BAC Information

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BAC

Clone NameB6Ng01-166A19
Chromosome2 (Build37)
Map Location 27,285,429 - 27,443,112
singlet/doubletdoublet
Overlap geneD2Bwg1423e, Brd3, Wdr5
Upstream geneAU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2
Downstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A19.bB6Ng01-166A19.g
ACCDH957937DH957938
length1,1311,059
definitionDH957937|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A19, 5' end.DH957938|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,285,429 - 27,286,564)(27,442,049 - 27,443,112)
sequence
gaattcttctaccagagagagacttgaccaagactctggctagcagaaaa
tggatttgaactaggttctcaacatggagtccattttcccattgctccca
gcagagctgtttgtttttactccaggctgacctgaccgtaaggcttaggt
gtcagcaggagagaaatcacagaacacaacctgtctctgccctccagggc
tcctgcagtgtcccaacgacccccacggtgaaacactggtcacctggcaa
cgccaggacaggtctctgaccagatcgcaagtacctctgagcacacagct
gcctcagagaaagcatctacagacactggactgtcccagaaactgagggc
ctcccctccagaccagtcattttgactcttggttcatgtgtccccaacaa
acacccagacacattgcatgctctctgtgcttttcatcaaaaaggccacc
atcgaaggtctctcgctcacagggtccagcaaggcttcgaattcaaagga
ataccagcattggccttccttttctctaccacctggtctacagccctgaa
cctttttttacatctttttactggtccctcaatccatctacctggccctt
tggatacttagcctctgatctacttagtccttcattcccctgctcagccc
tcccgtgtcccttccctctgtctttcctttcacatggctcaggccagcct
cccacctgtccatcactacctgccccactcctacccacccacttattacc
tgcatccacccacgcaacctaccaactggaccatactgactgcgccctgg
cttcctttccggagaaggggaagtggatgttttggtggagtgagggattt
cttctcacatccaacccacatgaacacacattttgcaaattccatttgga
gctccatcagcaaattcagctgtcacaatttcccaggaaaatataggtgt
agggaaagaccatctgggcccgcctagaaaacgaagcacgccttgccttg
ctggttgatgggtggtgggcgtcttgcttttcctttgaaaaacaaaatgg
agacctttcctggctgttgctccaattaaattaagcccaaggccaagctc
aagaactgaccactctcccgagggtctctga
gaattctttgattttttttttctgtctctttttgtctcttctcaccagag
ctctgttctaggccccaacttcttgctgcctgctgggtccctgtgccaca
agtgtctgtatggtgaccagatgttgcattgtaaacacacttaggctcag
acctgagtgagtctcaatcctgctcttgagttgcccataccccgcaggct
aacccaagtcccccacatcccctccagccctcactactcacccattagaa
agcaaggcctaggatggccctggaccctcttgggacgggttcctgtgttg
cacaagagccttgtaggctccagaataatccaatttcagaagagaagaag
gaggaagaagagggaggagggagagaggaggtgaccaaaggctccgcaga
ggaagcttccctcaagacagccatttcgtacttatttctccattttatgt
tctaaaagatccccaaaacaaagaggtctattattttctgccttgtagat
attacagttatagcatgctatagctagatgacacaggaggtatggaatgc
aatcagatgtgtggagagctctgcgaggcaggctccttccttctcctagc
agctgggcgttggtcgtggtctcctgccatgctgttctgaccacaggacc
accagcacggctctcctctgcccctatctcttagccccaacatgatggca
ggctcttgcgctcacccaaccctcttccatcatgcttaggcaccatgcga
cttttcatttccaagtctggttaccacagatgcagagtgaaaaatgatcc
aataaacccagtaaatccaagcatctcagagcgaaaacacaataacctca
gctgaggcagacagtttcagccagatagattagccagcgtcggtggccct
ggtgactaggaaaagacactggaaggtcaccctgttggggagagagagag
gttagtcactgaacgagccatgttggggttgaagtagtgctggggactgg
ggctgcggcacccctccaatcctggcaagggctgaaatgggctgtgaagc
tgtctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_27285429_27286564
seq2: B6Ng01-166A19.b_39_1169

seq1  GAATTCTTCTACCAGAGAGAGACTTGACCAAGACTCTGGCTAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTACCAGAGAGAGACTTGACCAAGACTCTGGCTAGCAGAAAA  50

seq1  TGGATTTGAACTAGGTTCTCAACATGGAGTCCATTTTCCCATTGCTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGAACTAGGTTCTCAACATGGAGTCCATTTTCCCATTGCTCCCA  100

seq1  GCAGAGCTGTTTGTTTTTACTCCAGGCTGACCTGACCGTAAGGCTTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGTTTGTTTTTACTCCAGGCTGACCTGACCGTAAGGCTTAGGT  150

seq1  GTCAGCAGGAGAGAAATCACAGAACACAACCTGTCTCTGCCCTCCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGAGAGAAATCACAGAACACAACCTGTCTCTGCCCTCCAGGGC  200

seq1  TCCTGCAGTGTCCCAACGACCCCCACGGTGAAACACTGGTCACCTGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGTGTCCCAACGACCCCCACGGTGAAACACTGGTCACCTGGCAA  250

seq1  CGCCAGGACAGGTCTCTGACCAGATCGCAAGTACCTCTGAGCACACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGACAGGTCTCTGACCAGATCGCAAGTACCTCTGAGCACACAGCT  300

seq1  GCCTCAGAGAAAGCATCTACAGACACTGGACTGTCCCAGAAACTGAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAGAAAGCATCTACAGACACTGGACTGTCCCAGAAACTGAGGGC  350

seq1  CTCCCCTCCAGACCAGTCATTTTGACTCTTGGTTCATGTGTCCCCAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCAGACCAGTCATTTTGACTCTTGGTTCATGTGTCCCCAACAA  400

seq1  ACACCCAGACACATTGCATGCTCTCTGTGCTTTTCATCAAAAAGGCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGACACATTGCATGCTCTCTGTGCTTTTCATCAAAAAGGCCACC  450

seq1  ATCGAAGGTCTCTCGCTCACAGGGTCCAGCAAGGCTTCGAATTCAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGGTCTCTCGCTCACAGGGTCCAGCAAGGCTTCGAATTCAAAGGA  500

seq1  ATACCAGCATTGGCCTTCCTTTTCTCTACCACCTGGTCTACAGCCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCATTGGCCTTCCTTTTCTCTACCACCTGGTCTACAGCCCTGAA  550

seq1  CCTTTTTTTACATCTTTTTACTGGTCCCTCAATCCATCTACCTGGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTACATCTTTTTACTGGTCCCTCAATCCATCTACCTGGCCCTT  600

seq1  TGGATACTTAGCCTCTGATCTACTTAGTCCTTCATTCCCCTGCTCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTTAGCCTCTGATCTACTTAGTCCTTCATTCCCCTGCTCAGCCC  650

seq1  TCCCGTGTCCCTTCCCTCTGTCTTTCCTTTCACATGGCTCAGGCCAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGTCCCTTCCCTCTGTCTTTCCTTTCACATGGCTCAGGCCAGCCT  700

seq1  CCCACCTGTCCATCACTACCTGCCCCACTCCTACCCACCCACTTATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGTCCATCACTACCTGCCCCACTCCTACCCACCCACTTATTACC  750

seq1  TGCATCCACCCACGCAACCTACCAACTGGACCATACTGACTGCGCCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCACCCACGCAACCTACCAACTGGACCATACTGACTGCGCCCTGG  800

seq1  CTTCCTTTCCGGAGAAGGGGAAGTGGATGTTTTGGTGGAGTGAGGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCCGGAGAAGGGGAAGTGGATGTTTTGGTGGAGTGAGGGATTT  850

seq1  CTTCTCACATCCAACCCACATGAACACACATTTTGCAAATTCCATTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACATCCAACCCACATGAACACACATTTTGCAAATTCCATTTGGA  900

seq1  GCTCCATCAGGCAAATTCAGCTGTCACAATTTCCCAGGAAATTATAGGTG  950
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GCTCCATCA-GCAAATTCAGCTGTCACAATTTCCCAGGAAAATATAGGTG  949

seq1  TAGGGAAAGACCATCTGGCCCGCCCTAG-AGACGGAGCACGCCTTGCCTT  999
      |||||||||||||||||| ||  ||||| | ||| |||||||||||||||
seq2  TAGGGAAAGACCATCTGGGCCCGCCTAGAAAACGAAGCACGCCTTGCCTT  999

seq1  GCTGGGTGATGGGT-GTGGGCGCTCTTGCTTTTCCTTTGAAAAGACAAAA  1048
      ||||| |||||||| ||||||| |||||||||||||||||||| ||||||
seq2  GCTGGTTGATGGGTGGTGGGCG-TCTTGCTTTTCCTTTGAAAA-ACAAAA  1047

seq1  TGGAGACTTTTCACTGCTTGTTGCTTCAAATTCAAATTTAAGCCAAAGGC  1098
      ||||||| |||| |||  ||||||| ||| |   || ||||||| |||||
seq2  TGGAGACCTTTC-CTGGCTGTTGCTCCAATT---AAATTAAGCCCAAGGC  1093

seq1  CACAGTCTAGAGACTGACCACT-TCACTGAGGTCTCTGA  1136
      ||   || ||| |||||||||| || |   |||||||||
seq2  CAAGCTCAAGA-ACTGACCACTCTCCCGAGGGTCTCTGA  1131

seq1: chr2_27442049_27443112
seq2: B6Ng01-166A19.g_70_1128 (reverse)

seq1  AGGCAGAACAGCTTCACAGCCCATCTCAGCCCTTGCCAGGATTGGAGGGG  50
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGCAG-ACAGCTTCACAGCCCATTTCAGCCCTTGCCAGGATTGGAGGGG  49

seq1  TGGCCGCAG-CCCAGTCCCCAGCACTTACTTCAACCCCAACATGGCTCGT  99
      | ||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  T-GCCGCAGCCCCAGTCCCCAGCAC-TACTTCAACCCCAACATGGCTCGT  97

seq1  TCAGTGACTGACCCTCTCTCTCTCCCCAACAGGGTGACCCTTCCAGTGTC  149
      ||||||||| | ||||||||||||||||||||||||| ||||||||||||
seq2  TCAGTGACT-AACCTCTCTCTCTCCCCAACAGGGTGA-CCTTCCAGTGTC  145

seq1  CTTTCCTAGTCACCCAGGGCCACCGACGCTGGCCTAATCTATCTGGCTGA  199
       ||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTTTCCTAGTCA-CCAGGGCCACCGACGCTGG-CTAATCTATCTGGCTGA  193

seq1  AACTGTCTGCCTCAGCTGAGGTTATTGTG-TTTCGCTCTGAGATGCTTGG  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTGTCTGCCTCAGCTGAGGTTATTGTGTTTTCGCTCTGAGATGCTTGG  243

seq1  ATTTACTGGGTTTATTGGATCATTTTTCACTCTGCATCTGTGGTAACCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGGGTTTATTGGATCATTTTTCACTCTGCATCTGTGGTAACCAG  293

seq1  ACTTGGAAATGAAAAGTCGCATGGTGCCTAAGCATGATGGAAGAGGGTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAATGAAAAGTCGCATGGTGCCTAAGCATGATGGAAGAGGGTTG  343

seq1  GGTGAGCGCAAGAGCCTGCCATCATGTTGGGGCTAAGAGATAGGGGCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCGCAAGAGCCTGCCATCATGTTGGGGCTAAGAGATAGGGGCAGA  393

seq1  GGAGAGCCGTGCTGGTGGTCCTGTGGTCAGAACAGCATGGCAGGAGACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCGTGCTGGTGGTCCTGTGGTCAGAACAGCATGGCAGGAGACCA  443

seq1  CGACCAACGCCCAGCTGCTAGGAGAAGGAAGGAGCCTGCCTCGCAGAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAACGCCCAGCTGCTAGGAGAAGGAAGGAGCCTGCCTCGCAGAGCT  493

seq1  CTCCACACATCTGATTGCATTCCATACCTCCTGTGTCATCTAGCTATAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACATCTGATTGCATTCCATACCTCCTGTGTCATCTAGCTATAGC  543

seq1  ATGCTATAACTGTAATATCTACAAGGCAGAAAATAATAGACCTCTTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAACTGTAATATCTACAAGGCAGAAAATAATAGACCTCTTTGTT  593

seq1  TTGGGGATCTTTTAGAACATAAAATGGAGAAATAAGTACGAAATGGCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATCTTTTAGAACATAAAATGGAGAAATAAGTACGAAATGGCTGT  643

seq1  CTTGAGGGAAGCTTCCTCTGCGGAGCCTTTGGTCACCTCCTCTCTCCCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGAAGCTTCCTCTGCGGAGCCTTTGGTCACCTCCTCTCTCCCTC  693

seq1  CTCCCTCTTCTTCCTCCTTCTTCTCTTCTGAAATTGGATTATTCTGGAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTCTTCCTCCTTCTTCTCTTCTGAAATTGGATTATTCTGGAGC  743

seq1  CTACAAGGCTCTTGTGCAACACAGGAACCCGTCCCAAGAGGGTCCAGGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGCTCTTGTGCAACACAGGAACCCGTCCCAAGAGGGTCCAGGGC  793

seq1  CATCCTAGGCCTTGCTTTCTAATGGGTGAGTAGTGAGGGCTGGAGGGGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGGCCTTGCTTTCTAATGGGTGAGTAGTGAGGGCTGGAGGGGAT  843

seq1  GTGGGGGACTTGGGTTAGCCTGCGGGGTATGGGCAACTCAAGAGCAGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGACTTGGGTTAGCCTGCGGGGTATGGGCAACTCAAGAGCAGGAT  893

seq1  TGAGACTCACTCAGGTCTGAGCCTAAGTGTGTTTACAATGCAACATCTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCACTCAGGTCTGAGCCTAAGTGTGTTTACAATGCAACATCTGG  943

seq1  TCACCATACAGACACTTGTGGCACAGGGACCCAGCAGGCAGCAAGAAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATACAGACACTTGTGGCACAGGGACCCAGCAGGCAGCAAGAAGTT  993

seq1  GGGGCCTAGAACAGAGCTCTGGTGAGAAGAGACAAAAAGAGACAGAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTAGAACAGAGCTCTGGTGAGAAGAGACAAAAAGAGACAGAAAAA  1043

seq1  AAAAATCAAAGAATTC  1064
      ||||||||||||||||
seq2  AAAAATCAAAGAATTC  1059