BAC Information

Click to search

BAC

Clone NameB6Ng01-168H10
Chromosome2 (Build37)
Map Location 114,786,531 - 114,921,704
singlet/doubletdoublet
Overlap genenone
Upstream geneGja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H10.bB6Ng01-168H10.g
ACCDH959695DH959696
length1,1861,084
definitionDH959695|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H10, 5' end.DH959696|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,920,507 - 114,921,704)(114,786,531 - 114,787,634)
sequence
gaattcagttcaggtctgctggcccaaatacaatgggctgaatagcaaag
ccttgagatttcttagatgcataatgttctcacaaatggcccatgctatg
ctaataaaactattgtgactaggggcttttgcagtagaaactgacagatg
aggcagagttaagtactttttcagacaggctactacagtaaatcattaag
gcacacaaacaatcatccttcatcagcctgcaatttgtttcatagcgatc
gcaaatcgaaaacaatgtaaacaaacaaatcgacaactaatgaacatccc
cccactgctcactggaaatagatctacaactttacaagaacactttatcc
aacacattgtcaactcattgtaaacacatctacaactcataaacaactca
ttacccaggatgttgtcacctcgttgcaattagagccgaatgctaactgt
actgtatattccccgcactgaatcagattatggtcctggaaagaaaaccg
aggagagccagttcaacagtgagaaggctcaccgccccccgccccgccac
ccccatcactatgactttaacaatcatctgaccaggctcgtatagaaatt
gtactgcattttaagcttttcctcaggtagcccacattttccactcacac
aggaaggcagcagtttctcaacacgagtctctttcatagaggaaaagaaa
atgtgtaaagtattccccaagcgatagtaaaactcacagcttttactgta
atggctttgtgtgaactgcgtttagcgtccttacctggtatataatcttt
tggttggggctggtgtttttttaatgctcggctggatgattatttttgga
aagcaaacttgaacttacaaatgtcaccacaattttcttgtaatgataac
tttacctaaggatttaagtgggttttattcggcaatctgatatacataat
cctcacagagaggctgcgagtctatgtgtgtgtgtgtgggtagcagacac
atgaagtgtacacaacacataagaaatctttcagcagcatttgacacatt
atacaaaaagtatatttatcaggagcaggtgcattttatagtatttaatc
ttattctggcacctcagccttctgtaaatctatgtgagatggaaggattg
attaaattttggcaattaaagattccgattccagat
gaattcctccgaagcccagactggctttcagctagagatcccccagcctc
agccttctgggtgtttggattataggcatgcaccactacatccagcaaaa
cagtgttgtcagccataaagcaaagcctttttgagaaagtccacactcaa
aaaaaaataagacttagaagattatgatctcccagttttatggatagcaa
acacttgcttgtgaagctagtgtttgctgacttcccattgaatagagcag
aaacagggaagaacttggaaagcattcactttccctatcttgtctttagt
tggtatttctctctctttatcgctctttcttctgaagtctgggaccatta
cttgtcttccagatgcacaggcttcagccttggcattatagctgctcctg
taaccaaccatgccctctccctcatctgtggcttgacttcctctgcatct
tacaagacaatcctccattgcctatacctctaatccttaaaccttgcagt
gcagtgatcaaaaaaccaaacctcctgctatctacctgtcttaggtactc
tttattgctgtgaggagacaccatgaccaatgaaagtaataaagtacagc
cttttgtttaaagcttcagtttcagaggatggcagttcatgccagatagg
cagacatgatattgtagtagctgagagcttacattctgatcaacagatgg
ggagagaaagagagagagagagagagagagagagagagagagagagagag
agagagagagagagagagaaggtctaacttagggttttgaaatttcaaag
ccaccctcagggcacactttcatctaagaaggtcacagctcttaaaccct
ctcccaacagttctaattactgtggaccatacatcaaacatgagcctttg
aggccattattctttcataccaccacagaattaatagagtattatggatc
tcatgtattagcatgttctcttggaaatttttccaaaactgggagaatgc
ctgtataagtctagccccagctagaataccaagaaaatagcagagctaaa
ttcaatacttataaggccatcttaatagtatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114920507_114921704
seq2: B6Ng01-168H10.b_46_1231 (reverse)

seq1  ATCTGGAA----AATCTTTTAATTTTACAAAATTATAATTCAAATCCTTC  46
      ||||||||    |||||||  | ||  ||||||| ||||   ||||||||
seq2  ATCTGGAATCGGAATCTTT--AATTGCCAAAATT-TAAT--CAATCCTTC  45

seq1  CATCTTCCACATAGATTTACCAAGAAAGCTGAAGTTTGGCCAGAATTAGG  96
      |||||  |||||||||||||  |||| ||||| ||   |||||||| || 
seq2  CATCT--CACATAGATTTAC--AGAAGGCTGAGGT---GCCAGAATAAG-  87

seq1  AATTAAATTACTATAAAATGGCACCCTGCT-CTGATAAATATACTTTTTG  145
       |||||| ||||||||||| ||| |||||| |||||||||||||||||||
seq2  -ATTAAA-TACTATAAAAT-GCA-CCTGCTCCTGATAAATATACTTTTTG  133

seq1  TATAATGTGTCAAATGCTGCTGAAAGATTTCTTTATGTGTTGTGTACACT  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAATGTGTCAAATGCTGCTGAAAGATTTC-TTATGTGTTGTGTACACT  182

seq1  TCATGTGTCTGCTACCCACACACACACACATAGACTCGCAGCCTCTCTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTCTGCTACCCACACACACACACATAGACTCGCAGCCTCTCTGT  232

seq1  GAGGATTATGTATATCAGATTGCCGAAT-AAACCCACTTAAATCCTTAGG  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGATTATGTATATCAGATTGCCGAATAAAACCCACTTAAATCCTTAGG  282

seq1  TAAAGTTATCATTACAAGAAAATTGTGGTGACATTTGTAAGTTCAAGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATCATTACAAGAAAATTGTGGTGACATTTGTAAGTTCAAGTTT  332

seq1  GCTTTCCAAAAATAATCATCCAGCCGAGCATTAAAAAAACACCAGCCCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAAAAATAATCATCCAGCCGAGCATTAAAAAAACACCAGCCCCA  382

seq1  ACCAAAAGATTATATACCAGGTAAGGACGCTAAACGCAGTTCACACAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGATTATATACCAGGTAAGGACGCTAAACGCAGTTCACACAAAG  432

seq1  CCATTACAGTAAAAGCTGTGAGTTTTACTATCGCTTGGGGAATACTTTAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGTAAAAGCTGTGAGTTTTACTATCGCTTGGGGAATACTTTAC  482

seq1  ACATTTTCTTTTCCTCTATGAAAGAGACTCGTGTTGAGAAACTGCTGCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTTTCCTCTATGAAAGAGACTCGTGTTGAGAAACTGCTGCCT  532

seq1  TCCTGTGTGAGTGGAAAATGTGGGCTACCTGAGGAAAAGCTTAAAATGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGAGTGGAAAATGTGGGCTACCTGAGGAAAAGCTTAAAATGCA  582

seq1  GTACAATTTCTATACGAGCCTGGTCAGATGATTGTTAAAGTCATAGTGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTTCTATACGAGCCTGGTCAGATGATTGTTAAAGTCATAGTGAT  632

seq1  GGGGGTGGCGGGGCGGGGGGCGGTGAGCCTTCTCACTGTTGAACTGGCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGCGGGGCGGGGGGCGGTGAGCCTTCTCACTGTTGAACTGGCTC  682

seq1  TCCTCGGTTTTCTTTCCAGGACCATAATCTGATTCAGTGCGGGGAATATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGGTTTTCTTTCCAGGACCATAATCTGATTCAGTGCGGGGAATATA  732

seq1  CAGTACAGTTAGCATTCGGCTCTAATTGCAACGAGGTGACAACATCCTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGTTAGCATTCGGCTCTAATTGCAACGAGGTGACAACATCCTGG  782

seq1  GTAATGAGTTGTTTATGAGTTGTAGATGTGTTTACAATGAGTTGACAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGTTGTTTATGAGTTGTAGATGTGTTTACAATGAGTTGACAATG  832

seq1  TGTTGGATAAAGTGTTCTTGTAAAGTTGTAGATCTATTTCCAGTGAGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATAAAGTGTTCTTGTAAAGTTGTAGATCTATTTCCAGTGAGCAG  882

seq1  TGGGGGGATGTTCATTAGTTGTCGATTTGTTTGTTTACATTGTTTTCGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGATGTTCATTAGTTGTCGATTTGTTTGTTTACATTGTTTTCGAT  932

seq1  TTGCGATCGCTATGAAACAAATTGCAGGCTGATGAAGGATGATTGTTTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGATCGCTATGAAACAAATTGCAGGCTGATGAAGGATGATTGTTTGT  982

seq1  GTGCCTTAATGATTTACTGTAGTAGCCTGTCTGAAAAAGTACTTAACTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTAATGATTTACTGTAGTAGCCTGTCTGAAAAAGTACTTAACTCT  1032

seq1  GCCTCATCTGTCAGTTTCTACTGCAAAAGCCCCTAGTCACAATAGTTTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCTGTCAGTTTCTACTGCAAAAGCCCCTAGTCACAATAGTTTTA  1082

seq1  TTAGCATAGCATGGGCCATTTGTGAGAACATTATGCATCTAAGAAATCTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGCATGGGCCATTTGTGAGAACATTATGCATCTAAGAAATCTC  1132

seq1  AAGGCTTTGCTATTCAGCCCATTGTATTTGGGCCAGCAGACCTGAACTGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTGCTATTCAGCCCATTGTATTTGGGCCAGCAGACCTGAACTGA  1182

seq1  ATTC  1198
      ||||
seq2  ATTC  1186

seq1: chr2_114786531_114787634
seq2: B6Ng01-168H10.g_67_1150

seq1  GAATTCCTCCGAAGCCCAGACTGGCTTTCAGCTAGAGATCCCCCAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCGAAGCCCAGACTGGCTTTCAGCTAGAGATCCCCCAGCCTC  50

seq1  AGCCTTCTGGGTGTTTGGATTATAGGCATGCACCACTACATCCAGCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGGGTGTTTGGATTATAGGCATGCACCACTACATCCAGCAAAA  100

seq1  CAGTGTTGTCAGCCATAAAGCAAAGCCTTTTTGAGAAAGTCCACACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTCAGCCATAAAGCAAAGCCTTTTTGAGAAAGTCCACACTCAA  150

seq1  AAAAAAATAAGACTTAGAAGATTATGATCTCCCAGTTTTATGGATAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAAGACTTAGAAGATTATGATCTCCCAGTTTTATGGATAGCAA  200

seq1  ACACTTGCTTGTGAAGCTAGTGTTTGCTGACTTCCCATTGAATAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCTTGTGAAGCTAGTGTTTGCTGACTTCCCATTGAATAGAGCAG  250

seq1  AAACAGGGAAGAACTTGGAAAGCATTCACTTTCCCTATCTTGTCTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGAAGAACTTGGAAAGCATTCACTTTCCCTATCTTGTCTTTAGT  300

seq1  TGGTATTTCTCTCTCTTTATCGCTCTTTCTTCTGAAGTCTGGGACCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTCTCTCTCTTTATCGCTCTTTCTTCTGAAGTCTGGGACCATTA  350

seq1  CTTGTCTTCCAGATGCACAGGCTTCAGCCTTGGCATTATAGCTGCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCCAGATGCACAGGCTTCAGCCTTGGCATTATAGCTGCTCCTG  400

seq1  TAACCAACCATGCCCTCTCCCTCATCTGTGGCTTGACTTCCTCTGCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACCATGCCCTCTCCCTCATCTGTGGCTTGACTTCCTCTGCATCT  450

seq1  TACAAGACAATCCTCCATTGCCTATACCTCTAATCCTTAAACCTTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACAATCCTCCATTGCCTATACCTCTAATCCTTAAACCTTGCAGT  500

seq1  GCAGTGATCAAAAAACCAAACCTCCTGCTATCTACCTGTCTTAGGTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATCAAAAAACCAAACCTCCTGCTATCTACCTGTCTTAGGTACTC  550

seq1  TTTATTGCTGTGAGGAGACACCATGACCAATGAAAGTAATAAAGTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTGTGAGGAGACACCATGACCAATGAAAGTAATAAAGTACAGC  600

seq1  CTTTTGTTTAAAGCTTCAGTTTCAGAGGATGGCAGTTCATGCCAGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTAAAGCTTCAGTTTCAGAGGATGGCAGTTCATGCCAGATAGG  650

seq1  CAGACATGATATTGTAGTAGCTGAGAGCTTACATTCTGATCAACAGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGATATTGTAGTAGCTGAGAGCTTACATTCTGATCAACAGATGG  700

seq1  GGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  750
      ||||||||    ||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAA----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  746

seq1  AGAGAGAGAGAGAGAGAGAGAGAAGGTCTAACTTAGGGTTTTGAAATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAAGGTCTAACTTAGGGTTTTGAAATTTC  796

seq1  AAAGGCCACCCTCAGTGGCACAC-TTCATCTAAGAAGGTCACAGCTCTTA  849
      ||| ||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AAA-GCCACCCTCAG-GGCACACTTTCATCTAAGAAGGTCACAGCTCTTA  844

seq1  AACCC-CTCCCAAACAGTTCTATTTACTGTGGACCAAACAATCAAACATG  898
      ||||| ||||| |||||||||| ||||||||||||| || ||||||||||
seq2  AACCCTCTCCC-AACAGTTCTAATTACTGTGGACCATAC-ATCAAACATG  892

seq1  AGCCTATAGAGGCCATTA-TCATTCAGACCACCACAGAACTTAATAGAGT  947
      ||||| | |||||||||| || |||| |||||||||||| ||||||||||
seq2  AGCCT-TTGAGGCCATTATTCTTTCATACCACCACAGAA-TTAATAGAGT  940

seq1  ATTATGGATCTTAATGAAATTAAGCATGTTCTTCTGGAAATATTTCCAGA  997
      |||||||||| | ||| |  | ||||||||||  ||||||| |||||| |
seq2  ATTATGGATC-TCATGTA--TTAGCATGTTCTCTTGGAAATTTTTCCAAA  987

seq1  ACTGGAGGAGTGCCTGGTAGAAGTTCTAGCCCCAGCTAAGAATACCAAGG  1047
      |||||  || ||||| ||| ||| ||||||||||||| ||||||||||| 
seq2  ACTGGGAGAATGCCT-GTATAAG-TCTAGCCCCAGCT-AGAATACCAAGA  1034

seq1  AAATAGGCAGAGGCTAAATTCACTTACCTATAATGGCCATCTCTGAATAG  1097
      ||||| ||||| ||||||||||  ||| ||||| |||||  ||| |||||
seq2  AAATA-GCAGA-GCTAAATTCA-ATACTTATAA-GGCCA--TCTTAATAG  1078

seq1  TAATATT  1104
      | |||||
seq2  T-ATATT  1084