BAC Information

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BAC

Clone NameB6Ng01-166L16
Chromosome2 (Build37)
Map Location 110,496,263 - 110,641,773
singlet/doubletdoublet
Overlap geneMuc15
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L16.bB6Ng01-166L16.g
ACCDH958422DH958423
length1,1611,098
definitionDH958422|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L16, 5' end.DH958423|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,496,263 - 110,497,431)(110,640,659 - 110,641,773)
sequence
gaattcacttcatacttcatttaattttcatttattttgtatgtttgttc
attttgtggtgctgatagttgagtttatgtgttccacatgcatgctacgc
acactaccactgagctacatccccagatcacgtggaagacgttagagtcc
caggctgtctgcctggctcagaaccataggggaagtaaagaagtgaatac
ccttggcagaaactataaagcaaccataatcaagtaaacagagctttcaa
agtgttagaacggggtcagtgttctttcaataagtgaaaagggtttcctt
gattgagaatcactaatatgtatgcaaagtagttttattttgtgtgtgtg
actaatctaatatttcacattgtataaatatttttgttttacttatttga
acaaaatcaaactgaacaaataatagaaatcataacaatcatgtgttatg
ttctcactgtgtgtttatgtgtttgttctctgtgcatgtttatgtgttct
ctgtgtgattgtgttctctctgtgtttatgtgttttctgtatgtgtgtgt
atgtctgtgtgtgtttatgtgctctgcatgtgtgtgttatgtgcttatgt
gttctctctgtgtgttctgtgtaatttcacccagcatgcacagagagaaa
agcttggatatttctgttttgcaaaagatgtgtgctgatttctacaacat
accctgctccttcactcccggccgttctttgtatttcgcccccttaatta
atgcttcctttgagattctcttagttgaatatcctttcatttgtgctcca
tcaatgtggggtaaagttgacattcaaataaggattctacaacaattaat
gatcttttacaattaaattgactttgtttctagagagttttgaaaccaaa
taaagtcaacccatcaaaaacagaatctcccttccatgatgaaaaaatga
aaccaaaaaggtgttttatgtaaataatacactgcacgcatgcattatct
catagctcatagttgagatgcacgttaaagaaaaagcataggtattgccg
aacatttggcttcggatttcctgatgaacaatacaggtaacatcctggtg
taaatggtcctagggctccatagctggactcggttacacaggggtaaggt
gctaacatgta
gaattcaatgtgaattcatatcattgatcttctataaatattagtgggaa
gaagattataaaagaacaagccatttttccttgccctatagttttttaaa
ttagccccacctagctatgtatgagtcttatctctcactcctttaatatc
ttcctacttacctccctctgtttttcttctttctacaaatatttgaattc
tattatgtgtttagctaaaagctatatatttggactattcattgaacaaa
atagaagatggacagaaaactccccatgaggaattgcctttatcagattg
tgtatggatgtgcatatgagataggtgcttgattgctaattgatggagga
agacctcacccactctgagtagtgccacatctgggcaggcagtgtaagat
tgagtaagtaaagtagtggagaagaagaaggggaaagaggtggttagcag
tgtgtcttagtggattctactgtaacctgctaccttgtgtttctgtcaca
gctgtaacctgtaaaccaaataaaacctttctcctgaaagttacttttag
tcgctctcttatcacagcaagaaaagggccaactagaccacttacctttg
taaaattctaattatacaagcataaaacagtcagtaacaatataaataat
tcattaaaataaaagaagctatcaggtgttaaggaaaagaatattataga
aagtggaggagctgagagaaagaagtcatctgacctcatgcacagtgctg
ggatcactcagtacttcactcctcatagtaagattggaatagaggggagc
aaagtagataaggcaggatgttataataatttaatcaaaatgttatcaaa
attacatactgagtgaaaaatagtaaaaatgatgacaaaggaataacaga
ttttgtttaaatagttttagggccacaaataagatgcttaagtagtggtc
tactggttagctgtttccattttagatatctggagatcagctagcttttg
tgttttcatatcagatgcatctaaagctgtgtggattaattaaacaacct
tcaccacttagtgaatgtttgtccaagcaatggatgataggctattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110496263_110497431
seq2: B6Ng01-166L16.b_48_1208

seq1  GAATTCACTTCATACTTCATTTAATTTTCATTTATTTTGTATGTTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATACTTCATTTAATTTTCATTTATTTTGTATGTTTGTTC  50

seq1  ATTTTGTGGTGCTGATAGTTGAGTTTATGTGTTCCACATGCATGCTACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGGTGCTGATAGTTGAGTTTATGTGTTCCACATGCATGCTACGC  100

seq1  ACACTACCACTGAGCTACATCCCCAGATCACGTGGAAGACGTTAGAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCACTGAGCTACATCCCCAGATCACGTGGAAGACGTTAGAGTCC  150

seq1  CAGGCTGTCTGCCTGGCTCAGAACCATAGGGGAAGTAAAGAAGTGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTCTGCCTGGCTCAGAACCATAGGGGAAGTAAAGAAGTGAATAC  200

seq1  CCTTGGCAGAAACTATAAAGCAACCATAATCAAGTAAACAGAGCTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGAAACTATAAAGCAACCATAATCAAGTAAACAGAGCTTTCAA  250

seq1  AGTGTTAGAACGGGGTCAGTGTTCTTTCAATAAGTGAAAAGGGTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGAACGGGGTCAGTGTTCTTTCAATAAGTGAAAAGGGTTTCCTT  300

seq1  GATTGAGAATCACTAATATGTATGCAAAGTAGTTTTATTTTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGAATCACTAATATGTATGCAAAGTAGTTTTATTTTGTGTGTGTG  350

seq1  ACTAATCTAATATTTCACATTGTATAAATATTTTTGTTTTACTTATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTAATATTTCACATTGTATAAATATTTTTGTTTTACTTATTTGA  400

seq1  ACAAAATCAAACTGAACAAATAATAGAAATCATAACAATCATGTGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAAACTGAACAAATAATAGAAATCATAACAATCATGTGTTATG  450

seq1  TTCTCACTGTGTGTTTATGTGTTTGTTCTCTGTGCATGTTTATGTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGTGTGTTTATGTGTTTGTTCTCTGTGCATGTTTATGTGTTCT  500

seq1  CTGTGTGATTGTGTTCTCTCTGTGTTTATGTGTTTTCTGTATGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATTGTGTTCTCTCTGTGTTTATGTGTTTTCTGTATGTGTGTGT  550

seq1  ATGTCTGTGTGTGTTTATGTGCTCTGCATGTGTGTGTTATGTGCTTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGTGTGTTTATGTGCTCTGCATGTGTGTGTTATGTGCTTATGT  600

seq1  GTTCTCTCTGTGTGTTCTGTGTAATTTCACCCAGCATGCACAGAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCTGTGTGTTCTGTGTAATTTCACCCAGCATGCACAGAGAGAAA  650

seq1  AGCTTGGATATTTCTGTTTTGCAAAAGATGTGTGCTGATTTCTACAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGATATTTCTGTTTTGCAAAAGATGTGTGCTGATTTCTACAACAT  700

seq1  ACCCTGCTCCTTCACTCCCGGCCGTTCTTTGTATTTCGCCCCCTTAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTCCTTCACTCCCGGCCGTTCTTTGTATTTCGCCCCCTTAATTA  750

seq1  ATGCTTCCTTTGAGATTCTCTTAGTTGAATATCCTTTCATTTGTGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTTTGAGATTCTCTTAGTTGAATATCCTTTCATTTGTGCTCCA  800

seq1  TCAATGTGGGGTAAAGTTGACATTCAAATAAGGATTCTACAACAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGGGGTAAAGTTGACATTCAAATAAGGATTCTACAACAATTAAT  850

seq1  GATC-TTTACAATTAAATTGACTTTGTTTCTAGAGAGTTTTGAAACCAAA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTACAATTAAATTGACTTTGTTTCTAGAGAGTTTTGAAACCAAA  900

seq1  TAAAGTCAACCCATCAAAAAACAGAAATCTCCCTTCCATGATGAAAAAAT  949
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TAAAGTCAACCCATC-AAAAACAG-AATCTCCCTTCCATGATGAAAAAAT  948

seq1  GAAACCAAAAAAGGTGTTTTATGTAAATAATACACTGCACGCATGCATTA  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACC-AAAAAGGTGTTTTATGTAAATAATACACTGCACGCATGCATTA  997

seq1  TTCTCATTAGCTCATAGTTGAGAATGCACGTTATAGAAAAAGCATAAGTA  1049
       ||||| ||||||||||||||| |||||||||| |||||||||||| |||
seq2  -TCTCA-TAGCTCATAGTTGAG-ATGCACGTTAAAGAAAAAGCATAGGTA  1044

seq1  TTGCAGAACATTTGGCTTCAGATTTCCTGAATGAACAAATTACA-GTAAC  1098
      |||| |||||||||||||| ||||||||| ||||||||  |||| |||||
seq2  TTGCCGAACATTTGGCTTCGGATTTCCTG-ATGAACAA--TACAGGTAAC  1091

seq1  ATCCT-GTGTAAATGGTCTTAGAGCTCCATAGGCTGGGACTCGGGTTACA  1147
      ||||| |||||||||||| ||| |||||||| ||| |||||| |||||||
seq2  ATCCTGGTGTAAATGGTCCTAGGGCTCCATA-GCT-GGACTC-GGTTACA  1138

seq1  CA-GTGTAAAGTGCAAACATGTA  1169
      || | |||| |||| ||||||||
seq2  CAGGGGTAAGGTGCTAACATGTA  1161

seq1: chr2_110640659_110641773
seq2: B6Ng01-166L16.g_70_1167 (reverse)

seq1  ATAATAG-CTATCACTCATTTGCTTTGGACCAAACATTTCACTAAGTGGT  49
      ||||||| |||||| ||  |||| ||||| |||||| |||||||||||| 
seq2  ATAATAGCCTATCA-TCCATTGC-TTGGA-CAAACA-TTCACTAAGTGG-  45

seq1  TTAAAGGTTGTTTAATTTAATCCCACACAGCCTTTTAGATGCATCTTGAT  99
       | |||||||||||| ||||| |||||||||  |||||||||||| ||||
seq2  -TGAAGGTTGTTTAA-TTAAT-CCACACAGC--TTTAGATGCATC-TGAT  89

seq1  ATGAAAACACAAAAGCTTAGCTGATCTCCAGATATTCTAAAATGGAAACA  149
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  ATGAAAACACAAAAGC-TAGCTGATCTCCAGATA-TCTAAAATGGAAACA  137

seq1  GCTAAACCAGTAGGACCACCTACTTAAGCATCTTATTTGTGGCCCTAAAA  199
      ||| |||||||| ||||| ||||||||||||||||||||||||||| |||
seq2  GCT-AACCAGTA-GACCA-CTACTTAAGCATCTTATTTGTGGCCCT-AAA  183

seq1  ACTATTTTAAACAAAATCTGTTATTCCTTTGTCATCATTTTTACTATTTT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTA-TTTAAACAAAATCTGTTATTCCTTTGTCATCATTTTTACTATTTT  232

seq1  TCACTCAGTATGTAATTTTGATAACATTTTGATTAAATTATTATAACATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTATGTAATTTTGATAACATTTTGATTAAATTATTATAACATC  282

seq1  CTGCCTTATCTACTTTGCTCCCCTCTATTCCAATCTTACTATGAGGAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTATCTACTTTGCTCCCCTCTATTCCAATCTTACTATGAGGAGTG  332

seq1  AAGTACTGAGTGATCCCAGCACTGTGCATGAGGTCAGATGACTTCTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGAGTGATCCCAGCACTGTGCATGAGGTCAGATGACTTCTTTCT  382

seq1  CTCAGCTCCTCCACTTTCTATAATATTCTTTTCCTTAACACCTGATAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCCTCCACTTTCTATAATATTCTTTTCCTTAACACCTGATAGCT  432

seq1  TCTTTTATTTTAATGAATTATTTATATTGTTACTGACTGTTTTATGCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTTTAATGAATTATTTATATTGTTACTGACTGTTTTATGCTTG  482

seq1  TATAATTAGAATTTTACAAAGGTAAGTGGTCTAGTTGGCCCTTTTCTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGAATTTTACAAAGGTAAGTGGTCTAGTTGGCCCTTTTCTTGC  532

seq1  TGTGATAAGAGAGCGACTAAAAGTAACTTTCAGGAGAAAGGTTTTATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAGAGAGCGACTAAAAGTAACTTTCAGGAGAAAGGTTTTATTTG  582

seq1  GTTTACAGGTTACAGCTGTGACAGAAACACAAGGTAGCAGGTTACAGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGTTACAGCTGTGACAGAAACACAAGGTAGCAGGTTACAGTAG  632

seq1  AATCCACTAAGACACACTGCTAACCACCTCTTTCCCCTTCTTCTTCTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTAAGACACACTGCTAACCACCTCTTTCCCCTTCTTCTTCTCCA  682

seq1  CTACTTTACTTACTCAATCTTACACTGCCTGCCCAGATGTGGCACTACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTACTTACTCAATCTTACACTGCCTGCCCAGATGTGGCACTACTC  732

seq1  AGAGTGGGTGAGGTCTTCCTCCATCAATTAGCAATCAAGCACCTATCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGTGAGGTCTTCCTCCATCAATTAGCAATCAAGCACCTATCTCA  782

seq1  TATGCACATCCATACACAATCTGATAAAGGCAATTCCTCATGGGGAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATCCATACACAATCTGATAAAGGCAATTCCTCATGGGGAGTTT  832

seq1  TCTGTCCATCTTCTATTTTGTTCAATGAATAGTCCAAATATATAGCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCATCTTCTATTTTGTTCAATGAATAGTCCAAATATATAGCTTTT  882

seq1  AGCTAAACACATAATAGAATTCAAATATTTGTAGAAAGAAGAAAAACAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACACATAATAGAATTCAAATATTTGTAGAAAGAAGAAAAACAGA  932

seq1  GGGAGGTAAGTAGGAAGATATTAAAGGAGTGAGAGATAAGACTCATACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTAAGTAGGAAGATATTAAAGGAGTGAGAGATAAGACTCATACAT  982

seq1  AGCTAGGTGGGGCTAATTTAAAAAACTATAGGGCAAGGAAAAATGGCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTGGGGCTAATTTAAAAAACTATAGGGCAAGGAAAAATGGCTTG  1032

seq1  TTCTTTTATAATCTTCTTCCCACTAATATTTATAGAAGATCAATGATATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATAATCTTCTTCCCACTAATATTTATAGAAGATCAATGATATG  1082

seq1  AATTCACATTGAATTC  1115
      ||||||||||||||||
seq2  AATTCACATTGAATTC  1098