BAC Information

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BAC

Clone NameB6Ng01-166O12
Chromosome2 (Build37)
Map Location 167,041,856 - 167,176,318
singlet/doubletdoublet
Overlap genePtgis, LOC668951, B4galt5
Upstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1
Downstream geneSlc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O12.bB6Ng01-166O12.g
ACCDH958548DH958549
length5071,026
definitionDH958548|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O12, 5' end.DH958549|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,041,856 - 167,042,368)(167,175,294 - 167,176,318)
sequence
actttgtagagcaggttggcctccaactcagaaatccgcctgcctctgcc
tcccaagtgctgggattaaaggcgtgcgccaccacgcccagctgtgtcgg
gttcttgagagctccccatgtcctgggagcacaggccccactcaggctat
gagagtccccattcaagatcaacatctggagttaaaaaaaacaacaacaa
ggacacagggaggaggtcacagcatcacctcagcaatggttcagatgtcc
ccagtgttccctgaccagaggcaaaggtctcaactcagccacagaaatat
ctggctgtccctgaggcccaaccttacaattgcaatctctcatcgtgcag
tcattgtggctgcatgagtatgttgtttgttgtgtatggtgtgtatgtgg
gtacatgtgtatgttggtgcgttcatcaatgtgtgcctgtgctcatgtat
gcatatgtgcatgtgtgcatttgtgcatgtgtacatgtgtgcctgtgtgc
ttgtgcg
gaattccgttggatgccttccctctgaggaatcctgccccgagctgctca
cttcctttcctgtggagcctgctctgggactttaggactagccagccatc
tctgtttcctctggtgttagtgggtgctctgcatcccctctgttgatctt
ttaggtactgggcactgagctctgagcacatacatagcaaaacatgaaac
agaatctctgtccttgtagagcactggtttgagaaaccaaaaggaacaca
taccaaaacatggctttggaggtgatgggaaagtcgaggcttggaagtgc
acatgacagtgcagaatgagaaatggggttagtggtcaagccccggtggc
aggccacttttgatttgagcccttacttcacaacttagacgacttgcttc
tctttccagaagcttcagttttctcatcggtgcaatggggccaaagtggg
ggtaggggagccacgatctcaggacttagagagaggctgttactggctaa
gaagccctgtttctcggtgtcttaacattgacagttgtcaccactgttct
gtcctgtaggatgtgaccttgtttggatctcttcttctttcctgggattt
tatccttggattcattgaaggcggatcaagccccttcttccttccttccg
gcttttgcatttgtagttccccttagtgggaccactctttctccacctgg
cactttcacattctttttgtgttcatgccacccaggaaggagaggcttcc
ccctcaattctcagactagagtagaatgcatccgaaacatcttcatgtct
aattgtttttcatatctcttatcatcatcatctgtatattgatttttttc
ttattcgcattaatacaggttcccagaggaatctttgctccgtggagcat
tcccggccccaggacccgtaactgccactttattataatggtgtctggaa
ttgaatggatgaggaaggtcgaacacgaatgtcccggtcctctgcatctt
gctctgctgcatcgcgggctatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167041856_167042368
seq2: B6Ng01-166O12.b_47_559

seq1  GAATTCACTTTGTAGAGCAGGTTGGCCTCCAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGAGCAGGTTGGCCTCCAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTG  100

seq1  TGTCGGGTTCTTGAGAGCTCCCCATGTCCTGGGAGCACAGGCCCCACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGGTTCTTGAGAGCTCCCCATGTCCTGGGAGCACAGGCCCCACTCA  150

seq1  GGCTATGAGAGTCCCCATTCAAGATCAACATCTGGAGTTAAAAAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGAGAGTCCCCATTCAAGATCAACATCTGGAGTTAAAAAAAACAA  200

seq1  CAACAAGGACACAGGGAGGAGGTCACAGCATCACCTCAGCAATGGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGACACAGGGAGGAGGTCACAGCATCACCTCAGCAATGGTTCAG  250

seq1  ATGTCCCCAGTGTTCCCTGACCAGAGGCAAAGGTCTCAACTCAGCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCAGTGTTCCCTGACCAGAGGCAAAGGTCTCAACTCAGCCACAG  300

seq1  AAATATCTGGCTGTCCCTGAGGCCCAACCTTACAATTGCAATCTCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGGCTGTCCCTGAGGCCCAACCTTACAATTGCAATCTCTCATC  350

seq1  GTGCAGTCATTGTGGCTGCATGAGTATGTTGTTTGTTGTGTATGGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTCATTGTGGCTGCATGAGTATGTTGTTTGTTGTGTATGGTGTGT  400

seq1  ATGTGGGTACATGTGTATGTTGGTGCGTTCATCAATGTGTGCCTGTGCGC  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGTGGGTACATGTGTATGTTGGTGCGTTCATCAATGTGTGCCTGTGCTC  450

seq1  ATGTATGCATATGTGCATGTGTGCATTTGTGCATGTGTACATGTGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCATATGTGCATGTGTGCATTTGTGCATGTGTACATGTGTGCCT  500

seq1  GTGTGCATGTGCG  513
      |||||| ||||||
seq2  GTGTGCTTGTGCG  513

seq1: chr2_167175294_167176318
seq2: B6Ng01-166O12.g_68_1093 (reverse)

seq1  CCAGGTAGCCCGCCGCTGCAGCAGAGCAAGGATGCAGAGG-CCGGGGCAT  49
      |||| ||||||| || ||||||||||||| |||||||||| ||||| |||
seq2  CCAGATAGCCCG-CGATGCAGCAGAGCAA-GATGCAGAGGACCGGGACAT  48

seq1  TCGTGTTCGCCCTCACTCATCCATTC-ATTCCAGACACCATTTATGATAA  98
      ||||||||| |||  ||||||||||| ||||||||||||| |||| ||||
seq2  TCGTGTTCGACCTTCCTCATCCATTCAATTCCAGACACCA-TTATAATAA  97

seq1  AGTGGCAGTTACGGGTCCTGGGGCCGGGGATGCTCCACGGAGCAAAGATT  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGGCAGTTACGGGTCCTGGGGCCGGGAATGCTCCACGGAGCAAAGATT  147

seq1  CCTCTGGGAACCTGTATTAATGCGAATAAGAAAAAAATCAATATAACAGA  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTCTGGGAACCTGTATTAATGCGAATAAGAAAAAAATCAATAT-ACAGA  196

seq1  TGATGATGATAAGAGATATG-AAAACAATTAGACATGAAGATGTTTCGGA  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGATGATGATAAGAGATATGAAAAACAATTAGACATGAAGATGTTTCGGA  246

seq1  TGCATTCTACTCTAGTCTGAG-ATTGAGGGGGAAGCCTCTCCTTCCTGGG  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCATTCTACTCTAGTCTGAGAATTGAGGGGGAAGCCTCTCCTTCCTGGG  296

seq1  TGGCATGAACAC-AAAAGAATGTGAAAGTGCCAGGTGGAGAAAGAGTGGT  345
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAACACAAAAAGAATGTGAAAGTGCCAGGTGGAGAAAGAGTGGT  346

seq1  CCCACTAAGGGGAACTACAAATGCAAAAGCCGGAAGGAAGGAAGAAGGGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAGGGGAACTACAAATGCAAAAGCCGGAAGGAAGGAAGAAGGGG  396

seq1  CTTGATCCGCCTTCAATGAATCCAAGGATAAAATCCCAGGAAAGAAGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCGCCTTCAATGAATCCAAGGATAAAATCCCAGGAAAGAAGAAG  446

seq1  AGATCCAAACAAGGTCACATCCTACAGGACAGAACAGTGGTGACAACTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAACAAGGTCACATCCTACAGGACAGAACAGTGGTGACAACTGT  496

seq1  CAATGTTAAGACACCGAGAAACAGGGCTTCTTAGCCAGTAACAGCCTCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTAAGACACCGAGAAACAGGGCTTCTTAGCCAGTAACAGCCTCTC  546

seq1  TCTAAGTCCTGAGATCGTGGCTCCCCTACCCCCACTTTGGCCCCATTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCCTGAGATCGTGGCTCCCCTACCCCCACTTTGGCCCCATTGCA  596

seq1  CCGATGAGAAAACTGAAGCTTCTGGAAAGAGAAGCAAGTCGTCTAAGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGAGAAAACTGAAGCTTCTGGAAAGAGAAGCAAGTCGTCTAAGTTG  646

seq1  TGAAGTAAGGGCTCAAATCAAAAGTGGCCTGCCACCGGGGCTTGACCACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAGGGCTCAAATCAAAAGTGGCCTGCCACCGGGGCTTGACCACT  696

seq1  AACCCCATTTCTCATTCTGCACTGTCATGTGCACTTCCAAGCCTCGACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATTTCTCATTCTGCACTGTCATGTGCACTTCCAAGCCTCGACTT  746

seq1  TCCCATCACCTCCAAAGCCATGTTTTGGTATGTGTTCCTTTTGGTTTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACCTCCAAAGCCATGTTTTGGTATGTGTTCCTTTTGGTTTCTC  796

seq1  AAACCAGTGCTCTACAAGGACAGAGATTCTGTTTCATGTTTTGCTATGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTGCTCTACAAGGACAGAGATTCTGTTTCATGTTTTGCTATGTA  846

seq1  TGTGCTCAGAGCTCAGTGCCCAGTACCTAAAAGATCAACAGAGGGGATGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGAGCTCAGTGCCCAGTACCTAAAAGATCAACAGAGGGGATGC  896

seq1  AGAGCACCCACTAACACCAGAGGAAACAGAGATGGCTGGCTAGTCCTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCACTAACACCAGAGGAAACAGAGATGGCTGGCTAGTCCTAAA  946

seq1  GTCCCAGAGCAGGCTCCACAGGAAAGGAAGTGAGCAGCTCGGGGCAGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGCAGGCTCCACAGGAAAGGAAGTGAGCAGCTCGGGGCAGGAT  996

seq1  TCCTCAGAGGGAAGGCATCCAACGGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  TCCTCAGAGGGAAGGCATCCAACGGAATTC  1026