BAC Information

Click to search

BAC

Clone NameB6Ng01-166F23
Chromosome2 (Build37)
Map Location 143,981,696 - 144,104,712
singlet/doubletdoublet
Overlap geneEG433481, Snx5, 8430406I07Rik
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
Downstream geneOvol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F23.bB6Ng01-166F23.g
ACCDH958173DH958174
length1,1901,054
definitionDH958173|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F23, 5' end.DH958174|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,981,696 - 143,982,746)(144,103,653 - 144,104,712)
sequence
gaattcaacttagtgctattttcacatcgttcagtcaaacttagccagag
ttccaacgccctacttaaaattcaactagaaagttacctaccaagtacta
attagcattataaagtcagagtctgcagctccaggcctttcagttgttta
ctagaaaggacagtcttaagccagatacagtttaccataagaaaggttaa
agaatcccagtgaagcaagttttttctttagccctagattccaggcagaa
ctattgagcatagataattttcccccctcaggccagctttttcctttttt
ttattttgttaataatagggaggagatgtagtctcccctcccccagcctg
aaacctgcttgctcggggtggagcttcctgctcattcgttctgccacgcc
cactgctggaacctgcggagccacacccgtgcacctttctactggaccag
agattattcggcgggaatcgggtcccctcccccttccttcataactggtg
tcgcaacaataaaatttgagctttgatcagtatgaaattgccttagctcc
gtttcttcttttgccccgtctagattcctctcttacagctcgagcggcct
tctcagtcgaaccgttcacgttgcgagctgctggcggccgcaacatgaaa
gtatgaatttggttttgttttttgtttttttaatgaaagcaaaggaaatg
acatttgtcaaaggaaaaagaaaacatgaaagttttttttaaaaaaactt
aaaaaaataaaaatactcccatacatgcatacaatggccttctcagactt
ttcttcccatatactaccaccagcaccaccagcaccacccaacaccagca
ccaccacattcacccagcaccaacatcagcatccaataccagcaccacca
ccagcacccaaccaccagcaccagcaccagcatcatgcctagggtttgct
atctggccttgtttctcagttcgaggaaacagtgagagtttgaagatgca
gagctgtgtagacgtgactcttcccattggcctttgaagcccattgtgtg
cagcccctgttctgcaaaggcaagccttgttcctcgttaaagctatctct
cctgactcaatcgagatggcagaagtcactggggtctgtgtcttctgtgg
cctgagcagctctaaattgtccagccttgctggctctagg
gaattctttgtaagtagcagttcaaactgaaaactcaggccaccaagatg
gctcaatgggtaaaggcgccctgctggcaagcccacagacccaagcacag
tgcctgggactcaaacggtaggagagcaaactcccgaggttgtgctccaa
tctcgacttgcaaactgtggtgtgagaacctacacatatgtacatgtaca
cacacaaacacacacacacacacacacacacacacacacacacacactca
cacactccaaataaacacataaacaaacaaacaaggggctggtgagatgg
ctcagtgggtaagagcacccgactgctcttctgaaggtccggagttcaaa
tcccagcaaccacatggtggctcacaaccatccgtaacgagatctgattc
cttcttctggagtgtctgaagacagctacagtgtacttacatataaccta
taaataaatctaaaaaaaacaaaacaaacaaacaaataaataaataggta
gattatgcatgtatgtaatttaaaatcctataaaacagaaaaactactaa
gttaattcctgtgttaagttctttggttttggttcctcgaagactgttgc
ttttatcctctactttccaaagcaggctttacttcttaggattagaaaag
catgacaggcgtggtcttcatgcctataattctaacagctatgatgttga
ggcaggagaataaccatgagctcaaagccagcctgtgctacagagtgact
tcttgccttcagagaaaagccaggatagatgggactgggcatggctcagc
aacagagaatcctattacacaggaagctattcaggagagtaggaagcaca
tttttggttaaaataataattctctttattccttgtgactcctttaacac
taacagcaactgatattacacctcaaatgtttttggttaattttttggaa
gcagaatgtatcagtagtaagactcattatagattgatacatgttatggg
cacttcacataaagctgagttcaatcagtaagacctgttgatatgcaaca
taga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143981696_143982746
seq2: B6Ng01-166F23.b_192_1234

seq1  TTACTAGAAAGGACAGTCTTAAGCCAGATACAGTTTACCATAAGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAAGGACAGTCTTAAGCCAGATACAGTTTACCATAAGAAAGGT  50

seq1  TAAAGAATCCCAGTGAAGCAAGTTTTTTCTTTAGCCCTAGATTCCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCCCAGTGAAGCAAGTTTTTTCTTTAGCCCTAGATTCCAGGCA  100

seq1  GAACTATTGAGCATAGATAATTTTCCCCCCTCAGGCCAGCTTTTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTGAGCATAGATAATTTTCCCCCCTCAGGCCAGCTTTTTCCTTT  150

seq1  TTTTTATTTTGTTAATAATAGGGAGGAGATGTAGTCTCCCCTCCCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTGTTAATAATAGGGAGGAGATGTAGTCTCCCCTCCCCCAGC  200

seq1  CTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCAC  250

seq1  GCCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGAC  300

seq1  CAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTG  350

seq1  GTGTCGCAACAATAAAATTTGAGCTTTGATCAGTATGAAATTGCCTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGCAACAATAAAATTTGAGCTTTGATCAGTATGAAATTGCCTTAGC  400

seq1  TCCGTTTCTTCTTTTGCCCCGTCTAGATTCCTCTCTTACAGCTCGAGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTCTTCTTTTGCCCCGTCTAGATTCCTCTCTTACAGCTCGAGCGG  450

seq1  CCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGGCCGCAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGGCCGCAACATG  500

seq1  AAAGTATGAATTTGGTTTTGTTTTTTGTTTTTTTAATGAAAGCAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGAATTTGGTTTTGTTTTTTGTTTTTTTAATGAAAGCAAAGGAA  550

seq1  ATGACATTTGTCAAAGGAAAAAGAAAACATGAAAGTTTTTTTTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTGTCAAAGGAAAAAGAAAACATGAAAGTTTTTTTTAAAAAAA  600

seq1  CTTAAAAAAATAAAAATACTCCCATACATGCATACAATGGCCTTCTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAATAAAAATACTCCCATACATGCATACAATGGCCTTCTCAGA  650

seq1  CTTTTCTTCCCATATACTACCACCAGCACCACCAGCACCACCCAACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCCCATATACTACCACCAGCACCACCAGCACCACCCAACACCA  700

seq1  GCACCACCACATTCACCCAGCACCAACATCAGCATCCAATACCAGCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACATTCACCCAGCACCAACATCAGCATCCAATACCAGCACCA  750

seq1  CCACCAGCACCCAACCACCAGCACCAGCACCAGCATCATGCCTAGGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCACCCAACCACCAGCACCAGCACCAGCATCATGCCTAGGGTTT  800

seq1  GCTATCTGGCCTTGTTTCTCAGTTCGAGGAAACAGTGAGAGTTTGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGGCCTTGTTTCTCAGTTCGAGGAAACAGTGAGAGTTTGAAGAT  850

seq1  GCAGAGCTGTGTAGACGTGACTCTTCCCATTGGCCTTTG-AGCCCAATGT  899
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GCAGAGCTGTGTAGACGTGACTCTTCCCATTGGCCTTTGAAGCCCATTGT  900

seq1  GTGCAGCCCCTG-TCTGCAAAGGC-AGGCTTGTTCCTCGTT-AAGCATAC  946
      |||||||||||| ||||||||||| || ||||||||||||| ||||   |
seq2  GTGCAGCCCCTGTTCTGCAAAGGCAAGCCTTGTTCCTCGTTAAAGCTATC  950

seq1  TCTCCTGACCCAATCGAGATGGCAGAAGTCACTGGGGTCTGTGCCTTCTG  996
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCCTGACTCAATCGAGATGGCAGAAGTCACTGGGGTCTGTGTCTTCTG  1000

seq1  TGGCCTGAGCCAGCTCTAGATTGTCCCAGCCTTGCTGGGCCTCAGGCTCT  1046
      ||||||||| |||||||| ||||| |||||||||||||          ||
seq2  TGGCCTGAG-CAGCTCTAAATTGT-CCAGCCTTGCTGG----------CT  1038

seq1  CTAGG  1051
      |||||
seq2  CTAGG  1043

seq1: chr2_144103653_144104712
seq2: B6Ng01-166F23.g_67_1120 (reverse)

seq1  TCTATGTTTGCATATC-ACAGGTTCCTACTGATTGAACTCAGCTTTTATG  49
      |||||| ||||||||| ||||| || ||||||||||||||||| ||||| 
seq2  TCTATG-TTGCATATCAACAGG-TCTTACTGATTGAACTCAGC-TTTAT-  46

seq1  GTGAAGTG-CCATAACATGTATCAATCTATAATGAGTTCTTTACTACTGA  98
      |||||||| ||||||||||||||||||||||||||||   ||||||||||
seq2  GTGAAGTGCCCATAACATGTATCAATCTATAATGAGT--CTTACTACTGA  94

seq1  TACATTCTGCTTCCAAAAAATTAACCAAAAACATGTGAGGTGTAATATCA  148
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACATTCTGCTTCCAAAAAATTAACCAAAAACATTTGAGGTGTAATATCA  144

seq1  GTTGCTGTTAGTGGTTAAAGGAGTCACAAGGAATAAAGAGAATTATTATT  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTAGT-GTTAAAGGAGTCACAAGGAATAAAGAGAATTATTATT  193

seq1  TTAACCAAAAATGTGCTTCCTACTCCTCCTGAATAGCTTCCTGTGTAATA  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAACCAAAAATGTGCTTCCTACT-CTCCTGAATAGCTTCCTGTGTAATA  242

seq1  GGATTCTCTGTTGCTGAGCCATGCCCAGTCCCATCTATCCTGGCTTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCTGTTGCTGAGCCATGCCCAGTCCCATCTATCCTGGCTTTTCT  292

seq1  CTGAAGGCAAGAAGTCACTCTGTAGCACAGGCTGGCTTTGAGCTCATGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCAAGAAGTCACTCTGTAGCACAGGCTGGCTTTGAGCTCATGGT  342

seq1  TATTCTCCTGCCTCAACATCATAGCTGTTAGAATTATAGGCATGAAGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCTGCCTCAACATCATAGCTGTTAGAATTATAGGCATGAAGACC  392

seq1  ACGCCTGTCATGCTTTTCTAATCCTAAGAAGTAAAGCCTGCTTTGGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGTCATGCTTTTCTAATCCTAAGAAGTAAAGCCTGCTTTGGAAAG  442

seq1  TAGAGGATAAAAGCAACAGTCTTCGAGGAACCAAAACCAAAGAACTTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATAAAAGCAACAGTCTTCGAGGAACCAAAACCAAAGAACTTAAC  492

seq1  ACAGGAATTAACTTAGTAGTTTTTCTGTTTTATAGGATTTTAAATTACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTAACTTAGTAGTTTTTCTGTTTTATAGGATTTTAAATTACAT  542

seq1  ACATGCATAATCTACCTATTTATTTATTTGTTTGTTTGTTTTGTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATAATCTACCTATTTATTTATTTGTTTGTTTGTTTTGTTTTTTT  592

seq1  TAGATTTATTTATAGGTTATATGTAAGTACACTGTAGCTGTCTTCAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTATTTATAGGTTATATGTAAGTACACTGTAGCTGTCTTCAGACA  642

seq1  CTCCAGAAGAAGGAATCAGATCTCGTTACGGATGGTTGTGAGCCACCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGAAGGAATCAGATCTCGTTACGGATGGTTGTGAGCCACCATG  692

seq1  TGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCGGGTGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGATTTGAACTCCGGACCTTCAGAAGAGCAGTCGGGTGCTC  742

seq1  TTACCCACTGAGCCATCTCACCAGCCCCTTGTTTGTTTGTTTATGTGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGAGCCATCTCACCAGCCCCTTGTTTGTTTGTTTATGTGTTT  792

seq1  ATTTGGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  842

seq1  TGTGTTTGTGTGTGTACATGTACATATGTGTAGGTTCTCACACCACAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTGTGTACATGTACATATGTGTAGGTTCTCACACCACAGTT  892

seq1  TGCAAGTCGAGATTGGAGCACAACCTCGGGAGTTTGCTCTCCTACCGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCGAGATTGGAGCACAACCTCGGGAGTTTGCTCTCCTACCGTTT  942

seq1  GAGTCCCAGGCACTGTGCTTGGGTCTGTGGGCTTGCCAGCAGGGCGCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAGGCACTGTGCTTGGGTCTGTGGGCTTGCCAGCAGGGCGCCTT  992

seq1  TACCCATTGAGCCATCTTGGTGGCCTGAGTTTTCAGTTTGAACTGCTACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTGAGCCATCTTGGTGGCCTGAGTTTTCAGTTTGAACTGCTACT  1042

seq1  TACAAAGAATTC  1060
      ||||||||||||
seq2  TACAAAGAATTC  1054