BAC Information

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BAC

Clone NameB6Ng01-166L21
Chromosome2 (Build37)
Map Location 165,825,585 - 165,971,588
singlet/doubletdoublet
Overlap geneNcoa3, Sulf2
Upstream geneNcoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780
Downstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L21.bB6Ng01-166L21.g
ACCDH958432DH958433
length1,087659
definitionDH958432|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L21, 5' end.DH958433|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,825,585 - 165,826,703)(165,970,930 - 165,971,588)
sequence
gaattccactgcactaaacttcaggggactgatattttgttgtaatagag
taaggatttatcagatgttattggtccttttcagttctgcaagtaacttg
ggaagttgctgttcattttaccagtttgacaagctgttactccccaagct
tccatttaatgcttttggacaaaggggaaaaaaaaaaaaaaaaaagtcca
tggtctgctggggagaaaattaaccacctgtgtttgagtctcttcactgg
gagagctcagcagtgtggtaagatttgactgagtgtcccacatttaaaac
gtgatcagaggaaatgagactccaggtcggcaggccattgctggtaatct
gttctgttctcggaaactttaagatgcgtaaatgcctttcattctggtgt
aaaatgtctaagaagggacgccttggccttttcatagtttgagacacttg
gtagttcccccttttaaaatgtgatggtgatatttcagtgtttaatgttg
acaattttgatataaatttgaatattccccccccccccagaaactggttt
aatatatccatgagaaaaaaaaaatctatcctgtgcttagaaatattttt
tccctcctgttatgtacatttttactggctttttaccaagctatttgtag
ctcatcatacccaaggctggcgactttctttcagtttgcttagaattttg
gttggtgcagtaagacatttttgaggccattcttttcagtagatggtcca
tgaaggagggaaatctgaaagagggaatttcaaagcaacccaagcagcgt
ttgaaagtcctctggtcttgagaataatgactggcgggcaggcaggaagc
ctgcagctgtgttgtggtattgttcctccatctctggcatctgagagctt
catacatagaggagaagcccggggagggagagaaggcatcacttaggaaa
tcgaactctctgctcactgaaatccagactaaattattttattagacatg
ttctcatatctgtcaactgacatttttatatgagtactgctatttggaga
gcgcaggattctcctcagtcaaacactgacaggatac
gaattctcttatttcctctctcctcattaaaatgtcagcctagtgtggtg
gggccttggtcttctcagagcttggcccagccctgcaggtaccccggaaa
gaggcctgcagattggctgctgaaaggaacggagtctgtccttgctggaa
ggtgactgactgctcagaccctggaagtccaaacctgtttgtcgctggca
gagaacaagcttaaagtggaactggttagattcacacattcccacagtag
ctggcagaggaggggtcatcaccctgatgtcccggcagggacagcaggcc
tcaggaacacggggcgcttgggccatgtgggaagtgaaaagttcaccttt
gagacaggtgatgtgcctcatctcctccctggcctcccaacatctaagcg
catcacaggatgggctctgagcactgcctgggttccgggggacccaggat
gatttagggctggagtagaatcctgctccgtgtattaggggctcatgtct
gcagacctgggagtacagagccctgtctagaaaacaaaagaaattgtaag
gcctccaaattgactacccagggcctgtgtttggcttttatgttcttcac
ccatgtgttattttgaaccttttggggggaaaatcaattaatagaatgtt
ggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165825585_165826703
seq2: B6Ng01-166L21.b_43_1129

seq1  GAATTCCACTGCACTAAACTTCAGGGGACTGATATTTTGTTGTAATAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCACTAAACTTCAGGGGACTGATATTTTGTTGTAATAGAG  50

seq1  TAAGGATTTATCAGATGTTATTGGTCCTTTTCAGTTCTGCAAGTAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTTATCAGATGTTATTGGTCCTTTTCAGTTCTGCAAGTAACTTG  100

seq1  GGAAGTTGCTGTTCATTTTACCAGTTTGACAAGCTGTTACTCCCCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGCTGTTCATTTTACCAGTTTGACAAGCTGTTACTCCCCAAGCT  150

seq1  TCCATTTAATGCTTTTGGACAAAGGGGAAAAAAAAAAAAAAAAAAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAATGCTTTTGGACAAAGGGGAAAAAAAAAAAAAAAAAAGTCCA  200

seq1  TGGTCTGCTGGGGAGAAAATTAACCACCTGTGTTTGAGTCTCTTCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCTGGGGAGAAAATTAACCACCTGTGTTTGAGTCTCTTCACTGG  250

seq1  GAGAGCTCAGCAGTGTGGTAAGATTTGACTGAGTGTCCCACATTTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCAGCAGTGTGGTAAGATTTGACTGAGTGTCCCACATTTAAAAC  300

seq1  GTGATCAGAGGAAATGAGACTCCAGGTCGGCAGGCCATTGCTGGTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGAGGAAATGAGACTCCAGGTCGGCAGGCCATTGCTGGTAATCT  350

seq1  GTTCTGTTCTCGGAAACTTTAAGATGCGTAAATGCCTTTCATTCTGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTCGGAAACTTTAAGATGCGTAAATGCCTTTCATTCTGGTGT  400

seq1  AAAATGTCTAAGAAGGGACGCCTTGGCCTTTTCATAGTTTGAGACACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTAAGAAGGGACGCCTTGGCCTTTTCATAGTTTGAGACACTTG  450

seq1  GTAGTTCCCCCTTTTAAAATGTGATGGTGATATTTCAGTGTTTAATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCCCCTTTTAAAATGTGATGGTGATATTTCAGTGTTTAATGTTG  500

seq1  ACAATTTTGATATAAATTTGAATATTCCCCCCCCCCCCAGAAACTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGATATAAATTTGAATATTCCCCCCCCCCCCAGAAACTGGTTT  550

seq1  AATATATCCATGAGAAAAAAAAAATCTATCCTGTGCTTAGAAATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCCATGAGAAAAAAAAAATCTATCCTGTGCTTAGAAATATTTTT  600

seq1  TCCCTCCTGTTATGTACATTTTTACTGGCTTTTTACCAAGCTATTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGTTATGTACATTTTTACTGGCTTTTTACCAAGCTATTTGTAG  650

seq1  CTCATCATACCCAAGGCTGGCGACTTTCTTTCAGTTTGCTTAGAATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATACCCAAGGCTGGCGACTTTCTTTCAGTTTGCTTAGAATTTTG  700

seq1  GTTGGTGCAGTAAGACATTTTTGAGGCCATTCTTTTCAGTAGATGGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCAGTAAGACATTTTTGAGGCCATTCTTTTCAGTAGATGGTCCA  750

seq1  TGAAGGAGGGAAATCTGAAAGAGGGAATTTCAAAGCAACCCAAGCAGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGGAAATCTGAAAGAGGGAATTTCAAAGCAACCCAAGCAGCGT  800

seq1  TTGAAAGTCCTCTGGTCTTGAGAATAATGACTGGCGGGCAGGCAGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCCTCTGGTCTTGAGAATAATGACTGGCGGGCAGGCAGGAAGC  850

seq1  CTGCAGCTGTGTTGTGGTATTGTTCCTCCATCTCTGGCATCTGAGAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGTGTTGTGGTATTGTTCCTCCATCTCTGGCATCTGAGAGCTT  900

seq1  CAATACAATAGAGGAGAAAGCCCGGGGAGGGAGAGAAAGGCATCACTTAG  950
      | |||| ||||||||| |||||||||||||||||| ||||||||||||||
seq2  C-ATAC-ATAGAGGAG-AAGCCCGGGGAGGGAGAG-AAGGCATCACTTAG  946

seq1  GAAAATCGAACTCTCTGCTCAACTGAAATCCAAGACTAAATTATTTTATT  1000
      | |||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  G-AAATCGAACTCTCTGCTC-ACTGAAATCC-AGACTAAATTATTTTATT  993

seq1  TAAGAACAATTGTTTCTCATAATCTGTTCCAAACTGACATTTTTTATAAT  1050
        || |||  || ||||||| ||||||    |||||||| ||||||| ||
seq2  --AG-ACA--TG-TTCTCAT-ATCTGT---CAACTGACA-TTTTTAT-AT  1031

seq1  GGAAGTTAACTGCTATTTGGAAGAGCCGCAGGATCCCTTCCTCAGTTTCA  1100
      |  |||  |||||||||||| |||| |||||||| |  |||||||  |||
seq2  G--AGT--ACTGCTATTTGG-AGAG-CGCAGGATTC--TCCTCAG--TCA  1071

seq1  AAACAACTGACAAGGATAC  1119
      ||   |||||| |||||||
seq2  AA--CACTGAC-AGGATAC  1087

seq1: chr2_165970930_165971588
seq2: B6Ng01-166L21.g_66_724 (reverse)

seq1  CCCCACCCCAACATTCTATTAATTGATTTTCCCCCCAAAAGGTTCAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCAACATTCTATTAATTGATTTTCCCCCCAAAAGGTTCAAAAT  50

seq1  AACACATGGGTGAAGAACATAAAAGCCAAACACAGGCCCTGGGTAGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGGGTGAAGAACATAAAAGCCAAACACAGGCCCTGGGTAGTCAA  100

seq1  TTTGGAGGCCTTACAATTTCTTTTGTTTTCTAGACAGGGCTCTGTACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGCCTTACAATTTCTTTTGTTTTCTAGACAGGGCTCTGTACTCC  150

seq1  CAGGTCTGCAGACATGAGCCCCTAATACACGGAGCAGGATTCTACTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCAGACATGAGCCCCTAATACACGGAGCAGGATTCTACTCCAG  200

seq1  CCCTAAATCATCCTGGGTCCCCCGGAACCCAGGCAGTGCTCAGAGCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATCATCCTGGGTCCCCCGGAACCCAGGCAGTGCTCAGAGCCCAT  250

seq1  CCTGTGATGCGCTTAGATGTTGGGAGGCCAGGGAGGAGATGAGGCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATGCGCTTAGATGTTGGGAGGCCAGGGAGGAGATGAGGCACATC  300

seq1  ACCTGTCTCAAAGGTGAACTTTTCACTTCCCACATGGCCCAAGCGCCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTCAAAGGTGAACTTTTCACTTCCCACATGGCCCAAGCGCCCCG  350

seq1  TGTTCCTGAGGCCTGCTGTCCCTGCCGGGACATCAGGGTGATGACCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGAGGCCTGCTGTCCCTGCCGGGACATCAGGGTGATGACCCCTC  400

seq1  CTCTGCCAGCTACTGTGGGAATGTGTGAATCTAACCAGTTCCACTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGCTACTGTGGGAATGTGTGAATCTAACCAGTTCCACTTTAAG  450

seq1  CTTGTTCTCTGCCAGCGACAAACAGGTTTGGACTTCCAGGGTCTGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTCTGCCAGCGACAAACAGGTTTGGACTTCCAGGGTCTGAGCAG  500

seq1  TCAGTCACCTTCCAGCAAGGACAGACTCCGTTCCTTTCAGCAGCCAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCTTCCAGCAAGGACAGACTCCGTTCCTTTCAGCAGCCAATCT  550

seq1  GCAGGCCTCTTTCCGGGGTACCTGCAGGGCTGGGCCAAGCTCTGAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTCTTTCCGGGGTACCTGCAGGGCTGGGCCAAGCTCTGAGAAGA  600

seq1  CCAAGGCCCCACCACACTAGGCTGACATTTTAATGAGGAGAGAGGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCCCACCACACTAGGCTGACATTTTAATGAGGAGAGAGGAAATA  650

seq1  AGAGAATTC  659
      |||||||||
seq2  AGAGAATTC  659