BAC Information

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BAC

Clone NameB6Ng01-166D05
Chromosome2 (Build37)
Map Location 76,068,988 - 76,193,043
singlet/doubletdoublet
Overlap genePde11a, Cyct
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneDrbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166D05.bB6Ng01-166D05.g
ACCDH958044DH958045
length1,201977
definitionDH958044|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D05, 5' end.DH958045|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,068,988 - 76,070,183)(76,192,057 - 76,193,043)
sequence
gaattctccagaggaaaaccaagatgctgagtaccccaaatggcaagtgt
cacaaataggcgctatttaagagagctgccattaaccttcacttcatgca
cgattttcaatgttactttagttatttgaaactttcctgaagtttgacat
cttttcctaaaactatccccaggcttttaaggaccactgcagcacacagg
ggtcgtttgtgctatctacattaaacaaatgaagagctgcctctcaaacg
acatactctgtaaactagaagcatgttgtacaaaaatccaccattgacta
ggacaagaagtcaggcattgctccagtctaaagtgtaattcattctttag
tagtggatacaacttgtgtttacctagggaaatacctgtagattttttta
tccctcataccctcttttgttcctataagacaaaagttcagaatgggacc
catgctttcaattcttgtctctacttactaaaatcaattacgatgtgatg
atctactaccttacatttggaacttatatctaacaccgtaggatctgtgc
ccatgatcaaatcagatcctggccgaactcaacactgtagaaatcctgac
ttccaaacaggttttcctgagctaaaaacagtgttatttgtagtgctccc
tgaaaccaggttttcttgagatactttcaggagtttcgttgcatatttgc
ccccgtgcttatctactgactatgagagttaggtaaggcaaggcttaaag
agtttacaaaatctgctgtggagcctggatgtggagagtcaactccttgg
tgccagactcaatattttctttgtttttctatctttctcaacgaggatat
aacccctggcataatgtttcttaagaaataattgagtcacagttgcccac
atgcacacaaccctccgttcacaattttgtttttcacactctgtctggtg
gtgattttccttcaggcacggtccttgatgataggaagatgtgcggccaa
tcccaggaagtttagattacagatggagattgggaaagacaaaggatggt
gttttcgttttgtatcgtttcggttcttcgttgcttggagaaagaatatc
agcagcaagtatttctccacttaagttgcttattcagtttagaagcccaa
ctaagcatgttctgtccttagcagacctatcacggctcatatcagggtag
a
gaattcacttgcaaaccatttggcctcagattcactatgatcctcttgca
agtgctgggactataggtatggactccatggccagctgttttacatttct
ttttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttttctttcttttttttttgaattgaagtaaaactcatatga
catctagctaactaactctttcacaatatgtaatttattaacattatagc
attcaggatgctgtacaaagctgtacagtcaccacctctccctggtttca
aacttgttttaaattcctgggtttttgtttgtttgttttttctttttctt
tttctttttctttttctttttctttttctttttctttttctctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttcttttttgaaaaatatccatgactgacctagagctcatatg
tagaccaggctggccttgaactcacagaggtctacttgccactgcctctc
aagtgctgggattaaagacttgcaccaccatgcgtagccttcaaaacttt
tttaaaaggaagcatggtgcagcacctgcatgcagtaggcggctgctcct
ccttcccctgtcacccttggttcacgtatgtgggtcctatcaaacagtaa
gctctgtgaatgttattccaaagacttaagacttactttcaactttgtag
gtgttatctggtcagaagaaactttgatggaatatttggagaacccgaag
aaatatatccctggcactaaaatgatctttgctggtatcaaaaagaagag
tgagagagaagatctcattaagtatttaaacaggccacatcctcatgaag
tgagtagtatttcagcttcaaatattcgctaccagtttcaatatgtgttt
atagagcatatctgatctttgatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76068988_76070183
seq2: B6Ng01-166D05.b_47_1247

seq1  GAATTCTCCAGAGGAAAACCAAGATGCTGAGTACCCCAAATGGCAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAGGAAAACCAAGATGCTGAGTACCCCAAATGGCAAGTGT  50

seq1  CACAAATAGGCGCTATTTAAGAGAGCTGCCATTAACCTTCACTTCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAGGCGCTATTTAAGAGAGCTGCCATTAACCTTCACTTCATGCA  100

seq1  CGATTTTCAATGTTACTTTAGTTATTTGAAACTTTCCTGAAGTTTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTCAATGTTACTTTAGTTATTTGAAACTTTCCTGAAGTTTGACAT  150

seq1  CTTTTCCTAAAACTATCCCCAGGCTTTTAAGGACCACTGCAGCACACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTAAAACTATCCCCAGGCTTTTAAGGACCACTGCAGCACACAGG  200

seq1  GGTCGTTTGTGCTATCTACATTAAACAAATGAAGAGCTGCCTCTCAAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTTGTGCTATCTACATTAAACAAATGAAGAGCTGCCTCTCAAACG  250

seq1  ACATACTCTGTAAACTAGAAGCATGTTGTACAAAAATCCACCATTGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCTGTAAACTAGAAGCATGTTGTACAAAAATCCACCATTGACTA  300

seq1  GGACAAGAAGTCAGGCATTGCTCCAGTCTAAAGTGTAATTCATTCTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAAGTCAGGCATTGCTCCAGTCTAAAGTGTAATTCATTCTTTAG  350

seq1  TAGTGGATACAACTTGTGTTTACCTAGGGAAATACCTGTAGATTTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATACAACTTGTGTTTACCTAGGGAAATACCTGTAGATTTTTTTA  400

seq1  TCCCTCATACCCTCTTTTGTTCCTATAAGACAAAAGTTCAGAATGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATACCCTCTTTTGTTCCTATAAGACAAAAGTTCAGAATGGGACC  450

seq1  CATGCTTTCAATTCTTGTCTCTACTTACTAAAATCAATTACGATGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCAATTCTTGTCTCTACTTACTAAAATCAATTACGATGTGATG  500

seq1  ATCTACTACCTTACATTTGGAACTTATATCTAACACCGTAGGATCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTACCTTACATTTGGAACTTATATCTAACACCGTAGGATCTGTGC  550

seq1  CCATGATCAAATCAGATCCTGGCCGAACTCAACACTGTAGAAATCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCAAATCAGATCCTGGCCGAACTCAACACTGTAGAAATCCTGAC  600

seq1  TTCCAAACAGGTTTTCCTGAGCTAAAAACAGTGTTATTTGTAGTGCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACAGGTTTTCCTGAGCTAAAAACAGTGTTATTTGTAGTGCTCCC  650

seq1  TGAAACCAGGTTTTCTTGAGATACTTTCAGGAGTTTCGTTGCATATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGGTTTTCTTGAGATACTTTCAGGAGTTTCGTTGCATATTTGC  700

seq1  CCCCGTGCTTATCTACTGACTATGAGAGTTAGGTAAGGCAAGGCTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGCTTATCTACTGACTATGAGAGTTAGGTAAGGCAAGGCTTAAAG  750

seq1  AGTTTACAAAATCTGCTGTGGAGCCTGGATGTGGAGAGTCAACTCCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAAAATCTGCTGTGGAGCCTGGATGTGGAGAGTCAACTCCTTGG  800

seq1  TGCCAGACTCAATATTTTCTTTGTTTTTCTATCTTTCTCAACGAGGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACTCAATATTTTCTTTGTTTTTCTATCTTTCTCAACGAGGATAT  850

seq1  AACCCCTGGCATAATGTTTCTTAAGAAATAATTGAGTCACAGTTGCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGGCATAATGTTTCTTAAGAAATAATTGAGTCACAGTTGCCCAC  900

seq1  ATGCACACAACCCTCCGTTCACAATTTTGTTTTTTCACACTCTGTCTGGT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCACACAACCCTCCGTTCACAATTTTG-TTTTTCACACTCTGTCTGGT  949

seq1  GGTGATTTTCCTTCAGGCACGGTCCTTGATGATAGGAAGATGTGCGGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTCCTTCAGGCACGGTCCTTGATGATAGGAAGATGTGCGGCCA  999

seq1  ATCCCAGGAAGTTTAGATTACAGATGGAGATTGGGATAGACAAAGGATGG  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCCAGGAAGTTTAGATTACAGATGGAGATTGGGAAAGACAAAGGATGG  1049

seq1  TGTTTTCG-TTTGTATCGTTTCGTTTC-TCGTTGCTTGGAGAAAGAATAA  1098
      |||||||| |||||||||||||| ||| |||||||||||||||||||| |
seq2  TGTTTTCGTTTTGTATCGTTTCGGTTCTTCGTTGCTTGGAGAAAGAAT-A  1098

seq1  TCAAGCAGCAGGTA-TTCT-CAC-TAAG-TGC-TAATCAGTTTAGAAGCC  1143
      || ||||||| ||| |||| ||| |||| ||| || ||||||||||||||
seq2  TC-AGCAGCAAGTATTTCTCCACTTAAGTTGCTTATTCAGTTTAGAAGCC  1147

seq1  CAAACTAAGCATG-TCTGTCC-TAGCAAGCACTA-CACGGCTCATCACAG  1190
      | ||||||||||| ||||||| |||| ||  ||| ||||||||||  |||
seq2  C-AACTAAGCATGTTCTGTCCTTAGC-AGACCTATCACGGCTCATATCAG  1195

seq1  GGTAGA  1196
      ||||||
seq2  GGTAGA  1201

seq1: chr2_76192057_76193043
seq2: B6Ng01-166D05.g_67_1043 (reverse)

seq1  GCTGATCAAAAAGATCAGATATGCTTCTTATTAAACACAATATTTGAAAC  50
      |||||||  ||||||||||||||| |||   ||||||| ||| |||||||
seq2  GCTGATC--AAAGATCAGATATGC-TCT--ATAAACAC-ATA-TTGAAAC  43

seq1  TGGTAGCGAATATTTTGAAGCTGAAATACTACTTCACTTCATGAGGATGT  100
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TGGTAGCGAATA-TTTGAAGCTGAAATACTAC-TCACTTCATGAGGATGT  91

seq1  GGCCTGTTTTAAATACTTAATGAGATCTTCTCTCTCACTCTTCTTTTTGA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTG-TTTAAATACTTAATGAGATCTTCTCTCTCACTCTTCTTTTTGA  140

seq1  TACCAGCAAAGATCATTTTAGTGCCAGGGATATATTTCTTCGGGTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAAAGATCATTTTAGTGCCAGGGATATATTTCTTCGGGTTCTCC  190

seq1  AAATATTCCATCAAAGTTTCTTCTGACCAGATAACACCTACAAAGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCATCAAAGTTTCTTCTGACCAGATAACACCTACAAAGTTGAA  240

seq1  AGTAAGTCTTAAGTCTTTGGAATAACATTCACAGAGCTTACTGTTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCTTAAGTCTTTGGAATAACATTCACAGAGCTTACTGTTTGATA  290

seq1  GGACCCACATACGTGAACCAAGGGTGACAGGGGAAGGAGGAGCAGCCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACATACGTGAACCAAGGGTGACAGGGGAAGGAGGAGCAGCCGCC  340

seq1  TACTGCATGCAGGTGCTGCACCATGCTTCCTTTTAAAAAAGTTTTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATGCAGGTGCTGCACCATGCTTCCTTTTAAAAAAGTTTTGAAGG  390

seq1  CTACGCATGGTGGTGCAAGTCTTTAATCCCAGCACTTGAGAGGCAGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCATGGTGGTGCAAGTCTTTAATCCCAGCACTTGAGAGGCAGTGGC  440

seq1  AAGTAGACCTCTGTGAGTTCAAGGCCAGCCTGGTCTACATATGAGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACCTCTGTGAGTTCAAGGCCAGCCTGGTCTACATATGAGCTCTA  490

seq1  GGTCAGTCATGGATATTTTTCAAAAAAGAAAGAAAGAAAGAAAGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCATGGATATTTTTCAAAAAAGAAAGAAAGAAAGAAAGAAAGAA  540

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAA  590

seq1  AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  640

seq1  AACAAACAAACAAAAACCCAGGAATTTAAAACAAGTTTGAAACCAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAACCCAGGAATTTAAAACAAGTTTGAAACCAGGGAG  690

seq1  AGGTGGTGACTGTACAGCTTTGTACAGCATCCTGAATGCTATAATGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGACTGTACAGCTTTGTACAGCATCCTGAATGCTATAATGTTAA  740

seq1  TAAATTACATATTGTGAAAGAGTTAGTTAGCTAGATGTCATATGAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACATATTGTGAAAGAGTTAGTTAGCTAGATGTCATATGAGTTTT  790

seq1  ACTTCAATTCAAAAAAAAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTCAAAAAAAAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAA  840

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAATGTAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAATGTAAAAC  890

seq1  AGCTGGCCATGGAGTCCATACCTATAGTCCCAGCACTTGCAAGAGGATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCATGGAGTCCATACCTATAGTCCCAGCACTTGCAAGAGGATCA  940

seq1  TAGTGAATCTGAGGCCAAATGGTTTGCAAGTGAATTC  987
      |||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATCTGAGGCCAAATGGTTTGCAAGTGAATTC  977