BAC Information

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BAC

Clone NameB6Ng01-166J06
Chromosome2 (Build37)
Map Location 13,569,862 - 13,765,067
singlet/doubletdoublet
Overlap geneSt8sia6
Upstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim
Downstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166J06.bB6Ng01-166J06.g
ACCDH958318DH958319
length1,173709
definitionDH958318|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J06, 5' end.DH958319|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,763,897 - 13,765,067)(13,569,862 - 13,570,570)
sequence
gaattctttcttaaacgttctcaacccacttttcaaaccttacccaggca
tcctgtgttctaattccaaaccatgatctgaataattttctcttctctat
caatcactcagcctcagttactgtcacctggtttctactgtttccaaact
ctcaaagctcacgtagaaatacaagattaagattttcactgctggctgtt
cttgtctatatgacgcgatttcattgtagaaataatgttttgtaattgta
atttcttaagagaacatggcacaggagtcaactagccaccattgtttctg
tggtgtcctaaagagcacagaaacacacgatttcctagcttggtgcttta
gaatcccactccttgttgctagtatgctttgtttatacctcaggatagat
ccaactactgaggtctggcccttctcttttgcctgggtgtccctatcctg
ttccatttccatacaacatctaacaggttcctgaagtatgaagacttgcc
ctaattttctaaggtggcattgaatgcataaaaatccattatttcatctt
tatgtaaattatagcttttagaatcacaaagacttccttatctttaaata
tatatgctgatctgaaattttgcagaggatctgaagcctgcaaagacact
tcccaatttcttcttgtgggcaatgggcaccatccatcatgaagagggta
gacttgggattgggtactgtttatgctgaggttggacctttcccccttga
gactatgtatcatccatgctgacagcaaacactttcttgaggtcttagca
tctttactctccctggcaagaagttttacaagttttgacagtagacttct
cccattccatttgacttatgatgaaggtgaactctgccttggaactggat
accaactatgctgaagatagattctatcagattaggattggataccttcc
atgctgaagatggtcccctctccctccctgggattggcactattcatgca
gaagttgaatttctcccttggggtggtcactatccatgatgagggtgata
cttcttcctaaggatgaatggtcaacctatggacacttcaaccttctagt
tcaacccaatagaatggtcttttcctttccttcaggcttctttcttattt
aagagcacaggcatcttgttctt
gaattcagggccagaatgagctatgtaaaaccctgccttaaaaccaagag
agtataagtatagatgtacctttaaaagcatcctaaagagcatgtcagaa
tggcataagaaaaagcccaaagactttagttttaaatgaggcagtaaagg
ctgagattggtgtctttgccaagcagaccacgacaggagccagctgtccc
acctttgaatatgaatcgcaaggtcagcagcaaactccagggctgcacac
tcttccatgctaactgctactctggtcacaacaagcagaatacagagcaa
gcttagcgtccatcagcaatgaatggataaagagaaagtaatacatacac
ataaaggaatcttaggaagccataagccaacacaaaggaatggagttttg
cagaaaaaaaaagtgtgaagctcgaaatcacgattttaaacagataagcc
tggctcagaaaggcaaataccatgttttctctcatatgcagaatttatac
ttaaatttatagagaggtgtatatataaatgtgtttacatatgtgtgtaa
gtgtaggttgtggacagagaaagggaatcaatggtgatgaggagactgta
aagttgagggttgtagaatgtatgtgacatgaaaacttagtggtggatcg
aggatggcagagaaccagccagccgagggcatggagtaggatagtgaagt
ggggagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13763897_13765067
seq2: B6Ng01-166J06.b_44_1216 (reverse)

seq1  AAGAACAAGATGCCTGTGCTCTTAAGTAAGAAGAAAGGCTG-AGGAAAGG  49
      ||||||||||||||||||||||||| ||||||  ||| ||| ||||||||
seq2  AAGAACAAGATGCCTGTGCTCTTAAATAAGAAAGAAGCCTGAAGGAAAGG  50

seq1  AAAAGGACA-TCTAATGGG-TGGACTAGAA-GTTGAAGTGTCAATAGG-T  95
      |||||  || |||| |||| || ||||||| ||||||||||| ||||| |
seq2  AAAAGACCATTCTATTGGGTTGAACTAGAAGGTTGAAGTGTCCATAGGTT  100

seq1  GACCA-TCATCCCTAAGGAGAAGTATCCACCCTCATCATGGATAGTGACC  144
      ||||| |||||| || | |||||||| |||||||||||||||||||||||
seq2  GACCATTCATCCTTAGGAAGAAGTAT-CACCCTCATCATGGATAGTGACC  149

seq1  AACCCCAAGGGAGAAAATTCAACCTTCTGCATGAATAGTGCCAATCCCAG  194
       |||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  -ACCCCAAGGGAG-AAATTCAA-CTTCTGCATGAATAGTGCCAATCCCAG  196

seq1  GGAGGGAGAGGGGACCATCTTCAGCATGGAAGGTATCCAATCCTAATCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAGGGGACCATCTTCAGCATGGAAGGTATCCAATCCTAATCTG  246

seq1  ATAGAATCTATCTTCAGCATAGTTGGTATCCAGTTCCAAGGCAGAGTTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCTATCTTCAGCATAGTTGGTATCCAGTTCCAAGGCAGAGTTCA  296

seq1  CCTTCATCATAAGTCAAATGGAATGGGAGAAGTCTACTGTCAAAACTTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCATAAGTCAAATGGAATGGGAGAAGTCTACTGTCAAAACTTGT  346

seq1  AAAACTTCTTGCCAGGGAGAGTAAAGATGCTAAGACCTCAAGAAAGTGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCTTGCCAGGGAGAGTAAAGATGCTAAGACCTCAAGAAAGTGTT  396

seq1  TGCTGTCAGCATGGATGATACATAGTCTCAAGGGGGAAAGGTCCAACCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGCATGGATGATACATAGTCTCAAGGGGGAAAGGTCCAACCTC  446

seq1  AGCATAAACAGTACCCAATCCCAAGTCTACCCTCTTCATGATGGATGGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAACAGTACCCAATCCCAAGTCTACCCTCTTCATGATGGATGGTG  496

seq1  CCCATTGCCCACAAGAAGAAATTGGGAAGTGTCTTTGCAGGCTTCAGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCCCACAAGAAGAAATTGGGAAGTGTCTTTGCAGGCTTCAGATC  546

seq1  CTCTGCAAAATTTCAGATCAGCATATATATTTAAAGATAAGGAAGTCTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAAATTTCAGATCAGCATATATATTTAAAGATAAGGAAGTCTTT  596

seq1  GTGATTCTAAAAGCTATAATTTACATAAAGATGAAATAATGGATTTTTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTAAAAGCTATAATTTACATAAAGATGAAATAATGGATTTTTAT  646

seq1  GCATTCAATGCCACCTTAGAAAATTAGGGCAAGTCTTCATACTTCAGGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAATGCCACCTTAGAAAATTAGGGCAAGTCTTCATACTTCAGGAA  696

seq1  CCTGTTAGATGTTGTATGGAAATGGAACAGGATAGGGACACCCAGGCAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGATGTTGTATGGAAATGGAACAGGATAGGGACACCCAGGCAAA  746

seq1  AGAGAAGGGCCAGACCTCAGTAGTTGGATCTATCCTGAGGTATAAACAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGCCAGACCTCAGTAGTTGGATCTATCCTGAGGTATAAACAAA  796

seq1  GCATACTAGCAACAAGGAGTGGGATTCTAAAGCACCAAGCTAGGAAATCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTAGCAACAAGGAGTGGGATTCTAAAGCACCAAGCTAGGAAATCG  846

seq1  TGTGTTTCTGTGCTCTTTAGGACACCACAGAAACAATGGTGGCTAGTTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGTGCTCTTTAGGACACCACAGAAACAATGGTGGCTAGTTGA  896

seq1  CTCCTGTGCCATGTTCTCTTAAGAAATTACAATTACAAAACATTATTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGCCATGTTCTCTTAAGAAATTACAATTACAAAACATTATTTCT  946

seq1  ACAATGAAATCGCGTCATATAGACAAGAACAGCCAGCAGTGAAAATCTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAATCGCGTCATATAGACAAGAACAGCCAGCAGTGAAAATCTTA  996

seq1  ATCTTGTATTTCTACGTGAGCTTTGAGAGTTTGGAAACAGTAGAAACCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATTTCTACGTGAGCTTTGAGAGTTTGGAAACAGTAGAAACCAG  1046

seq1  GTGACAGTAACTGAGGCTGAGTGATTGATAGAGAAGAGAAAATTATTCAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTAACTGAGGCTGAGTGATTGATAGAGAAGAGAAAATTATTCAG  1096

seq1  ATCATGGTTTGGAATTAGAACACAGGATGCCTGGGTAAGGTTTGAAAAGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTTTGGAATTAGAACACAGGATGCCTGGGTAAGGTTTGAAAAGT  1146

seq1  GGGTTGAGAACGTTTAAGAAAGAATTC  1171
      |||||||||||||||||||||||||||
seq2  GGGTTGAGAACGTTTAAGAAAGAATTC  1173

seq1: chr2_13569862_13570570
seq2: B6Ng01-166J06.g_68_776

seq1  GAATTCAGGGCCAGAATGAGCTATGTAAAACCCTGCCTTAAAACCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCAGAATGAGCTATGTAAAACCCTGCCTTAAAACCAAGAG  50

seq1  AGTATAAGTATAGATGTACCTTTAAAAGCATCCTAAAGAGCATGTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGTATAGATGTACCTTTAAAAGCATCCTAAAGAGCATGTCAGAA  100

seq1  TGGCATAAGAAAAAGCCCAAAGACTTTAGTTTTAAATGAGGCAGTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAGAAAAAGCCCAAAGACTTTAGTTTTAAATGAGGCAGTAAAGG  150

seq1  CTGAGATTGGTGTCTTTGCCAAGCAGACCACGACAGGAGCCAGCTGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTGGTGTCTTTGCCAAGCAGACCACGACAGGAGCCAGCTGTCCC  200

seq1  ACCTTTGAATATGAATCGCAAGGTCAGCAGCAAACTCCAGGGCTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAATATGAATCGCAAGGTCAGCAGCAAACTCCAGGGCTGCACAC  250

seq1  TCTTCCATGCTAACTGCTACTCTGGTCACAACAAGCAGAATACAGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGCTAACTGCTACTCTGGTCACAACAAGCAGAATACAGAGCAA  300

seq1  GCTTAGCGTCCATCAGCAATGAATGGATAAAGAGAAAGTAATACATACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCGTCCATCAGCAATGAATGGATAAAGAGAAAGTAATACATACAC  350

seq1  ATAAAGGAATCTTAGGAAGCCATAAGCCAACACAAAGGAATGGAGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAATCTTAGGAAGCCATAAGCCAACACAAAGGAATGGAGTTTTG  400

seq1  CAGAAAAAAAAAGTGTGAAGCTCGAAATCACGATTTTAAACAGATAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAAAGTGTGAAGCTCGAAATCACGATTTTAAACAGATAAGCC  450

seq1  TGGCTCAGAAAGGCAAATACCATGTTTTCTCTCATATGCAGAATTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAAAGGCAAATACCATGTTTTCTCTCATATGCAGAATTTATAC  500

seq1  TTAAATTTATAGAGAGGTGTATATATAAATGTGTTTACATATGTGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTATAGAGAGGTGTATATATAAATGTGTTTACATATGTGTGTAA  550

seq1  GTGTAGGTTGTGGACAGAGAAAGGGAATCAATGGTGATGAGGAGACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTTGTGGACAGAGAAAGGGAATCAATGGTGATGAGGAGACTGTA  600

seq1  AAGTTGAGGGTTGTAGAATGTATGTGACATGAAAACTTAGTGGTGGATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGGGTTGTAGAATGTATGTGACATGAAAACTTAGTGGTGGATCG  650

seq1  AGGATGGCAGAGAACCAGCCAGCCGAGGGCATGGAGTAGGATAGTGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCAGAGAACCAGCCAGCCGAGGGCATGGAGTAGGATAGTGAAGT  700

seq1  GGGGAGTGA  709
      |||||||||
seq2  GGGGAGTGA  709