BAC Information

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BAC

Clone NameB6Ng01-167I04
Chromosome2 (Build37)
Map Location 129,556,261 - 129,556,986
singlet/doubletsinglet
Overlap genenone
Upstream geneMertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn
Downstream genePpia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167I04.bB6Ng01-167I04.g
ACCDH958986DH958987
length1,2391,084
definitionDH958986|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I04, 5' end.DH958987|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatgcaacagagtaagttgagcctcaatttgcatcatcaacca
aaatccacttaagtgtaagtctttctgtgtaagactcatagcgtagagtt
ggtgagatggtacggcacgtaaaaagtacttgcgcaagcctggttacccc
ggcggaaggagagaacttgtttcagaaagttgtccttggactgttagata
tggggccttcggatttaagacctgactttgagcccagagaaatatggctg
cctcccaagctccatgctggggcaggactgcaagcccagacaccactccc
tggaggaacctgtcaacaaatgcttttcccttagtgatggactgaagtga
acataaactaaaccctttcctccccagcttgcttttgatgatgatgtttg
tttaccacagcaatagggaccctaagactctgcatcccacacatcacatg
tatcactcctccccttcctattgatccccactccacccgcctgcccccat
agctcccccttgctcacttctgcaattactccaagctctgtactcacatt
ggaagatatggagctaagaaccccagaggagagagaacacgcaacgtttg
gctctctgggtctcagtttccccactctaccttatcttttctatgccatt
catttacctaccaggttcattgttatttttcctttacaggtgatttttct
tacacggtgtgcatatacatttttcttatccgtttatcagttggagaaaa
ttcacgtctcccttccccagctattgtaaatcagatcagcagtgaagacg
gctgagaaaagggttgaggagtagggtattgagggctttgggcgcattct
caggaatagcgtagctgggccacactgtagatgtagttttgagaattctc
cacactgacttccagagcagctggtccagtttgcagctccaccaacggta
aatacggtttcactttgcccacatcccctccagcatctgtcagtactttt
ctgttgctgtgataaaaactatgacgagcaccttagagagtttatttggc
tatggtgcaaggcgtgagagtctatgaatgagagcaacatgttgtcagag
caagagcttgaaggatgcatctttacaaccaggcataagacgaataagaa
ctgaatggtggaagcttaactccataggttccctcaagaacatacttcgt
tcactacagagtcttcctctgctccaacctctccgtgac
gaattctcattaatttattaatttgagatttctctaattttttatgtagg
ttctataaacttctgtcttacaactgcttcattgtgttccataggttttg
atgtgttgtattttcattttcattcaattctaggaatttctaaattttct
tcttggtttaatttttgatccaactagtatttagcatgtgtttgatttct
acaaattcatgtattttctgttgtttttgttactattgatatccagcttt
atttcattgtggccagatagaattcaggatattatttcaatttttccata
tttgttgaatattgctttgttccctaatatgtaatcaactttggagaatg
tttcatgggttgctgagaaaaataagctctttactgttgggttgaatgtt
ctgtagatatctgttaagccctttgatttatgatgtcatttacttctata
gtttctcttttagcttatttttagatgatcagtttgtaagagaggggtat
taaaataactcatgatcactctgctgggatacaatgtgatttgtattcaa
cagtgtttctttcatagaattgggagtctctgtgtttacttcatatgttt
tctgacttgttttcagtagaagttgatcttgtcagatattagaatagcta
cacttactgtttcttagttctatttgcttagaatacatttttctacccat
ttaccctaaggagatatttgtctttgttggttaggtgtattcctctgaga
cgacaaagaggcagatcctgttttctactccaatatgttagtctatatca
tcttactagcagaatagagaccattaatactcagtctttttaataaaaaa
tgtgtattaactcctgtctttttggttcatgacacctttcctttttcatc
agagtattaaagtgttcagatgggactaattccaagcaggctgtactgca
tttatccatttccctgatatctagggatacactgtctatcaggtcttctg
tttctcaaaagtcaaagaactttaacaatttctttggtaatatgcctgct
atgtcttttttcagcagtaagctggatttgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129556261_129556986
seq2: B6Ng01-167I04.g_444_1151

seq1  CTCTTTACTGTTGGGTTGAATGTTCTGTAGATATCTGTTAAGCCCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACTGTTGGGTTGAATGTTCTGTAGATATCTGTTAAGCCCTTTGA  50

seq1  TTTATGATGTCATTTACTTCTATAGTTTCTCTTTTAGCTTATTTTTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATGTCATTTACTTCTATAGTTTCTCTTTTAGCTTATTTTTAGAT  100

seq1  GATCAGTTTGTAAGAGAGGGGTATTAAAATAACTCATGATCACTCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTTGTAAGAGAGGGGTATTAAAATAACTCATGATCACTCTGCTG  150

seq1  GGATACAATGTGATTTGTATTCAACAGTGTTTCTTTCATAGAATTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAATGTGATTTGTATTCAACAGTGTTTCTTTCATAGAATTGGGAG  200

seq1  TCTCTGTGTTTACTTCATATGTTTTCTGACTTGTTTTCAGTAGAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTTACTTCATATGTTTTCTGACTTGTTTTCAGTAGAAGTTGA  250

seq1  TCTTGTCAGATATTAGAATAGCTACACTTACTGTTTCTTAGTTCTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGATATTAGAATAGCTACACTTACTGTTTCTTAGTTCTATTTG  300

seq1  CTTAGAATACATTTTTCTACCCATTTACCCTAAGGAGATATTTGTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATACATTTTTCTACCCATTTACCCTAAGGAGATATTTGTCTTTG  350

seq1  TTGGTTAGGTGTATTCCTCTGAGACGACAAAGAGGCAGATCCTGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGGTGTATTCCTCTGAGACGACAAAGAGGCAGATCCTGTTTTCT  400

seq1  ACTCCAATATGTTAGTCTATATCATCTTACTAGCAGAATAGAGACCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATATGTTAGTCTATATCATCTTACTAGCAGAATAGAGACCATTA  450

seq1  ATACTCAGTCTTTTTAATAAAAAATGTGTATTAACTCCTGTCTTTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGTCTTTTTAATAAAAAATGTGTATTAACTCCTGTCTTTTTGGT  500

seq1  TCATGACACCTTTCCTTTTTCATCAGAGGTATTAAAGTGTTCAGGATGGG  550
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TCATGACACCTTTCCTTTTTCATCAGA-GTATTAAAGTGTTCA-GATGGG  548

seq1  ACTAATTCCAAGCAGGGCTGTACTGCAATTTATCCATTTCCCTGATATCT  600
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  ACTAATTCCAAGCA-GGCTGTACTGC-ATTTATCCATTTCCCTGATATCT  596

seq1  AGGGATACACTGTCTATCCAGGTCTTCTGTTTCTCAAAAGGTCAAAGAAC  650
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AGGGATACACTGTCTAT-CAGGTCTTCTGTTTCTCAAAA-GTCAAAGAAC  644

seq1  CTTACACAAATTTCCTCTGGTAATATGCCCTGCTATGTCTTTTTTTCCCA  700
       ||| ||||  || || |||||||||| |||||||||||||||||   ||
seq2  TTTA-ACAA--TTTCTTTGGTAATATG-CCTGCTATGTCTTTTTT---CA  687

seq1  GCAAGTAAGGCTGGGATTTTGGAAAT  726
      || ||||| ||| ||||||  |||||
seq2  GC-AGTAA-GCT-GGATTT--GAAAT  708