BAC Information

Click to search

BAC

Clone NameB6Ng01-166P13
Chromosome2 (Build37)
Map Location 16,525,824 - 16,527,064
singlet/doubletsinglet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166P13.bB6Ng01-166P13.g
ACCDH958596DH958597
length1,2221,193
definitionDH958596|Mus musculus domesticus DNA, BAC clone: B6Ng01-166P13, 5' end.DH958597|Mus musculus domesticus DNA, BAC clone: B6Ng01-166P13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctagtcttaagtaaagcaaattataaatagtagtcaatgtcaaa
tgtctattggataaacatgattactgtgtttttggctggaagcaatcaca
tattcattagtaatcaggcatttgttcctatttagcttaagaatgcatta
tgcaattcgtgtactcactaaccacatggcaggactgctgagtgacaagg
aaaagtccatctgttgatcatttatgaatgggattattaagtacaaagtc
aagactgcagtttctttccagccctcacctcctcttttcagtgagggccc
aggagcagcatagggtaatttgcggtcactggtaaagttaaaccactctc
tctgggtccttacccttttatctgttcagatggcttagcggtctccatga
ctgagctctggctgctgacatgaaggacctaatgctctgtgaaatcatga
gaattctgagacttgatacagatcctactctacaggactagggtctggta
gaccattgcagtcatttcaaattaagagattaaatttacataaaggaatt
ctattatttaaaagtgcagtgttagaatccagatatggtgatatctgtct
gttatactgcaaaggccaatctgggcaaatgtagcatcttctagagcaac
ctttgatatataatgaggccctagtaaattaaaaaaaaaaatagtgtttt
ctgtagtcattaattccatgaacattttacatcccctatttatatttact
aaatactgacactggggggctggtgagatggctcagtgggtaagagcacc
cgactgctcttccaaaggtcaggagttcaaatcccagcaaccacatggtg
gctcacaaccatccctaacgagatctgactccctcttctagagtgtctga
ggacagctacagtgtacttgcatatataaataaataaataaataaataaa
taaataaataaataaatctttaaaaaaaatactgacactggggctagaga
tgaggaattattgctctgcagtcacagactcataagtactataagtagtg
acaagactctgctgacttcatttcactccatagttgggcgagggagatcc
acaacttttatttttcataattccatgtttttaaggcccaatacacggta
gttgagcactccagaccatgaccgaatctaagttgattaggtaagtcgaa
tggttcccagtgtatggtacca
gaattctttgcttatccctgagccccattttttaatgggttatttgattt
tcttgagtccaccttgttgagttctatatatatttattggatattagtcc
cctatctgatttaggattggtaaagatcctttcccaatctgctggtggcc
tttttgtcttattgatggtgtcttttgccttacaaaagctttgcaattta
tgaggtcccatttgttgattctcgatcttacagcacaatccatgatgttc
tatttaggaatttttccccggtgcccatatcttcgagactttcccctact
ttctcctctaaaagtttcagtgtctctggttttatgtggagttccttaat
ccacttatatttgaccttagtacaaggagataggaatgtatcaattcaca
ttcttctaaatgataaccaccagttgtgctagcaccatttgttgaaaatg
ctcttttttccactggatggttttagctcccttgtcaaaaatcaagtgac
cataggtgtgtgggttcatttctgggtcttcaattctattccattgttct
atttgtctgtcgctatagcagtaccatgcagtttttatcaaaattgcttt
gtagtacagctttaggtcaggcatggtgattccaccagagggttttttat
ccttgtgaagagtttttgctatcctagtttttcgttattccagatgaatt
tgtagatttccctttgtaattcactgaagaattgagttggaattttgatg
gggattgcattaaatctgtagattgcttttggcaagatagctatttttac
catattgattctgccaactcatgagcatgggagatctttccatcttctga
gatcttctttatttctttcttcagagactcgaagttctatcatacagatc
tttcacttccttagttagagacaccccaaggtatttttatattatttttg
actattgagaggtgttatttccctaatttctctctcagcctgttaccctt
tgtgtacagaaaggcatgactgtttgagtaattatgtacagctacttcat
gagctgtttatccagttaggattctctcgggtggaattttaggcactaat
tattaccatctatcatccacaaagtgattaaactctctttcatggtaatg
gatcattggtggcaataactcgcgtagggccttctagaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16525824_16527064
seq2: B6Ng01-166P13.b_46_1267

seq1  GAATTCCTAGTCTTAAGTAAAGCAAATTATAAATAGTAGTCAATGTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTCTTAAGTAAAGCAAATTATAAATAGTAGTCAATGTCAAA  50

seq1  TGTCTATTGGATAAACATGATTACTGTGTTTTTGGCTGGAAGCAATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTGGATAAACATGATTACTGTGTTTTTGGCTGGAAGCAATCACA  100

seq1  TATTCATTAGTAATCAGGCATTTGTTCCTATTTAGCTTAAGAATGCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTAGTAATCAGGCATTTGTTCCTATTTAGCTTAAGAATGCATTA  150

seq1  TGCAATTCGTGTACTCACTAACCACATGGCAGGACTGCTGAGTGACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCGTGTACTCACTAACCACATGGCAGGACTGCTGAGTGACAAGG  200

seq1  AAAAGTCCATCTGTTGATCATTTATGAATGGGATTATTAAGTACAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCATCTGTTGATCATTTATGAATGGGATTATTAAGTACAAAGTC  250

seq1  AAGACTGCAGTTTCTTTCCAGCCCTCACCTCCTCTTTTCAGTGAGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCAGTTTCTTTCCAGCCCTCACCTCCTCTTTTCAGTGAGGGCCC  300

seq1  AGGAGCAGCATAGGGTAATTTGCGGTCACTGGTAAAGTTAAACCACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCATAGGGTAATTTGCGGTCACTGGTAAAGTTAAACCACTCTC  350

seq1  TCTGGGTCCTTACCCTTTTATCTGTTCAGATGGCTTAGCGGTCTCCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCTTACCCTTTTATCTGTTCAGATGGCTTAGCGGTCTCCATGA  400

seq1  CTGAGCTCTGGCTGCTGACATGAAGGACCTAATGCTCTGTGAAATCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTGGCTGCTGACATGAAGGACCTAATGCTCTGTGAAATCATGA  450

seq1  GAATTCTGAGACTTGATACAGATCCTACTCTACAGGACTAGGGTCTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACTTGATACAGATCCTACTCTACAGGACTAGGGTCTGGTA  500

seq1  GACCATTGCAGTCATTTCAAATTAAGAGATTAAATTTACATAAAGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGCAGTCATTTCAAATTAAGAGATTAAATTTACATAAAGGAATT  550

seq1  CTATTATTTAAAAGTGCAGTGTTAGAATCCAGATATGGTGATATCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTAAAAGTGCAGTGTTAGAATCCAGATATGGTGATATCTGTCT  600

seq1  GTTATACTGCAAAGGCCAATCTGGGCAAATGTAGCATCTTCTAGAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTGCAAAGGCCAATCTGGGCAAATGTAGCATCTTCTAGAGCAAC  650

seq1  CTTTGATATATAATGAGGCCCTAGTAAATTAAAAAAAAAAATAGTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATATAATGAGGCCCTAGTAAATTAAAAAAAAAAATAGTGTTTT  700

seq1  CTGTAGTCATTAATTCCATGAACATTTTACATCCCCTATTTATATTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCATTAATTCCATGAACATTTTACATCCCCTATTTATATTTACT  750

seq1  AAATACTGACACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGACACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACC  800

seq1  CGACTGCTCTTCCAAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCTCTTCCAAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTG  850

seq1  GCTCACAACCATCCCTAACGAGATCTGACTCCCTCTTCTAGAGTGTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCCCTAACGAGATCTGACTCCCTCTTCTAGAGTGTCTGA  900

seq1  GGACAGCTACAGTGTACTTGCATATAATAAATAAATAAATAAATAAATAA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGACAGCTACAGTGTACTTGCATAT-ATAAATAAATAAATAAATAAATAA  949

seq1  ATAAATAAATAAATAAATCTTTAAAAAAAATACTGACACTGGGGCTAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATCTTTAAAAAAAATACTGACACTGGGGCTAGAG  999

seq1  ATGAGGAAATATTGCTCCTGCAGTCACAGACTCATAAGTACTATAAAGGT  1050
      |||||||| ||||||| |||||||||||||||||||||||||||||  ||
seq2  ATGAGGAATTATTGCT-CTGCAGTCACAGACTCATAAGTACTATAA--GT  1046

seq1  AAGTGACCAAAGACTCTGCTGACCTCA-TTCACTTCCATAGT--GGCGA-  1096
       ||||||  |||||||||||||| ||| ||||| ||||||||  ||||| 
seq2  -AGTGAC--AAGACTCTGCTGACTTCATTTCAC-TCCATAGTTGGGCGAG  1092

seq1  GGAGATCCACAACTTTTATTTTTCATAATTCCAATTGTTTTTTTTAAAAA  1146
      |||||||||||||||||||||||||||||||||  |||||||     || 
seq2  GGAGATCCACAACTTTTATTTTTCATAATTCCA--TGTTTTT-----AAG  1135

seq1  GCCAAATTACACAGTAGTTGAGCA-TCTAGACACATAGACCAGATTCATA  1195
      ||| || ||||| ||||||||||| || |||| ||| |||| || || ||
seq2  GCCCAA-TACACGGTAGTTGAGCACTCCAGAC-CAT-GACC-GAATC-TA  1180

seq1  AGTTGAGTAGGGAAAAATACAGAAGGTCTCCAGGTGTATGGTACCA  1241
      |||||| |||| ||       ||| |  |||  |||||||||||||
seq2  AGTTGATTAGGTAA----GTCGAATGGTTCCCAGTGTATGGTACCA  1222