BAC Information

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BAC

Clone NameB6Ng01-168G13
Chromosome2 (Build37)12 (Build37)
Map Location 144,827,426 - 144,828,56522,594,552 - 22,594,832
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168G13.bB6Ng01-168G13.g
ACCDH959653DH959654
length1,138870
definitionDH959653|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G13, 5' end.DH959654|Mus musculus domesticus DNA, BAC clone: B6Ng01-168G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,827,426 - 144,828,565)(22,594,552 - 22,594,832)
sequence
gaattcaattgtcaggtagaaagtaacagccaagagtcactttacattgt
agtgtgggtgcaagtaaggactacctatccacagtactagatgtttccaa
agcaggatgagaacatcatcttccagcacccacaggtgctacctccatgg
acacctaagaagggacagagagcagccattacaggtgtcattcattacag
tagactctgtgccaagaaagtctctctggaaaaccactggaaccacacaa
gcattttatttatttatttatttatttatttatttgatattttctttata
tacatttcaaatgctatcccaaaagttccctataccctccctccgccctg
ctcccctacccacccactcccccttcttggccctggagtttccctgtact
ggatcatataaagtttgcaagacaaaggggcctctattcccaatgatggc
caactaggccatcttctgctacatatgcagctagagacatgagctccagg
ggtactgttcatattgttcatattgttgttccacctatagggttgcataa
ccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaacc
cttcagctccttgggtgttttctctagctgctctattgggggccctgtgt
tccattttatagatgactgtgagcatccacttctgtattttccaggcact
ggcacagcctcatacaaaacagctataacagggtcccttcagcaaaaatc
tatctggcatatgcaatagtgtctgggtttggtgactgattatgggatgg
atcctcaggtggggtagtctctggatagcccaccctttcgtcttagctct
aaactttgtctctgtaactcctttcatgggtattttgttccctaatgagt
ggaatgaagtatccacccattggttgtccctcttcttaattttcttgtgt
ttgcaaattgtatcttgggtgttctatgtttctgggctaatatccaccaa
tcagtgagtgcatatctaatgacttcttttgtgatgggttaccaagcatt
ttatttcttaacagagggatccattatagaggatggtttcagctaagaag
ccacataaagttattgacctgccctagttactgtcatt
gaattcttataatatcattaagaattaagacgacatctattcatctatat
agcatcagtataagacagtactactttgtagatctgcttaaaagggatgg
gctattacctgatgattgctatatatatatatatatatatatatatatat
atatatatacacacatatatatatatatatatatttaataataacaggaa
aagtatattaattctaaaatgaattctcttaggacttgcttatagagcaa
atttgtcatggattataatccaaagtagaccatctcaggaagatcacctg
ttagttactagctcgtcttgtgatggttcctgacacattttcattccatt
atagaaagcttttctgttctttatttctgtcttcaactttttaaaaattc
attagagagttgttcagtttccacgactttgtaagctttctgttgttaat
agctaacttcaatccatgatgattagatgggatatagggagttatttcaa
ttttcttgtatcatttgagacttactttgtgtccatgtgtgtggtcagtt
ttggagacagttccacgaggtgcagagaagaaggtatgttcctttgtgtt
tgggtaaaatatctgtttaggctcattttgtttataatgtctcttaactc
cagcatttgtctgtcaaatttttatctggaggacctgtctattggtgaga
atggggtactgaagtctcccactatcagtgtgtgagggtccatgtgtgat
ttaagctgtagtatatttcttttacaaacttacgcgctcttgtatttgag
gcacagatattaggaattgaaatgtcctctttggggaattttttcttaga
taagtatgtagagttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144827426_144828565
seq2: B6Ng01-168G13.b_44_1181 (reverse)

seq1  AATGACAGTAACTATGGCA-GTCATTAAACTTTATGTGGCTTCTTAGCTG  49
      |||||||||||||| |||| |||| | |||||||||||||||||||||||
seq2  AATGACAGTAACTAGGGCAGGTCAAT-AACTTTATGTGGCTTCTTAGCTG  49

seq1  TAACCATCCTCTATAATGGATCCCCTCTGTT-AGAAATAAAATGCTTGGT  98
       |||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAACCATCCTCTATAATGGAT-CCCTCTGTTAAGAAATAAAATGCTTGGT  98

seq1  AACCCAATCACAAAAGAAGTCATTAGATATGCACTCACTGATTGGTGGAT  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCC-ATCACAAAAGAAGTCATTAGATATGCACTCACTGATTGGTGGAT  147

seq1  ATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGCAAAACACAAGA  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTAGCCCAGAAACATAGAACACCCAAGATACAATTTGC-AAACACAAGA  196

seq1  AAATTAAGAAGAGGGACAACCAATGGGTGGATACTTCATTCCACTCATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGAAGAGGGACAACCAATGGGTGGATACTTCATTCCACTCATTA  246

seq1  GGGAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTAGAGCTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTAGAGCTAA  296

seq1  GACGAAAGGGTGGGCTATCCAGAGACTACCCCACCTGAGGATCCATCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAAGGGTGGGCTATCCAGAGACTACCCCACCTGAGGATCCATCCCA  346

seq1  TAATCAGTCACCAAACCCAGACACTATTGCATATGCCAGATAGATTTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTCACCAAACCCAGACACTATTGCATATGCCAGATAGATTTTTG  396

seq1  CTGAAGGGACCCTGTTATAGCTGTTTTGTATGAGGCTGTGCCAGTGCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGACCCTGTTATAGCTGTTTTGTATGAGGCTGTGCCAGTGCCTG  446

seq1  GAAAATACAGAAGTGGATGCTCACAGTCATCTATAAAATGGAACACAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGAAGTGGATGCTCACAGTCATCTATAAAATGGAACACAGGG  496

seq1  CCCCCAATAGAGCAGCTAGAGAAAACACCCAAGGAGCTGAAGGGTTAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATAGAGCAGCTAGAGAAAACACCCAAGGAGCTGAAGGGTTAGGG  546

seq1  TTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTATGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTATGCAA  596

seq1  CCCTATAGGTGGAACAACAATATGAACAATATGAACAGTACCCCTGGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGGTGGAACAACAATATGAACAATATGAACAGTACCCCTGGAGC  646

seq1  TCATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCAT  696

seq1  TGGGAATAGAGGCCCCTTTGTCTTGCAAACTTTATATGATCCAGTACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAGAGGCCCCTTTGTCTTGCAAACTTTATATGATCCAGTACAGG  746

seq1  GAAACTCCAGGGCCAAGAAGGGGGAGTGGGTGGGTAGGGGAGCAGGGCGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAGGGCCAAGAAGGGGGAGTGGGTGGGTAGGGGAGCAGGGCGG  796

seq1  AGGGAGGGTATAGGGAACTTTTGGGATAGCATTTGAAATGTATATAAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGTATAGGGAACTTTTGGGATAGCATTTGAAATGTATATAAAGA  846

seq1  AAATATCAAATAAATAAATAAATAAATAAATAAATAAAATGCTTGTGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAATAAATAAATAAATAAATAAATAAATAAAATGCTTGTGTGG  896

seq1  TTCCAGTGGTTTTCCAGAGAGACTTTCTTGGCACAGAGTCTACTGTAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGGTTTTCCAGAGAGACTTTCTTGGCACAGAGTCTACTGTAATG  946

seq1  AATGACACCTGTAATGGCTGCTCTCTGTCCCTTCTTAGGTGTCCATGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACCTGTAATGGCTGCTCTCTGTCCCTTCTTAGGTGTCCATGGAG  996

seq1  GTAGCACCTGTGGGTGCTGGAAGATGATGTTCTCATCCTGCTTTGGAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCTGTGGGTGCTGGAAGATGATGTTCTCATCCTGCTTTGGAAAC  1046

seq1  ATCTAGTACTGTGGATAGGTAGTCCTTACTTGCACCCACACTACAATGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTACTGTGGATAGGTAGTCCTTACTTGCACCCACACTACAATGTA  1096

seq1  AAGTGACTCTTGGCTGTTACTTTCTACCTGACAATTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCTTGGCTGTTACTTTCTACCTGACAATTGAATTC  1138

seq1: chr12_22594552_22594832
seq2: B6Ng01-168G13.g_101_241 (reverse)

seq1  TATATATATATATGTATATATATATATATATGTTATCTGGCAGAAAAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAGATACATCAAGCTAAACATATGGATAGACTTACAGATACATAGAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGGATAGATTTAAAAATATACATATATGTATATATATATATTTATAG  150
                         |||| |||||||| | ||||||||| |||| 
seq2  -------------------TATATATATATGTGTGTATATATATATATAT  31

seq1  ATATATAGATAATATATAGATTATATATATTTATTGATATATGG--ATAG  198
      ||||||| || |||||||   ||||||||   ||    ||  ||  ||||
seq2  ATATATATAT-ATATATA---TATATATAGCAAT---CATCAGGTAATAG  74

seq1  ATACATAGATGTATAGGTGTATAGATATATACATATAGATATATAGACAT  248
         |||   | |  ||      |||| || | |  |||   ||  | | |
seq2  -CCCATCCCTTTTAAG-----CAGATCTACA-AAGTAG---TACTGTCTT  114

seq1  ATAGATTAATAGGTGATATATAGATGAATAGAT  281
      ||      |  | || |||||||||||||||||
seq2  AT------ACTGATGCTATATAGATGAATAGAT  141