BAC Information

Click to search

BAC

Clone NameB6Ng01-166G19
Chromosome2 (Build37)
Map Location 54,187,729 - 54,283,753
singlet/doubletdoublet
Overlap geneLOC100041792
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563
Downstream geneLOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166G19.bB6Ng01-166G19.g
ACCDH958211DH958212
length1,169975
definitionDH958211|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G19, 5' end.DH958212|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,187,729 - 54,188,898)(54,282,776 - 54,283,753)
sequence
gaattccaatcaatagaaagatagtcccactagttcaatagtttcacaat
tggtttgggggtgaccattattttctgattgaatttcaggcccaattcca
tgagaagaaacacataccttgacctgtaaaccttccaaaaaacttatagt
tgaatatattacaagccctagggggtgggggtaacttacaattgatatta
agttagatggatatataacagaaatgccttccagatatgtttgttatctt
agatttagctagagcagcttcctttacagcaagtgatagttgatacagag
atccataactggtcacaatgctgaggataaatgaccattgagtgctcatc
cctaaacaggacatttatattactgtttccaaaatcattgtgaaaaagga
acagagattgtaagagctgaagggtagggaggggtcctgtgaaactcaga
ccataaaagtagtacaagatttagttggaaagcaaaattctgaaggactt
agatggtaaaatgaaagagtaacagggatgaatttctgattgaatttcag
gcccaactccatggaaagaaatgcatacctgatcctgtaaacctgcccca
aaaccttatggttgaatatatcacaagcatggggtgggagaaacttaatg
gtgatatcaagttagatgaattcacagtacattgtgtaggtatatgatat
tatcaaaaattaattttaaaaagaggaaactctcaaatctcaagaaattg
catccagcacacaaggtattccaaaaacatttatctaatttcccttaacc
catctaaattttaatccttaaacatttaggttcaatgtgtattcaaactc
gatttatttataaaatgtgatttttgtatattattatggctgcttagctt
taagatgtttctgtcaaaacatgttaacgttttctaagatataatcaaaa
taagatgcccaaatctgcatttctcacttagttttgtcatagaagtatga
aataatagacaagcatctagcctggaggtgaaggttcttgattagtggtt
agaacaaaattgaatctggaatatctttctgtcattcttctggcatgctt
ccatgaaaaataccctcgtaagtaagtttggaaagctttttgtacaaaat
atccaatatagaagtgaaa
gaattcttgtttggacaataatcagttaggtcaaagaaatatggcaacaa
gaagttaccaactatgattattcaggaccatggagagcgacaaaatgcct
gccttccaaagttgtggatgctgcaatcaatgctgtcactctgcatacag
aagacaaacacagaaaagtaagaacaggacaaaacaaaacaaaacaaaaa
aagagtaaggaagatagactatacaaggatttagcatttaaagaccagag
tatatagatagaaaacaggtccacatgaaaaatcgcaaacacaaaggaag
tatttcactacaattaaacttgccatatttatgttagtccaagaggaaat
gcgtattaaaatgtttagtgccatttatgtttaaagcaagaatccttttt
gttgtttatttgatttgttggttgtttttgttgttgttgttttgtgttgg
tttgtttattttgaaacagggtctctctatgtggtcctggttgcactgga
acacactatgtaaaacaggttgacctggaactcagagatactcctgcctc
tggctcacaagtgtgaggattaaagttgtgcaccaccacactggatttcc
aaatcaacaatatttacatctttaaaataagccctgcaaatcagggatta
catcttaggttcccagactaaaaactatctgacacatagtaggttttcat
atatacactaaaatataatatataaatcaatgtgcactaattattaccat
tctgccacggattacatacttttcttattcaaggttatgaataatcaaac
tacaacactagctaagatgtatttatgcttaaagaatatatagctcacag
aaaataaaaaaattaaaataaacaaattattctatatctttgtatggagg
ctatgcctttcatcctagcagcaggggttaaagcagcgatctctgaagtc
aggcaccactggactgcagaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54187729_54188898
seq2: B6Ng01-166G19.b_45_1213

seq1  GAATTCCAATCAATAGAAAGATAGTCCCACTAGTTCAATAGTTTCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCAATAGAAAGATAGTCCCACTAGTTCAATAGTTTCACAAT  50

seq1  TGGTTTGGGGGTGACCATTATTTTCTGATTGAATTTCAGGCCCAATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGGGGTGACCATTATTTTCTGATTGAATTTCAGGCCCAATTCCA  100

seq1  TGAGAAGAAACACATACCTTGACCTGTAAACCTTCCAAAAAACTTATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAACACATACCTTGACCTGTAAACCTTCCAAAAAACTTATAGT  150

seq1  TGAATATATTACAAGCCCTAGGGGGTGGGGGTAACTTACAATTGATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATTACAAGCCCTAGGGGGTGGGGGTAACTTACAATTGATATTA  200

seq1  AGTTAGATGGATATATAACAGAAATGCCTTCCAGATATGTTTGTTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATGGATATATAACAGAAATGCCTTCCAGATATGTTTGTTATCTT  250

seq1  AGATTTAGCTAGAGCAGCTTCCTTTACAGCAAGTGATAGTTGATACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGCTAGAGCAGCTTCCTTTACAGCAAGTGATAGTTGATACAGAG  300

seq1  ATCCATAACTGGTCACAATGCTGAGGATAAATGACCATTGAGTGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAACTGGTCACAATGCTGAGGATAAATGACCATTGAGTGCTCATC  350

seq1  CCTAAACAGGACATTTATATTACTGTTTCCAAAATCATTGTGAAAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGGACATTTATATTACTGTTTCCAAAATCATTGTGAAAAAGGA  400

seq1  ACAGAGATTGTAAGAGCTGAAGGGTAGGGAGGGGTCCTGTGAAACTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTGTAAGAGCTGAAGGGTAGGGAGGGGTCCTGTGAAACTCAGA  450

seq1  CCATAAAAGTAGTACAAGATTTAGTTGGAAAGCAAAATTCTGAAGGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGTAGTACAAGATTTAGTTGGAAAGCAAAATTCTGAAGGACTT  500

seq1  AGATGGTAAAATGAAAGAGTAACAGGGATGAATTTCTGATTGAATTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTAAAATGAAAGAGTAACAGGGATGAATTTCTGATTGAATTTCAG  550

seq1  GCCCAACTCCATGGAAAGAAATGCATACCTGATCCTGTAAACCTGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACTCCATGGAAAGAAATGCATACCTGATCCTGTAAACCTGCCCCA  600

seq1  AAACCTTATGGTTGAATATATCACAAGCATGGGGTGGGAGAAACTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTATGGTTGAATATATCACAAGCATGGGGTGGGAGAAACTTAATG  650

seq1  GTGATATCAAGTTAGATGAATTCACAGTACATTGTGTAGGTATATGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCAAGTTAGATGAATTCACAGTACATTGTGTAGGTATATGATAT  700

seq1  TATCAAAAATTAATTTTAAAAAGAGGAAACTCTCAAATCTCAAGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAATTAATTTTAAAAAGAGGAAACTCTCAAATCTCAAGAAATTG  750

seq1  CATCCAGCACACAAGGTATTCCAAAAACATTTATCTAATTTCCCTTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCACACAAGGTATTCCAAAAACATTTATCTAATTTCCCTTAACC  800

seq1  CATCTAAATTTTAATCCTTAAACATTTAGGTTCAATGTGTATTCAAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAATTTTAATCCTTAAACATTTAGGTTCAATGTGTATTCAAACTC  850

seq1  GATTTATTTATAAAATGTGATTTTTGTATATTATTATGGCTGCTTAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTATAAAATGTGATTTTTGTATATTATTATGGCTGCTTAGCTT  900

seq1  TAAGATGTTTCTGTCAAAACATGTTAACGTTTTCTAAGATATAATCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTTTCTGTCAAAACATGTTAACGTTTTCTAAGATATAATCAAAA  950

seq1  T-AGATGCCCAAATCTGCATTTCTCACTTAGTTTTGTCATAGAAGTATGA  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGCCCAAATCTGCATTTCTCACTTAGTTTTGTCATAGAAGTATGA  1000

seq1  AATAATAGACAAGCATCTAGCCT-GAAGTGATGGTTCTTGATTAGTGGTT  1048
      ||||||||||||||||||||||| || |||| ||||||||||||||||||
seq2  AATAATAGACAAGCATCTAGCCTGGAGGTGAAGGTTCTTGATTAGTGGTT  1050

seq1  AG-ACCATATTGATTCTGGAAATATCTTTCTGTCATTC-TCTGCCATGCT  1096
      || || | ||||| ||||| |||||||||||||||||| |||| ||||||
seq2  AGAACAAAATTGAATCTGG-AATATCTTTCTGTCATTCTTCTGGCATGCT  1099

seq1  TCCAATGAAAAATACCCT-GTAAGTAAGTTTAGAAAAGCATATTAGTACA  1145
      ||| |||||||||||||| |||||||||||| | ||||| | || |||| 
seq2  TCC-ATGAAAAATACCCTCGTAAGTAAGTTT-GGAAAGC-TTTTTGTAC-  1145

seq1  AAAATATCCAATATAAGAAGTGAAA  1170
      |||||||||||||| ||||||||||
seq2  AAAATATCCAATAT-AGAAGTGAAA  1169

seq1: chr2_54282776_54283753
seq2: B6Ng01-166G19.g_66_1040 (reverse)

seq1  TCAC-TCTGCAGTCCAGTGTTGCCTTGACCTCAGAGATCTGCCTGCCTTT  49
      |||| |||||||||||||| |||| |||| |||||||||   ||| ||||
seq2  TCACTTCTGCAGTCCAGTGGTGCC-TGACTTCAGAGATC--GCTG-CTTT  46

seq1  AACCCCTGCCTGCTAGGATGAAAGGCATATGCCACCATACAAAGATATAG  99
      |||||||| |||||||||||||||||||| ||| ||||||||||||||||
seq2  AACCCCTG-CTGCTAGGATGAAAGGCATA-GCCTCCATACAAAGATATAG  94

seq1  ATTATTTTGTTTTATTTTATTTTTTTATTTTTCTGTGAGCTATATATTC-  148
      | || |||| ||||||||| ||||||  ||||||||||||||||||||| 
seq2  AATAATTTG-TTTATTTTAATTTTTTTATTTTCTGTGAGCTATATATTCT  143

seq1  TTAAGCATAAATACATCTTAGCTAGTGTTGTAGTTTGATTATTCATAACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATAAATACATCTTAGCTAGTGTTGTAGTTTGATTATTCATAACC  193

seq1  TTGAATAAG-AAAGTATGTAATCCGTGGCAGAATGGTAATAATTAGTGCA  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGAAAAGTATGTAATCCGTGGCAGAATGGTAATAATTAGTGCA  243

seq1  CATTGATTTATATATTATA-TTTAGTGTATATATGAAAACCTACTATGTG  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTGATTTATATATTATATTTTAGTGTATATATGAAAACCTACTATGTG  293

seq1  TCAGATAGTTTTTAGTCTGGGAACCTAAGATGTAATCCCTGATTTGCAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGTTTTTAGTCTGGGAACCTAAGATGTAATCCCTGATTTGCAGG  343

seq1  GCTTATTTTAAAGATGTAAATATTGTTGATTTGGAAATCCAGTGTGGTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTAAAGATGTAAATATTGTTGATTTGGAAATCCAGTGTGGTGG  393

seq1  TGCACAACTTTAATCCTCACACTTGTGAGCCAGAGGCAGGAGTATCTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTTTAATCCTCACACTTGTGAGCCAGAGGCAGGAGTATCTCTG  443

seq1  AGTTCCAGGTCAACCTGTTTTACATAGTGTGTTCCAGTGCAACCAGGACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGTCAACCTGTTTTACATAGTGTGTTCCAGTGCAACCAGGACC  493

seq1  ACATAGAGAGACCCTGTTTCAAAATAAACAAACAAACACAAAACAACAAC  546
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACATAGAGAGACCCTGTTTCAAAATAAACAAACCAACACAAAACAACAAC  543

seq1  AACAAAAACAACCAACAAATCAAATAAACAACAAAAAGGATTCTTGCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAACCAACAAATCAAATAAACAACAAAAAGGATTCTTGCTTT  593

seq1  AAACATAAATGGCACTAAACATTTTAATACGCATTTCCTCTTGGACTAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATGGCACTAAACATTTTAATACGCATTTCCTCTTGGACTAAC  643

seq1  ATAAATATGGCAAGTTTAATTGTAGTGAAATACTTCCTTTGTGTTTGCGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGGCAAGTTTAATTGTAGTGAAATACTTCCTTTGTGTTTGCGA  693

seq1  TTTTTCATGTGGACCTGTTTTCTATCTATATACTCTGGTCTTTAAATGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTGGACCTGTTTTCTATCTATATACTCTGGTCTTTAAATGCT  743

seq1  AAATCCTTGTATAGTCTATCTTCCTTACTCTTTTTTTGTTTTGTTTTGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTGTATAGTCTATCTTCCTTACTCTTTTTTTGTTTTGTTTTGTT  793

seq1  TTGTCCTGTTCTTACTTTTCTGTGTTTGTCTTCTGTATGCAGAGTGACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGTTCTTACTTTTCTGTGTTTGTCTTCTGTATGCAGAGTGACAG  843

seq1  CATTGATTGCAGCATCCACAACTTTGGAAGGCAGGCATTTTGTCGCTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTGCAGCATCCACAACTTTGGAAGGCAGGCATTTTGTCGCTCTC  893

seq1  CATGGTCCTGAATAATCATAGTTGGTAACTTCTTGTTGCCATATTTCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCTGAATAATCATAGTTGGTAACTTCTTGTTGCCATATTTCTTT  943

seq1  GACCTAACTGATTATTGTCCAAACAAGAATTC  978
      ||||||||||||||||||||||||||||||||
seq2  GACCTAACTGATTATTGTCCAAACAAGAATTC  975