BAC Information

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BAC

Clone NameB6Ng01-166I14
Chromosome2 (Build37)
Map Location 10,538,675 - 10,723,347
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I14.bB6Ng01-166I14.g
ACCDH958290DH958291
length1,0901,117
definitionDH958290|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I14, 5' end.DH958291|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,538,675 - 10,539,771)(10,722,225 - 10,723,347)
sequence
gaattcaacagcatggggcctgaaagtaggattcagaaaccatccatgac
catgcttaagggaatgtgaatgctgcgctgacgtgcacaaatgtatggaa
atgtaagactctatttttcagccaccacatccaatacgttggacaatcac
cagcatttggatgccaagaactctatagaaaggagaaactgaggcacagg
taatttgtctggcttgccttatttattgggactctatggttctgactcag
cctctggcaatatttggtgtattccccctagttacacagtatctctgtgc
cgttatccaaagtgcacccactggttttctccttgacttgacagttcagc
aaaaggcaatgttacctctcctgggggaggggttcacagttttccatagg
cagccacagactccttttgggcttttttgtttttccttattccctttgtc
ataaattcagctgtcttccaaaatgcgcagtgaatttcagaggtcatgct
ttctaccttttgatgtctacatcttataaccaagcacacagtaggtgttc
aacaaatattgactgtcagtttgtggggggaatctataataaaatgccac
ctgccagatgggttttaatcaacaggcatctattgcttacagctgaaagg
tgggaccaacagattcagtgtctggtggataattgcttcctagttcatag
atggtgtgctttcatgctgtgttgtcaattggcagaaggtgagagagagc
actggggactgtttataaggtgtcaatcccaccttaccatacccatcagt
cactctgtatctgtcttccatcctagtccggtcactccggggttaggttg
taatagataagtttaggaagagcatgaacatttagaccattgaagacagc
agaatctcatcgcaacctttttttcctttctactctgttttccttttaca
ctaatttgaatagcaactttcttatgcacatgtcagtattctggtactat
ggataaatactggttaaaacttctaagtgattttaaagaagaatatagta
gagtgggtaggtggtgaccggcaaactgtttcctctcaga
gaattctacaggggacatgattttgtcttgaagagctgtgaactagatgt
taagtcaggtaaagctaactgttgtggtttggatgtgagtagcccccgta
ggatcctatatttgaatgcttggttcccagttgtggaactgttttggaag
gattaggaggtgtatccttttcagaggaggtgtgtcactggggacaggtt
tggatgtttgaaaagcccatggcattcccaggtagttctcgtccttgtgc
ttgcggatggtggcatgagctcccagctacggctccagtgacatccctgc
ctacctgctgccatgctcctcaccatgatggtcaagactcttaactctct
ggctctgtgagccccaacttaaattatttctaagttgccttgctcatagt
atttgcttgcttgtttgttttcttcgcaccaattcaaaagcaactaagac
actaacagagaaatcaattccttttttgttatgtatttttagtagtggtc
aaaagtcaacctcaggtatgattttcttcaacccaggggaagaaagaccc
tcaattggagatatcaaaggaatgtataaactcttggtgctcccctgagg
aagattcatgctctgagaggctaaactgcaagttgaaaaattcaacctgg
gcttttgctgatttcttctctctattaaatttgcacagtgaaatcattgt
tacttaagcaaactagctgcttttaaactctaagaaaatataatgcactc
tctgtttattacagaaattcccagctgtgtggaagtaagttctaagggaa
acagagttttagccttatagatatctattaatagtccagtgggatggtat
ttacctggggttcttgatgttgttatcttttaaataaaagaatgcatggc
ttcagatgagagcattatatgatagataaaattggataaattattcaaca
gtatggttccttgaataaagtatatccaagatactcatctacagaaaaaa
taatggtctgagaggatcactcagtgggcaagtgcttgctttacagtaca
ggaacgaagtttaaagtcccagcactgtataaagctgatagtatgtcatg
agtctgtaagcctatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_10538675_10539771
seq2: B6Ng01-166I14.b_42_1131

seq1  GAATTCAACAGCATGGGGCCTGAAAGTAGGATTCAGAAACCATCCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCATGGGGCCTGAAAGTAGGATTCAGAAACCATCCATGAC  50

seq1  CATGCTTAAGGGAATGTGAATGCTGCGCTGACGTGCACAAATGTATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTAAGGGAATGTGAATGCTGCGCTGACGTGCACAAATGTATGGAA  100

seq1  ATGTAAGACTCTATTTTTCAGCCACCACATCCAATACGTTGGACAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGACTCTATTTTTCAGCCACCACATCCAATACGTTGGACAATCAC  150

seq1  CAGCATTTGGATGCCAAGAACTCTATAGAAAGGAGAAACTGAGGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGGATGCCAAGAACTCTATAGAAAGGAGAAACTGAGGCACAGG  200

seq1  TAATTTGTCTGGCTTGCCTTATTTATTGGGACTCTATGGTTCTGACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTCTGGCTTGCCTTATTTATTGGGACTCTATGGTTCTGACTCAG  250

seq1  CCTCTGGCAATATTTGGTGTATTCCCCCTAGTTACACAGTATCTCTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCAATATTTGGTGTATTCCCCCTAGTTACACAGTATCTCTGTGC  300

seq1  CGTTATCCAAAGTGCACCCACTGGTTTTCTCCTTGACTTGACAGTTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATCCAAAGTGCACCCACTGGTTTTCTCCTTGACTTGACAGTTCAGC  350

seq1  AAAAGGCAATGTTACCTCTCCTGGGGGAGGGGTTCACAGTTTTCCATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAATGTTACCTCTCCTGGGGGAGGGGTTCACAGTTTTCCATAGG  400

seq1  CAGCCACAGACTCCTTTTGGGCTTTTTTGTTTTTCCTTATTCCCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGACTCCTTTTGGGCTTTTTTGTTTTTCCTTATTCCCTTTGTC  450

seq1  ATAAATTCAGCTGTCTTCCAAAATGCGCAGTGAATTTCAGAGGTCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAGCTGTCTTCCAAAATGCGCAGTGAATTTCAGAGGTCATGCT  500

seq1  TTCTACCTTTTGATGTCTACATCTTATAACCAAGCACACAGTAGGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTTTGATGTCTACATCTTATAACCAAGCACACAGTAGGTGTTC  550

seq1  AACAAATATTGACTGTCAGTTTGTGGGGGGAATCTATAATAAAATGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATTGACTGTCAGTTTGTGGGGGGAATCTATAATAAAATGCCAC  600

seq1  CTGCCAGATGGGTTTTAATCAACAGGCATCTATTGCTTACAGCTGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGATGGGTTTTAATCAACAGGCATCTATTGCTTACAGCTGAAAGG  650

seq1  TGGGACCAACAGATTCAGTGTCTGGTGGATAATTGCTTCCTAGTTCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAACAGATTCAGTGTCTGGTGGATAATTGCTTCCTAGTTCATAG  700

seq1  ATGGTGTGCTTTCATGCTGTGTTGTCAATTGGCAGAAGGTGAGAGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGCTTTCATGCTGTGTTGTCAATTGGCAGAAGGTGAGAGAGAGC  750

seq1  ACTGGGGACTGTTTATAAGGTGTCAATCCCACCTTACCATACCCATCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGACTGTTTATAAGGTGTCAATCCCACCTTACCATACCCATCAGT  800

seq1  CACTCTGTATCTGTCTTCCATCCTAGTCCGGTCACTCCGGGGTTAGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTATCTGTCTTCCATCCTAGTCCGGTCACTCCGGGGTTAGGTTG  850

seq1  TAATAGATAAGTTTAGGAAGAGCATGAACATTTAGACCATTGAAGACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATAAGTTTAGGAAGAGCATGAACATTTAGACCATTGAAGACAGC  900

seq1  AGAATCTCAATCGCAACCTTTTTTTCCTTTCTACTCTGTTTTCCTTTTAC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTC-ATCGCAACCTTTTTTTCCTTTCTACTCTGTTTTCCTTTTAC  949

seq1  ACTAATTTTGAATAGCAACTTTCTTTATGCACAATGTCAGTATTCTGGTA  1000
      ||||| ||||||||||||||||| |||||||| |||||||||||||||||
seq2  ACTAA-TTTGAATAGCAACTTTC-TTATGCAC-ATGTCAGTATTCTGGTA  996

seq1  CTATGGATAAATACTGGTTAAAAACCTTCTAAGTGATTTTAAAGAAGAAT  1050
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CTATGGATAAATACTGGTTAAAA--CTTCTAAGTGATTTTAAAGAAGAAT  1044

seq1  ATAGT-GGGTGGGTAGGTGGTGACCGGAAAACTGTTTACCTTCTCAGA  1097
      ||||| | ||||||||||||||||||| |||||||||  | |||||||
seq2  ATAGTAGAGTGGGTAGGTGGTGACCGGCAAACTGTTT--CCTCTCAGA  1090

seq1: chr2_10722225_10723347
seq2: B6Ng01-166I14.g_69_1185 (reverse)

seq1  ACATAGGCTTACAGACTCATGCCACTACATCCAGCTTTTATACAAGTGCT  50
      ||||||||||||||||||||| || |||   |||| ||||||| ||||||
seq2  ACATAGGCTTACAGACTCATGACA-TACTATCAGC-TTTATAC-AGTGCT  47

seq1  GGGAATTTAAACTCGGTCCCTGTACTTGTAAAGCAAGCACTTTGCCCACT  100
      |||| ||||||||  || ||||||| |||||||||||||| |||||||||
seq2  GGGACTTTAAACTTCGTTCCTGTAC-TGTAAAGCAAGCAC-TTGCCCACT  95

seq1  GAGTGATCCTCTCAGACCATTTATTTTTCTGTAGATGAAGTATCTTGGAT  150
      |||||||||||||||||||||  |||||||||||||| ||||||||||||
seq2  GAGTGATCCTCTCAGACCATTATTTTTTCTGTAGATG-AGTATCTTGGAT  144

seq1  ATACTTTATTCAAGGAACCATACTGTTGAATAATTTATCCAATTTTTATC  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACTTTATTCAAGGAACCATACTGTTGAATAATTTATCCAA-TTTTATC  193

seq1  TATCATATAATGCTCTCAATCTGAAGCCATGCATTCTTTTATTTAAAAGA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCATATAATGCTCTC-ATCTGAAGCCATGCATTCTTTTATTTAAAAGA  242

seq1  TAACAACATCAAGAACCCCAGGTAAATACCAT-CCACTGGACTATTAATA  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAACAACATCAAGAACCCCAGGTAAATACCATCCCACTGGACTATTAATA  292

seq1  GATATCTATAAGGCTAAAACTCTGTTTCCC-TAGAACTTACTTCCACACA  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATATCTATAAGGCTAAAACTCTGTTTCCCTTAGAACTTACTTCCACACA  342

seq1  GCTGGGAATTTCTGTAATAAACAGAGAGTGCATTATATTTTCTTAGAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATTTCTGTAATAAACAGAGAGTGCATTATATTTTCTTAGAGTT  392

seq1  TAAAAGCAGCTAGTTTGCTTAAGTAACAATGATTTCACTGTGCAAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAGCTAGTTTGCTTAAGTAACAATGATTTCACTGTGCAAATTTA  442

seq1  ATAGAGAGAAGAAATCAGCAAAAGCCCAGGTTGAATTTTTCAACTTGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAAGAAATCAGCAAAAGCCCAGGTTGAATTTTTCAACTTGCAG  492

seq1  TTTAGCCTCTCAGAGCATGAATCTTCCTCAGGGGAGCACCAAGAGTTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCTCAGAGCATGAATCTTCCTCAGGGGAGCACCAAGAGTTTAT  542

seq1  ACATTCCTTTGATATCTCCAATTGAGGGTCTTTCTTCCCCTGGGTTGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTTGATATCTCCAATTGAGGGTCTTTCTTCCCCTGGGTTGAAG  592

seq1  AAAATCATACCTGAGGTTGACTTTTGACCACTACTAAAAATACATAACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATACCTGAGGTTGACTTTTGACCACTACTAAAAATACATAACAA  642

seq1  AAAAGGAATTGATTTCTCTGTTAGTGTCTTAGTTGCTTTTGAATTGGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATTGATTTCTCTGTTAGTGTCTTAGTTGCTTTTGAATTGGTGC  692

seq1  GAAGAAAACAAACAAGCAAGCAAATACTATGAGCAAGGCAACTTAGAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACAAACAAGCAAGCAAATACTATGAGCAAGGCAACTTAGAAAT  742

seq1  AATTTAAGTTGGGGCTCACAGAGCCAGAGAGTTAAGAGTCTTGACCATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTTGGGGCTCACAGAGCCAGAGAGTTAAGAGTCTTGACCATCA  792

seq1  TGGTGAGGAGCATGGCAGCAGGTAGGCAGGGATGTCACTGGAGCCGTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGAGCATGGCAGCAGGTAGGCAGGGATGTCACTGGAGCCGTAGC  842

seq1  TGGGAGCTCATGCCACCATCCGCAAGCACAAGGACGAGAACTACCTGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTCATGCCACCATCCGCAAGCACAAGGACGAGAACTACCTGGGA  892

seq1  ATGCCATGGGCTTTTCAAACATCCAAACCTGTCCCCAGTGACACACCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGGGCTTTTCAAACATCCAAACCTGTCCCCAGTGACACACCTCC  942

seq1  TCTGAAAAGGATACACCTCCTAATCCTTCCAAAACAGTTCCACAACTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGGATACACCTCCTAATCCTTCCAAAACAGTTCCACAACTGGG  992

seq1  AACCAAGCATTCAAATATAGGATCCTACGGGGGCTACTCACATCCAAACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCATTCAAATATAGGATCCTACGGGGGCTACTCACATCCAAACC  1042

seq1  ACAACAGTTAGCTTTACCTGACTTAACATCTAGTTCACAGCTCTTCAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTTAGCTTTACCTGACTTAACATCTAGTTCACAGCTCTTCAAGA  1092

seq1  CAAAATCATGTCCCCTGTAGAATTC  1123
      |||||||||||||||||||||||||
seq2  CAAAATCATGTCCCCTGTAGAATTC  1117