BAC Information

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BAC

Clone NameB6Ng01-165O11
Chromosome2 (Build37)
Map Location 24,735,696 - 24,886,226
singlet/doubletdoublet
Overlap geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneNelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O11.bB6Ng01-165O11.g
ACCDH957835DH957836
length1,0721,046
definitionDH957835|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O11, 5' end.DH957836|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,885,149 - 24,886,226)(24,735,696 - 24,736,759)
sequence
gaattccaaaacagcaagaactacatgaaaagactgtgtcaaaaatgaaa
tggaacaaagccaacaaaaatttaaaccatatataatatatactatacat
taagtttttattttaagaatactttataagctggacatggtggcacacgc
ctttaatcccagcactcaagaggcagaggcaggcagatttctgagttcaa
ggccagcctggtctacaaagtgagttccaggacagcctgggctatacaga
gaaaccctgtctcgaaaaaacaaaaacaaaaacaaaaaaaaaaaaatagt
ttataaataatagatactgtattatctttcaatttcacagatctttggtt
tgtattatttaatgttttatatatcagtgttctcgaccttcctcatgctg
caaccctttaatacagttcctcatgttgtggtgaccctaaccataaaatt
attttgttgctacctcataactgtaattttcctgctgttacaaattgtaa
tgtaaatatctgataagtaggttatcttatatgtgaacccctaaaggggc
tatgcccctcaggtaactcagcatctcaggtaactgctgagccatcctgc
cagccctaggctctaaaatgtaatagcttcttcctgatgcgggatccctc
tgggcttcatcctaggactaatctattccaggggctggcccagagagtgc
tcttgttctaagccttgccccaccagagttacctggtcgcagctaaaggg
cactttccagatgctcaacagctccatggccatggcctctgacaccactc
cagcaagcagagtgctataaacacagtcctgtagcaggaagaccctccta
acaaagtctcgggtccccatctgaaggattcctagcacattatgtactac
tatatactctgtgaccatgcagatctcagagcctcaaaatccctcacttg
tagagagtggcctttgagtagagcctccctgggttcaagatccatgtaag
gtagagagcgactggtgactttttccttcaggaatgtctgtgcttacgat
gcactgaggcatgttggtgctc
gaattcaattgaaatgacacatcaaacttcggttcatctaaatgaaaact
cagggtaagggggaagcaactgtataagactagcaagcaggaggagatag
agaaaagagctgctgcacaccatggcaattatactcgtggatacctaaca
cagaaataggaaaaattatctacagacaaacataagtggtcacaactcta
actgcccaagactggacacactaactcagaagacagaaggcaaaagatcg
ctgtttgaagcaagccagccaaggtctgcctagcaaattcaagacaagac
ctggacacctaagaaggaatggaggagagcaggacaggggacatgaacag
acagacatgggaccagtgcctcataactgacaagacgcctcattggcaga
gaacccttacccaggaatcatggagctgagaatttatttacctctgtgag
ttgaaaaccagaagtgcatgtgtaaaagggagggaagggaagcaagatta
atcttaaaagctaataaaatactttataataaaaatgtaaaaggttattt
atccatgaacaacaacaaagttggcaaatgagcaccgagaagagcagcac
atttgaaagttcaaggaagttcaagttacaatcctggcaaggcactgaca
cagacaccaccagcagcagcagcacaaatgctggcaaggacaccagaacc
caggtagctccaacaataaagcttgctatcaacactgatgacctaaattc
aatccccaagacccacactgtgaaaggatagagccaagtcttgcaagctg
cccatgtgactatggtaaacatgcactgtgttactcgcatacacattcat
gtacaaaaaatgaataaacaaataaatataattttgaaccttttaaatga
gagactggaaaatgcacatatatacgttaatattattttcaagtttctat
ttcaaccctttcttgggttttctactatcaactaatgtcaactttttaat
gccttgaattttttctttacattattggatttaattaatataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24885149_24886226
seq2: B6Ng01-165O11.b_47_1118 (reverse)

seq1  GAGCTCCAACATGCCCTCAGTGCCATCGGTAAGCCACAGACATGTCCTGA  50
      |||| |||||||| |||||||| |||| ||||| ||||||||| ||||||
seq2  GAGCACCAACATG-CCTCAGTG-CATC-GTAAG-CACAGACAT-TCCTGA  45

seq1  AGGTAAAAGTCACCAGTCGCTCTCTACCCTGACAATGGATCTTG-AGCCA  99
      ||| |||||||||||||||||||||| ||| || |||||||||| | |||
seq2  AGGAAAAAGTCACCAGTCGCTCTCTA-CCTTAC-ATGGATCTTGAACCCA  93

seq1  GGGAGGCTCTACTCAAAGGGCACTCTCTACAAGTGAGGGATTTTGAGGCT  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGAGGCTCTACTCAAAGGCCACTCTCTACAAGTGAGGGATTTTGAGGCT  143

seq1  CTGAGATCTGCATGGTCACAGAGTATATAGTAGTACATAATGTGCTAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTGCATGGTCACAGAGTATATAGTAGTACATAATGTGCTAGGA  193

seq1  ATCCTTCAGATGGGGGACCCGAGACTTTGTTAGGAGGGTCTTCCTGCTAC  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAGAT-GGGGACCCGAGACTTTGTTAGGAGGGTCTTCCTGCTAC  242

seq1  AGGACTGTGTTTATAGCACTCTGCTTGCTGGAGTGGTGTCAGAGGCCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGTTTATAGCACTCTGCTTGCTGGAGTGGTGTCAGAGGCCATG  292

seq1  GCCATGGAGCTGTTGAGCATCTGGAAAGTGCCC-TTAGCTGCGACCAGGT  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCATGGAGCTGTTGAGCATCTGGAAAGTGCCCTTTAGCTGCGACCAGGT  342

seq1  AACTCTGGTGGGGCAAGGCTTAGAACAAGAGCACTCTCTGGGCCAGCCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTGGGGCAAGGCTTAGAACAAGAGCACTCTCTGGGCCAGCCCC  392

seq1  TGGAATAGATTAGTCCTAGGATGAAGCCCAGAGGGATCCCGCATCAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGATTAGTCCTAGGATGAAGCCCAGAGGGATCCCGCATCAGGAA  442

seq1  GAAGCTATTACATTTTAGAGCCTAGGGCTGGCAGGATGGCTCAGCAGTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATTACATTTTAGAGCCTAGGGCTGGCAGGATGGCTCAGCAGTTA  492

seq1  CCTGAGATGCTGAGTTACCTGAGGGGCATAGCCCCTTTAGGGGTTCACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGCTGAGTTACCTGAGGGGCATAGCCCCTTTAGGGGTTCACAT  542

seq1  ATAAGATAACCTACTTATCAGATATTTACATTACAATTTGTAACAGCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAACCTACTTATCAGATATTTACATTACAATTTGTAACAGCAGG  592

seq1  AAAATTACAGTTATGAGGTAGCAACAAAATAATTTTATGGTTAGGGTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAGTTATGAGGTAGCAACAAAATAATTTTATGGTTAGGGTCAC  642

seq1  CACAACATGAGGAACTGTATTAAAGGGTTGCAGCATGAGGAAGGTCGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATGAGGAACTGTATTAAAGGGTTGCAGCATGAGGAAGGTCGAGA  692

seq1  ACACTGATATATAAAACATTAAATAATACAAACCAAAGATCTGTGAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATATATAAAACATTAAATAATACAAACCAAAGATCTGTGAAATT  742

seq1  GAAAGATAATACAGTATCTATTATTTATAAACTATTTTTTTTTTTTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAATACAGTATCTATTATTTATAAACTATTTTTTTTTTTTTGTT  792

seq1  TTTGTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCAGGCTGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCAGGCTGTC  842

seq1  CTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCT  892

seq1  GCCTCTGCCTCTTGAGTGCTGGGATTAAAGGCGTGTGCCACCATGTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCTTGAGTGCTGGGATTAAAGGCGTGTGCCACCATGTCCAG  942

seq1  CTTATAAAGTATTCTTAAAATAAAAACTTAATGTATAGTATATATTATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGTATTCTTAAAATAAAAACTTAATGTATAGTATATATTATAT  992

seq1  ATGGTTTAAATTTTTGTTGGCTTTGTTCCATTTCATTTTTGACACAGTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAAATTTTTGTTGGCTTTGTTCCATTTCATTTTTGACACAGTCT  1042

seq1  TTTCATGTAGTTCTTGCTGTTTTGGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  TTTCATGTAGTTCTTGCTGTTTTGGAATTC  1072

seq1: chr2_24735696_24736759
seq2: B6Ng01-165O11.g_71_1116

seq1  GAATTCAATTGAAATGACACATCAAACTTCGGTTCATCTAAATGAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGAAATGACACATCAAACTTCGGTTCATCTAAATGAAAACT  50

seq1  CAGGGTAAGGGGGAAGCAACTGTATAAGACTAGCAAGCAGGAGGAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAGGGGGAAGCAACTGTATAAGACTAGCAAGCAGGAGGAGATAG  100

seq1  AGAAAAGAGCTGCTGCACACCATGGCAATTATACTCGTGGATACCTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGCTGCTGCACACCATGGCAATTATACTCGTGGATACCTAACA  150

seq1  CAGAAATAGGAAAAATTATCTACAGACAAACATAAGTGGTCACAACTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGGAAAAATTATCTACAGACAAACATAAGTGGTCACAACTCTA  200

seq1  ACTGCCCAAGACTGGACACACTAACTCAGAAGACAGAAGGCAAAAGATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAAGACTGGACACACTAACTCAGAAGACAGAAGGCAAAAGATCG  250

seq1  CTGTTTGAAGCAAGCCAGCCAAGGTCTGCCTAGCAAATTCAAGACAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAAGCAAGCCAGCCAAGGTCTGCCTAGCAAATTCAAGACAAGAC  300

seq1  CTGGACACCTAAGAAGGAATGGAGGAGAGCAGGACAGGGGACATGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACCTAAGAAGGAATGGAGGAGAGCAGGACAGGGGACATGAACAG  350

seq1  ACAGACATGGGACCAGTGCCTCATAACTGACAAGACGCCTCATTGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGGGACCAGTGCCTCATAACTGACAAGACGCCTCATTGGCAGA  400

seq1  GAACCCTTACCCAGGAATCATGGAGCTGAGAATTTATTTACCTCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTACCCAGGAATCATGGAGCTGAGAATTTATTTACCTCTGTGAG  450

seq1  TTGAAAACCAGAAGTGCATGTGTAAAAGGGAGGGAAGGGAAGCAAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACCAGAAGTGCATGTGTAAAAGGGAGGGAAGGGAAGCAAGATTA  500

seq1  ATCTTAAAAGCTAATAAAATACTTTATAATAAAAATGTAAAAGGTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAGCTAATAAAATACTTTATAATAAAAATGTAAAAGGTTATTT  550

seq1  ATCCATGAACAACAACAAAGTTGGCAAATGAGCACCGAGAAGAGCAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAACAACAACAAAGTTGGCAAATGAGCACCGAGAAGAGCAGCAC  600

seq1  ATTTGAAAGTTCAAGGAAGTTCAAGTTACAATCCTGGCAAGGCACTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGTTCAAGGAAGTTCAAGTTACAATCCTGGCAAGGCACTGACA  650

seq1  CAGACACCACCAGCAGCAGCAGCACAAATGCTGGCAAGGACACCAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCACCAGCAGCAGCAGCACAAATGCTGGCAAGGACACCAGAACC  700

seq1  CAGGTAGCTCCAACAATAAAGCTTGCTATCAACACTGATGACCTAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTCCAACAATAAAGCTTGCTATCAACACTGATGACCTAAATTC  750

seq1  AATCCCCAAGACCCACACTGTGAAAGGATAGAGCCAAGTCTTGCAAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCAAGACCCACACTGTGAAAGGATAGAGCCAAGTCTTGCAAGCTG  800

seq1  CCCATGTGACTATGGTAAACATGCACTGTG-TACTCGCATACACATTCAT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCATGTGACTATGGTAAACATGCACTGTGTTACTCGCATACACATTCAT  850

seq1  GTACAAAAAATGAATAAACAAATAAAATATAATTTTGAAACTTTTTAAAT  899
      ||||||||||||||||||||||| ||||||||||||| ||| ||||||||
seq2  GTACAAAAAATGAATAAACAAAT-AAATATAATTTTG-AACCTTTTAAAT  898

seq1  GAGAAGACTGGAAAATGCACATATATACGTTAATATTATTTTCAAAGTTT  949
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAG-AGACTGGAAAATGCACATATATACGTTAATATTATTTTC-AAGTTT  946

seq1  CCTATTTCAAAACCCTTTCTTGGGTTTTTCCTACTATCATATCTTAATGT  999
       |||||||  ||||||||||||||||||  |||||||||     ||||||
seq2  -CTATTTC--AACCCTTTCTTGGGTTTT--CTACTATCA---ACTAATGT  988

seq1  ACAACTTTTTAATAGTCTTGGAATTTTTTCTTTTACTATTATTGTATTTT  1049
       |||||||||||| | ||| |||||||||| ||||| ||||||| | |||
seq2  -CAACTTTTTAAT-GCCTT-GAATTTTTTC-TTTAC-ATTATTGGA-TTT  1032

seq1  AATTATATATAATAA  1064
      ||||| |||||||||
seq2  AATTA-ATATAATAA  1046