacccattgtctttctctccatcactgcctggtacct
cttcatcttaatcttctttgggattcttcaggaacaataagttccaacca
ggaatattaatgaacttacaccagtgttttatactgatcaactttatgtt
ctatgaaacagtctactgtatgtccatgcatgtcttccaagagcatgttt
agatcacttgtgtttgaagcctaaccctctttatttttggcatttcatgt
gaaatggaatagtcaagtaggaaaggaaagatgcatgccatccaccatct
agaattaaaagtcacaagtaagcctaataaaaacaacttctcatcactgg
ttagcaacatatcctcgaactaaattactacaccacaaagtaacaccgtc
cactagttctttatacactcttaacctttatgctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50843740_50844799
seq2: B6Ng01-165L02.b_45_1099

seq1  GAATTCAAGACTCTTCCTTTTCTGTGTCAAGGTTGAACTTCACCACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTCTTCCTTTTCTGTGTCAAGGTTGAACTTCACCACAGTT  50

seq1  ACTCTACTGTGTGCTGGAGGAAAGGTGGCAGTGTAACCCTAAGGTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTGTGTGCTGGAGGAAAGGTGGCAGTGTAACCCTAAGGTTTCTG  100

seq1  AGGTTTTGCAAGGCCGATCCTCTAATCATCTGCAGGGAATCCTGAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGCAAGGCCGATCCTCTAATCATCTGCAGGGAATCCTGAGGAAG  150

seq1  TTGTGACCTTTCATGGAGAGAAGTCAGCCATTTTCGGAACCACAAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTTTCATGGAGAGAAGTCAGCCATTTTCGGAACCACAAAGCAC  200

seq1  AGAGACCTGGAGGTTGAATGTATACCGGTTTCTCTTTCCATTTCAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTGGAGGTTGAATGTATACCGGTTTCTCTTTCCATTTCAGACTC  250

seq1  CTCTTTTATCCTTGTCCTAAACTGCTGGGGTAGAGTACGCAGTCTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATCCTTGTCCTAAACTGCTGGGGTAGAGTACGCAGTCTTCTCT  300

seq1  GGAATTCTATTGTAGTGAAGCCGTGGCACAGATTTTCGTGTTCTCCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTATTGTAGTGAAGCCGTGGCACAGATTTTCGTGTTCTCCGGCC  350

seq1  ATCTGGTTGCAGAAAAAAGTCTCTGCTGTCAGGAAAAATCTTCATTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTGCAGAAAAAAGTCTCTGCTGTCAGGAAAAATCTTCATTCCAT  400

seq1  AGTGATACTTTCTTTCCTCCACTGGTATAAGCAAGCATCCTTTCATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACTTTCTTTCCTCCACTGGTATAAGCAAGCATCCTTTCATTCCA  450

seq1  CAGTTCCTTAATAATATCTTACCAGGCTGCTCTAGGCCGAGGACACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTTAATAATATCTTACCAGGCTGCTCTAGGCCGAGGACACTGCA  500

seq1  AAGATCAGGTTTTCGCGCACTCCCGTCCCATCCTGACCTGCCAGGCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGGTTTTCGCGCACTCCCGTCCCATCCTGACCTGCCAGGCATGG  550

seq1  TGCCTGCACCACCGCAGCAGACAGGAGCAACCACCCCTCCACTCACTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCACCACCGCAGCAGACAGGAGCAACCACCCCTCCACTCACTAAA  600

seq1  CAAAGGACCCAGGCTGCCATTCACCCAGCTAGAAAGAGCACTTTACGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACCCAGGCTGCCATTCACCCAGCTAGAAAGAGCACTTTACGTTT  650

seq1  AGCCTATTCTTACTTGCTTTTCTTTTTTTCTCTTTTTAAATATATACGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTCTTACTTGCTTTTCTTTTTTTCTCTTTTTAAATATATACGAA  700

seq1  AGGATTTTCTAGAAATGGAATTTGTAAGTATCCATTAGTGTTCTGCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCTAGAAATGGAATTTGTAAGTATCCATTAGTGTTCTGCAGGT  750

seq1  GATTAGCAGGTTCGGAGGTACCACAACTTCTCAATGAAAACATCTGGACT  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCATGTTCGGAGGTACCACAACTTCTCAATGAAAACATCTGGACT  800

seq1  GCAGCAGCAATTATTTACTGAAAACATCACTGCAATAAGTTTAAGCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAATTATTTACTGAAAACATCACTGCAATAAGTTTAAGCCATT  850

seq1  AGTTCTGACTCTCCCCCACACTTACCCATGGGAATTCTTTCAACATCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGACTCTCCCCCACACTTACCCATGGGAATTCTTTCAACATCAGT  900

seq1  TAACACTGCTGATTGTCAAGT-GGGGGGGGGGCGGTAATTAGCCTCTTCT  949
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TAACACTGCTGATTGTCAAGTGGGGGGGGGGGCGGTAATTAGCCTC-TCT  949

seq1  CTAATGTCACATCTAGGACCCTCTTTCGTAACAGGTGAAGAGTGGAATTT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CTAATGTCACATCTAGGACCCTCTTTCGTAACA-GTGAAGAGTGGAA-TT  997

seq1  TGCCTTCAGGGCACTCATTGCCACTCCTTGTCAGGGCTCTCACTGTGGAT  1049
      |||||||| ||||||||| |||||||||||||||| || ||||||| |||
seq2  TGCCTTCA-GGCACTCATGGCCACTCCTTGTCAGGACTTTCACTGT-GAT  1045

seq1  GAGCAAATGAA  1060
      ||| |||||||
seq2  GAG-AAATGAA  1055

seq1: chr2_51023902_51025037
seq2: B6Ng01-165L02.g_67_1204 (reverse)

seq1  AGAGAG-ATAAAGGTAAAGA-TGTAATAAAGAACTGAGT-GAC-GTGTTA  46
      |||||| |||||||| |||| ||| |||||||||| ||| ||| ||||||
seq2  AGAGAGCATAAAGGTTAAGAGTGT-ATAAAGAACT-AGTGGACGGTGTTA  48

seq1  CTTTGT-GTGTAGTAAATATGTCTGAGGATATGTTGCTAAACCAGTGATG  95
      |||||| ||||||||| |  ||  |||||||||||||| |||||||||||
seq2  CTTTGTGGTGTAGTAATTTAGTTCGAGGATATGTTGCT-AACCAGTGATG  97

seq1  AGAAGTTGTTTTTA-TAAGCTTACTTGTGACTTTTAATTCTAGATGGTGG  144
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTTTTTATTAGGCTTACTTGTGACTTTTAATTCTAGATGGTGG  147

seq1  ATGGCATGCATCTTTCTTTTCCTACTTGACTATTCCATTTCACATGAAAT  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGGCATGCATCTTTCCTTTCCTACTTGACTATTCCATTTCACATGAAAT  197

seq1  GCCAAAAATAAAGAGGGTTAGGCTTCAAAACACAAGTGATCTAAACATGC  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCAAAAATAAAGAGGGTTAGGCTTC-AAACACAAGTGATCTAAACATGC  246

seq1  TCTTGGAAGACATGCATGGACATACAGTAGACTGTTTCATAGAACATAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAGACATGCATGGACATACAGTAGACTGTTTCATAGAACATAAA  296

seq1  GTTGATCAGTATAAAACACTGGTGTAAGTTCATTAATATTCCTGGTTGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCAGTATAAAACACTGGTGTAAGTTCATTAATATTCCTGGTTGGA  346

seq1  ACTTATTGTTCCTGAAGAATCCCAAAGAAGATTAAGATGAAGAGGTACCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGTTCCTGAAGAATCCCAAAGAAGATTAAGATGAAGAGGTACCA  396

seq1  GGCAGTGATGGAGAGAAAGACAATGGGTGCAATGATGGCAGTAAAAAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGATGGAGAGAAAGACAATGGGTGCAATGATGGCAGTAAAAAATA  446

seq1  TATGGACCACATTTCGATTGATCTCCACAAGATGGCCAGGACCAAGTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACCACATTTCGATTGATCTCCACAAGATGGCCAGGACCAAGTTTC  496

seq1  TGCTTATCACTCAACCATGACCACCATGACCACAGAAGTTAGAGGAGTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCACTCAACCATGACCACCATGACCACAGAAGTTAGAGGAGTCC  546

seq1  TCCTTGAGAAACTGAAGCCACTGCTCAGGGGAAGTTAGGGCAGAGGGTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAAACTGAAGCCACTGCTCAGGGGAAGTTAGGGCAGAGGGTAT  596

seq1  GGGAGTTGTCATTCTACATAGAAAGCCACTGGATTCTGCCTCTTAGAGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGTCATTCTACATAGAAAGCCACTGGATTCTGCCTCTTAGAGGT  646

seq1  ACCAAAGCAGGATTGCCCATTCCCTGCCAGTTTTCGGCAGAAAGGTTATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCAGGATTGCCCATTCCCTGCCAGTTTTCGGCAGAAAGGTTATT  696

seq1  GGTAGAAAATTCCTTTCCTGTACTAAAGCTAGCATGAATTTTATATTACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAATTCCTTTCCTGTACTAAAGCTAGCATGAATTTTATATTACC  746

seq1  TTTCCCATAAGTATAATAAAACAAATAAAATCAAAAGGCAGTTGTGGCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATAAGTATAATAAAACAAATAAAATCAAAAGGCAGTTGTGGCAA  796

seq1  ACTTACAGTGCAAAAAGAAAGAAGTAAATAGAACATAAAAGCCCAGAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGTGCAAAAAGAAAGAAGTAAATAGAACATAAAAGCCCAGAGAA  846

seq1  ATATAAGTCAATTTAAGCAGCAAGTGAGAATAAAGCAAAAAATCTGCAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTCAATTTAAGCAGCAAGTGAGAATAAAGCAAAAAATCTGCAGA  896

seq1  GGCATTCATAGAGTAGAAATGATCTTAAATCCACAAAAGACACATTCTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCATAGAGTAGAAATGATCTTAAATCCACAAAAGACACATTCTGG  946

seq1  GACGGACAAAAATGAAGAAAGAGCTCCTGAAAATTTGAAGACATAGTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGACAAAAATGAAGAAAGAGCTCCTGAAAATTTGAAGACATAGTTAA  996

seq1  AAAATAATAAAAGGGTTGTAAGAGGAGGAAATTTAACATTTTTAGAAAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAAGGGTTGTAAGAGGAGGAAATTTAACATTTTTAGAAAAT  1046

seq1  CAAGTCAAAACATTATGTGTAAAGGGAAGAAAATATGTGAAAAATAATAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAAACATTATGTGTAAAGGGAAGAAAATATGTGAAAAATAATAA  1096

seq1  AATAATCAAACAAGCAAGTGCTTAGTCCAGTTAATGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAAACAAGCAAGTGCTTAGTCCAGTTAATGGAATTC  1138