BAC Information

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BAC

Clone NameB6Ng01-167M05
Chromosome2 (Build37)
Map Location 138,554,773 - 138,684,507
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167M05.bB6Ng01-167M05.g
ACCDH959173DH959174
length1,1881,107
definitionDH959173|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M05, 5' end.DH959174|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,554,773 - 138,555,985)(138,683,388 - 138,684,507)
sequence
gaattctttaaaagacatcaaatttgaaagactattagtattattatcac
ttatggatgatgagcatttgataaacttcctctgtttcaataatcagagt
atacagagtgtagcaaattggaacatcattgatctttcatttctctcttg
gaaatatactcagaaatgattaaatcaagactttacctatactgcaaaca
taaagatttaaaagattatgactgacagcagctccaaaatggaatcagag
atattatttcttgggaaattataaaactgtaatttatttatacataaaca
tagagtcaataataaaagtgacttactgatagtagtttatataaatcata
atacatcatgtacaataaaagaatccaggcatagaaaaacacatactata
ggatttcttttatacaaaactcaagaccagttagaatgatggttatagtc
aagtttaggaatatatacaaagaaagcacctggtggcttccttgaggtca
caaggaaatgtttctttctttctggatgcagttgccaggttgtacataca
ggtaaatgttacatgttagtgtacaatgaatcaatgtcactacactattc
ctcactggacacattagagaaaacatataaacctctcctgtatttgagtg
caggaagaccatttaaaagggaaaggaaggtgaaatctactttcttataa
tacgaacacgtatgttcaataatgattgcttgtatttcaaaagtaatctc
tattacacatagaaaatggactcttaccatccaaaggaacaaaaatgagg
cattgagaaaagcaatggaaaatataaggagcagtgagcaggataaaatc
aatactttgttgttttccttcactgagggcaagctaaattgtcctaagaa
aagtacagatgatggaattcacttacaaaatgcagtctttttgtttataa
catataaaagaccggggcagagtgctgctagcaccatgggcaaaaacata
tcagagcaaaagagcacacagactacgtgtaagtgcagaagatatttaga
gacatcaccccacacttatgtttactggaaaaaaggaatgtgggatatac
atgttaccagatctagagggtctagaaatacctcaatgcgaatgttttga
tgcttctgctttccgaattcggtactaaaatatctgta
gaattcctcacctatctgtatcctttgaagaaaagagaaaaagaagtgta
gatgggtatcttctattgtttctgtcctaaatcttcctttctgttggtgc
ttctgctagacaatcagagaactatgcaatcctttaaatttcagaaaacc
tggggaaagaactggaggcacaaatcagtaaagagtgtgtgaaggtccac
ttctaaaggttgttccatagtgtagtgcttcttttatggtgggaaaaaat
agactcattgaatggggatttgattttatttaaataaacatcgatttccc
cattcaattataatgttggcaggagcccacatcccacaacaaagtccata
tttaaatattttaagcacctcaatcatgcttaatggaatggaaaagccct
catacttctacagaaccatattcatctgcagcaagcagataacacatttg
cagctaaaagattatgtcaaatacaatcctatatttaggtgccctagcag
gtcaaagatgtacagataactgcttctacagctgacattccatcaaatct
tctctgttatagttagccagtcctgccacttatgatattcaaattctttt
ccaattctattccaaatgtaccaggctagactgaagttaggttctaacat
agttgtcatgtaaacacagacaacatgacttccgaatctattttccaaga
gtcccttgttgacagggagctcaaatagttttcttgaaaatataggagtg
aagcccttctccttcagtatctactaggcagtatatggtacagagaagta
gaaaaaagaattaatttcccaaagccaagttgaatgatgaggccactagt
gacatcacaccatagccatggaaggtacaatgatagcctgttagacacca
ctgttgaatctgaatggcaccaaatccccgagacacatatgaggttctag
agcaggattcactgaataataatatatagtaaatactgtggagctgagct
atggcttagcagttagagcacttcctactcttcagaagatagtctgttct
caacatgcatatttagccaaagataatgaattctctcctctgcctatgtg
gcaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138554773_138555985
seq2: B6Ng01-167M05.b_48_1235

seq1  GAATTCTTTAAAAGACATCAAATTTGAAAGACTATTAGTATTATTATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAGACATCAAATTTGAAAGACTATTAGTATTATTATCAC  50

seq1  TTATGGATGATGAGCATTTGATAAACTTCCTCTGTTTCAATAATCAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATGATGAGCATTTGATAAACTTCCTCTGTTTCAATAATCAGAGT  100

seq1  ATACAGAGTGTAGCAAATTGGAACATCATTGATCTTTCATTTCTCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTGTAGCAAATTGGAACATCATTGATCTTTCATTTCTCTCTTG  150

seq1  GAAATATACTCAGAAATGATTAAATCAAGACTTTACCTATACTGCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATACTCAGAAATGATTAAATCAAGACTTTACCTATACTGCAAACA  200

seq1  TAAAGATTTAAAAGATTATGACTGACAGCAGCTCCAAAATGGAATCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTTAAAAGATTATGACTGACAGCAGCTCCAAAATGGAATCAGAG  250

seq1  ATATTATTTCTTGGGAAATTATAAAACTGTAATTTATTTATACATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTCTTGGGAAATTATAAAACTGTAATTTATTTATACATAAACA  300

seq1  TAGAGTCAATAATAAAAGTGACTTACTGATAGTAGTTTATATAAATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCAATAATAAAAGTGACTTACTGATAGTAGTTTATATAAATCATA  350

seq1  ATACATCATGTACAATAAAAGAATCCAGGCATAGAAAAACACATACTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATGTACAATAAAAGAATCCAGGCATAGAAAAACACATACTATA  400

seq1  GGATTTCTTTTATACAAAACTCAAGACCAGTTAGAATGATGGTTATAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTTTATACAAAACTCAAGACCAGTTAGAATGATGGTTATAGTC  450

seq1  AAGTTTAGGAATATATACAAAGAAAGCACCTGGTGGCTTCCTTGAGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGGAATATATACAAAGAAAGCACCTGGTGGCTTCCTTGAGGTCA  500

seq1  CAAGGAAATGTTTCTTTCTTTCTGGATGCAGTTGCCAGGTTGTACATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATGTTTCTTTCTTTCTGGATGCAGTTGCCAGGTTGTACATACA  550

seq1  GGTAAATGTTACATGTTAGTGTACAATGAATCAATGTCACTACACTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGTTACATGTTAGTGTACAATGAATCAATGTCACTACACTATTC  600

seq1  CTCACTGGACACATTAGAGAAAACATATAAACCTCTCCTGTATTTGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGACACATTAGAGAAAACATATAAACCTCTCCTGTATTTGAGTG  650

seq1  CAGGAAGACCATTTAAAAGGGAAAGGAAGGTGAAATCTACTTTCTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACCATTTAAAAGGGAAAGGAAGGTGAAATCTACTTTCTTATAA  700

seq1  TACGAACACGTATGTTCAATAATGATTGCTTGTATTTCAAAAGTAATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACACGTATGTTCAATAATGATTGCTTGTATTTCAAAAGTAATCTC  750

seq1  TATTACACATAGAAAATGGACTCTTACCATCCAAAGGAACAAAAATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACATAGAAAATGGACTCTTACCATCCAAAGGAACAAAAATGAGG  800

seq1  CATTGAGAAAAGCAATGGAAAATATAAGGAGCAGTGAGCAGGATAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAAAAGCAATGGAAAATATAAGGAGCAGTGAGCAGGATAAAATC  850

seq1  AATACTTTGTTGTTTTCCTTCACTGAGGGCAAGCTAAATTGTCCTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTGTTGTTTTCCTTCACTGAGGGCAAGCTAAATTGTCCTAAGAA  900

seq1  AAGTACAGATGATGGAATTCACTTACAAAATGCAGTCTTTTTGTTTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGATGATGGAATTCACTTACAAAATGCAGTCTTTTTGTTTATAA  950

seq1  CATATAAAAGAACCGGGGCAGAAGTGCTGCTAGCAACCATGGGCAAAAAA  1000
      |||||||||| |||||||||| |||||||||||| ||||||||| |||||
seq2  CATATAAAAG-ACCGGGGCAG-AGTGCTGCTAGC-ACCATGGGC-AAAAA  996

seq1  CATATCAAGAGGCAAAAGAAGCACACAGACTACGTGTAAAGTGCAGAAGG  1050
      |||||| ||| ||||||| |||||||||||||||||| ||||||||||| 
seq2  CATATC-AGA-GCAAAAG-AGCACACAGACTACGTGT-AAGTGCAGAAG-  1041

seq1  AATAATTTAAGAAGAACCATCAACCCCACACTTATGTTTACTGGAAAAAA  1100
       ||| ||     |||  |||| ||||||||||||||||||||||  ||||
seq2  -ATATTT-----AGAGACATC-ACCCCACACTTATGTTTACTGG--AAAA  1082

seq1  AAGGAAATTGTGGATATACATGTACACAGATCTAGA-GGTCTAG-AATA-  1147
      ||||||  || ||||||||||||   |||||||||| ||||||| |||| 
seq2  AAGGAATGTG-GGATATACATGTTACCAGATCTAGAGGGTCTAGAAATAC  1131

seq1  CTCAATGCAGATATGTTTTTTGAATGCTTCTGCTTTCTGATTTCTGTATA  1197
      |||||||| || |||||||    |||||||||||||| || ||| |  ||
seq2  CTCAATGC-GA-ATGTTTT---GATGCTTCTGCTTTCCGAATTCGG--TA  1174

seq1  CTAAAATATATCTGTA  1213
      |||||  |||||||||
seq2  CTAAA--ATATCTGTA  1188

seq1: chr2_138683388_138684507
seq2: B6Ng01-167M05.g_68_1174 (reverse)

seq1  TGTTTGCCACAGTAGGCAGAGGAGAGAA-TCATATATCCTTTGGCTAAAT  49
      ||||||||||| |||||||||||||||| |||| ||| ||||||||||||
seq2  TGTTTGCCACA-TAGGCAGAGGAGAGAATTCAT-TAT-CTTTGGCTAAAT  47

seq1  ATGCATGTTGAGAACAGAACTAATTCCTCTGGAAGAGTAGGAAGTGCTCT  99
      ||||||||||||||||| ||||  || ||| |||||||||||||||||| 
seq2  ATGCATGTTGAGAACAG-ACTA--TCTTCT-GAAGAGTAGGAAGTGCTC-  92

seq1  TAACTGCTAAGCCATAGCTTCAGCTCCACAGTATTTTACTATTATTATTA  149
      |||||||||||||||||| |||||||||||||| ||||||||   |||||
seq2  TAACTGCTAAGCCATAGC-TCAGCTCCACAGTA-TTTACTAT--ATATTA  138

seq1  TTATTCAGTGAATTCCTGCTCTAGAACCTCATATGTGTCTCGGGGATTTG  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGTGAA-TCCTGCTCTAGAACCTCATATGTGTCTCGGGGATTTG  187

seq1  GTGGCCATTCAGATTCAACAGTGGTGTCTAACAGGCTATCATTGTACCTT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GCCATTCAGATTCAACAGTGGTGTCTAACAGGCTATCATTGTACCTT  236

seq1  CCATGGCTATGGTGTGATGTCACTAGTGGCCTCATCATTCAACTTGGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTATGGTGTGATGTCACTAGTGGCCTCATCATTCAACTTGGCTT  286

seq1  TGGGAAATTAATTCTTTTTTCTACTTCTCTGTACCATATACTGCCTAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTAATTCTTTTTTCTACTTCTCTGTACCATATACTGCCTAGTA  336

seq1  GATACTGAAGGAGAAGGGCTTCACTCCTATATTTTCAAGAAAACTATTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAGGAGAAGGGCTTCACTCCTATATTTTCAAGAAAACTATTTG  386

seq1  AGCTCCCTGTCAACAAGGGACTCTTGGAAAATAGATTCGGAAGTCATGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGTCAACAAGGGACTCTTGGAAAATAGATTCGGAAGTCATGTT  436

seq1  GTCTGTGTTTACATGACAACTATGTTAGAACCTAACTTCAGTCTAGCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTTTACATGACAACTATGTTAGAACCTAACTTCAGTCTAGCCTG  486

seq1  GTACATTTGGAATAGAATTGGAAAAGAATTTGAATATCATAAGTGGCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGGAATAGAATTGGAAAAGAATTTGAATATCATAAGTGGCAGG  536

seq1  ACTGGCTAACTATAACAGAGAAGATTTGATGGAATGTCAGCTGTAGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAACTATAACAGAGAAGATTTGATGGAATGTCAGCTGTAGAAGC  586

seq1  AGTTATCTGTACATCTTTGACCTGCTAGGGCACCTAAATATAGGATTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTGTACATCTTTGACCTGCTAGGGCACCTAAATATAGGATTGTA  636

seq1  TTTGACATAATCTTTTAGCTGCAAATGTGTTATCTGCTTGCTGCAGATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAATCTTTTAGCTGCAAATGTGTTATCTGCTTGCTGCAGATGA  686

seq1  ATATGGTTCTGTAGAAGTATGAGGGCTTTTCCATTCCATTAAGCATGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTCTGTAGAAGTATGAGGGCTTTTCCATTCCATTAAGCATGATT  736

seq1  GAGGTGCTTAAAATATTTAAATATGGACTTTGTTGTGGGATGTGGGCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTTAAAATATTTAAATATGGACTTTGTTGTGGGATGTGGGCTCC  786

seq1  TGCCAACATTATAATTGAATGGGGAAATCGATGTTTATTTAAATAAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACATTATAATTGAATGGGGAAATCGATGTTTATTTAAATAAAATC  836

seq1  AAATCCCCATTCAATGAGTCTATTTTTTCCCACCATAAAAGAAGCACTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCATTCAATGAGTCTATTTTTTCCCACCATAAAAGAAGCACTAC  886

seq1  ACTATGGAACAACCTTTAGAAGTGGACCTTCACACACTCTTTACTGATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAACAACCTTTAGAAGTGGACCTTCACACACTCTTTACTGATTT  936

seq1  GTGCCTCCAGTTCTTTCCCCAGGTTTTCTGAAATTTAAAGGATTGCATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCAGTTCTTTCCCCAGGTTTTCTGAAATTTAAAGGATTGCATAG  986

seq1  TTCTCTGATTGTCTAGCAGAAGCACCAACAGAAAGGAAGATTTAGGACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATTGTCTAGCAGAAGCACCAACAGAAAGGAAGATTTAGGACAG  1036

seq1  AAACAATAGAAGATACCCATCTACACTTCTTTTTCTCTTTTCTTCAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGAAGATACCCATCTACACTTCTTTTTCTCTTTTCTTCAAAGG  1086

seq1  ATACAGATAGGTGAGGAATTC  1120
      |||||||||||||||||||||
seq2  ATACAGATAGGTGAGGAATTC  1107