BAC Information

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BAC

Clone NameB6Ng01-168I04
Chromosome2 (Build37)
Map Location 157,195,125 - 157,356,118
singlet/doubletdoublet
Overlap geneManbal, Src
Upstream geneLOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678
Downstream geneBlcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168I04.bB6Ng01-168I04.g
ACCDH959731DH959732
length1,0641,124
definitionDH959731|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I04, 5' end.DH959732|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,355,041 - 157,356,118)(157,195,125 - 157,196,254)
sequence
gaattccaataagacagggatggaaaaacacccactggaggtggtaatta
gggggttatcggagcccgcagcaagagtggtttttggggtgtgatggagc
agaagcctgccagcggcgctgcctggggatgacagatagtcagcagcaag
gcagccctgtgcagaagtttagataattaagttcagataattagaaaagt
ttagggcaggattgtctcagagctggagagcgacttgtgaagccaagagg
aagttttcagctcaattctatgcatgatctttgagcctttccagggccta
tggggagaccatgggaagaaaacagatctctgtcctcgtggggtttctaa
tccagaaggagagacagaccctgggtaaattgtcagaacaaatggcgatc
atgaacaggggaaggagtctgctgaggtttccctgggtgctgctgagaga
tgaaggtggtgcgcaggcgaggagggttcggggcagcatgggtcatctag
ctcagaaggtttgcagctttgtcccaaagcacgatgatgacatgtcctga
ctcatgagttgaaactctccctctggcttctggtgaggagatcaccgtgg
gagcagaggtcagcagggagggaggtcttccagtggacaacctgctgtcc
atcacccagacctggcgcatgaacatgagagaaggaacagaaaaaaaagg
ctggggcacctgtgggagctcggggctttggaatggatgaggtgggaagg
accagttgctagaggaagtcccctggcatccactggccagtgctgtggtt
ccacatgaagagagaccttgactggggacaaagagttgttggttgaattt
attgagtatgagaggactttgggacttgtagcttaggggccaggagggaa
gactcaggtagagacagaaggcttcagagatgtcacagtgagacagcagg
tggcattaagaagtgcaatatgcagcggcgttgtggcacacactttaatc
cagcactcagagcagagcaggcagatttctgagttcgaggcagctgtcta
caagtgagttccag
gaattcagcatacagaccagactggtttagaactcaaagagatctgtctg
tctccctagtgttgggatagaaactgtattctgtcccaagcaactgcagc
gtcttcttgaaaggttttattaactgaagtttttagggtaaaagacttgg
ctctgacagtgccaacgagctagatttggctactgattgctaatatttta
gttaatgagataactagcagtgaagatcagaaaagagatgtattcggtgt
gcccgcattggaaaaaggaacaaataataggatcctctggcttccaagtc
cctccccaagattctgtcatggagtttaggcttgaatagaggtggaggta
tgcatagctaagcaggtctggcaggatgaggtcctgcctgtcattgatcc
acactggtcctccttccagtctgcccagcaaggtggtctgatactttgta
aaaactgtatgaaatctttctacacttgcatagaaagtgacttgcataag
ggcttcatcctttctctttccccaggagtctttgattctagcactaggga
agcagaggcagagggaactctgggagtccaaggccttagaggtctacatg
tcttgtttcatagtgagactctgtcacaaacaaacagaatatctcctttt
ctagtgttggtgggtgggtacaggaacttttttttgtttttttgtttgtt
tgtttgtttgttttgtttttttggtttttcgagacagggtttctctgtgt
agccctggctgtcctgggactcactctgtagaccaggctgggctcaaact
cagaaattttcctgcctctgcctcccaagtgctgggattaaaggcgtgca
ctaccacgtccggctcaggaacttttttttttaattccttagctgtacag
attccccaaaccactattcccctcttgccctgacacccagccgccccaaa
cataactgtggcttgaatgccccttcacaacacccctgtcatgtatgtca
agaatgtccaaggcagcctattggatgcatccaaattccacaccgtcagt
catcaaggcagcactatgcttccactcagccaaccgaatgagtttgatca
ggactagactgcattcctttatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_157355041_157356118
seq2: B6Ng01-168I04.b_43_1106 (reverse)

seq1  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCT  50
      ||||||||||| ||||||||   ||| |||||||||||||||||||||||
seq2  CTGGAACTCAC-TTGTAGAC--AGCT-GCCTCGAACTCAGAAATCTGCCT  46

seq1  GCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACAACGCCCGG  100
      | ||||||   ||||||||| |||||||| |||||||||||||||||  |
seq2  G-CTCTGC--TCTGAGTGCT-GGATTAAA-GTGTGTGCCACAACGCC--G  89

seq1  CTGCATATTGCACTTCTTAATGCCACCCTGCCTGTCTCACTGTGACCTTC  150
      ||||||||||||||||||||||||| |||| |||||||||||||| | ||
seq2  CTGCATATTGCACTTCTTAATGCCA-CCTG-CTGTCTCACTGTGA-CATC  136

seq1  TCTGAAGCCTTCTGTCTCTACCTGAGTCTTCCCTCCTGGCCCCTAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCTTCTGTCTCTACCTGAGTCTTCCCTCCTGGCCCCTAAGCTA  186

seq1  CAAGTCCCAAAGTCCTCTCATACTCAATAAATTCAACCAACAACTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCAAAGTCCTCTCATACTCAATAAATTCAACCAACAACTCTTTG  236

seq1  TCCCCAGTCAAGGTCTCTCTTCATGTGGAACCACAGCACTGGCCAGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTCAAGGTCTCTCTTCATGTGGAACCACAGCACTGGCCAGTGGA  286

seq1  TGCCAGGGGACTTCCTCTAGCAACTGGTCCTTCCCACCTCATCCATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGGACTTCCTCTAGCAACTGGTCCTTCCCACCTCATCCATTCCA  336

seq1  AAGCCCCGAGCTCCCACAGGTGCCCCAGCCTTTTTTTTCTGTTCCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCGAGCTCCCACAGGTGCCCCAGCCTTTTTTTTCTGTTCCTTCTC  386

seq1  TCATGTTCATGCGCCAGGTCTGGGTGATGGACAGCAGGTTGTCCACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCATGCGCCAGGTCTGGGTGATGGACAGCAGGTTGTCCACTGGA  436

seq1  AGACCTCCCTCCCTGCTGACCTCTGCTCCCACGGTGATCTCCTCACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCCTCCCTGCTGACCTCTGCTCCCACGGTGATCTCCTCACCAGA  486

seq1  AGCCAGAGGGAGAGTTTCAACTCATGAGTCAGGACATGTCATCATCGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGGAGAGTTTCAACTCATGAGTCAGGACATGTCATCATCGTGC  536

seq1  TTTGGGACAAAGCTGCAAACCTTCTGAGCTAGATGACCCATGCTGCCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACAAAGCTGCAAACCTTCTGAGCTAGATGACCCATGCTGCCCCG  586

seq1  AACCCTCCTCGCCTGCGCACCACCTTCATCTCTCAGCAGCACCCAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTCGCCTGCGCACCACCTTCATCTCTCAGCAGCACCCAGGGAA  636

seq1  ACCTCAGCAGACTCCTTCCCCTGTTCATGATCGCCATTTGTTCTGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCAGACTCCTTCCCCTGTTCATGATCGCCATTTGTTCTGACAAT  686

seq1  TTACCCAGGGTCTGTCTCTCCTTCTGGATTAGAAACCCCACGAGGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGGGTCTGTCTCTCCTTCTGGATTAGAAACCCCACGAGGACAGA  736

seq1  GATCTGTTTTCTTCCCATGGTCTCCCCATAGGCCCTGGAAAGGCTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTTCTTCCCATGGTCTCCCCATAGGCCCTGGAAAGGCTCAAAG  786

seq1  ATCATGCATAGAATTGAGCTGAAAACTTCCTCTTGGCTTCACAAGTCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCATAGAATTGAGCTGAAAACTTCCTCTTGGCTTCACAAGTCGCT  836

seq1  CTCCAGCTCTGAGACAATCCTGCCCTAAACTTTTCTAATTATCTGAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCTGAGACAATCCTGCCCTAAACTTTTCTAATTATCTGAACTT  886

seq1  AATTATCTAAACTTCTGCACAGGGCTGCCTTGCTGCTGACTATCTGTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTAAACTTCTGCACAGGGCTGCCTTGCTGCTGACTATCTGTCAT  936

seq1  CCCCAGGCAGCGCCGCTGGCAGGCTTCTGCTCCATCACACCCCAAAAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCAGCGCCGCTGGCAGGCTTCTGCTCCATCACACCCCAAAAACC  986

seq1  ACTCTTGCTGCGGGCTCCGATAACCCCCTAATTACCACCTCCAGTGGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCTGCGGGCTCCGATAACCCCCTAATTACCACCTCCAGTGGGTG  1036

seq1  TTTTTCCATCCCTGTCTTATTGGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  TTTTTCCATCCCTGTCTTATTGGAATTC  1064

seq1: chr2_157195125_157196254
seq2: B6Ng01-168I04.g_70_1193

seq1  GAATTCAGCATACAGACCAGACTGGTTTAGAACTCAAAGAGATCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATACAGACCAGACTGGTTTAGAACTCAAAGAGATCTGTCTG  50

seq1  TCTCCCTAGTGTTGGGATAGAAACTGTATTCTGTCCCAAGCAACTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAGTGTTGGGATAGAAACTGTATTCTGTCCCAAGCAACTGCAGC  100

seq1  GTCTTCTTGAAAGGTTTTATTAACTGAAGTTTTTAGGGTAAAAGACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGAAAGGTTTTATTAACTGAAGTTTTTAGGGTAAAAGACTTGG  150

seq1  CTCTGACAGTGCCAACGAGCTAGATTTGGCTACTGATTGCTAATATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAGTGCCAACGAGCTAGATTTGGCTACTGATTGCTAATATTTTA  200

seq1  GTTAATGAGATAACTAGCAGTGAAGATCAGAAAAGAGATGTATTCGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAGATAACTAGCAGTGAAGATCAGAAAAGAGATGTATTCGGTGT  250

seq1  GCCCGCATTGGAAAAAGGAACAAATAATAGGATCCTCTGGCTTCCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCATTGGAAAAAGGAACAAATAATAGGATCCTCTGGCTTCCAAGTC  300

seq1  CCTCCCCAAGATTCTGTCATGGAGTTTAGGCTTGAATAGAGGTGGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAAGATTCTGTCATGGAGTTTAGGCTTGAATAGAGGTGGAGGTA  350

seq1  TGCATAGCTAAGCAGGTCTGGCAGGATGAGGTCCTGCCTGTCATTGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGCTAAGCAGGTCTGGCAGGATGAGGTCCTGCCTGTCATTGATCC  400

seq1  ACACTGGTCCTCCTTCCAGTCTGCCCAGCAAGGTGGTCTGATACTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTCCTCCTTCCAGTCTGCCCAGCAAGGTGGTCTGATACTTTGTA  450

seq1  AAAACTGTATGAAATCTTTCTACACTTGCATAGAAAGTGACTTGCATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTATGAAATCTTTCTACACTTGCATAGAAAGTGACTTGCATAAG  500

seq1  GGCTTCATCCTTTCTCTTTCCCCAGGAGTCTTTGATTCTAGCACTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATCCTTTCTCTTTCCCCAGGAGTCTTTGATTCTAGCACTAGGGA  550

seq1  AGCAGAGGCAGAGGGAACTCTGGGAGTCCAAGGCCTTAGAGGTCTACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAGAGGGAACTCTGGGAGTCCAAGGCCTTAGAGGTCTACATG  600

seq1  TCTTGTTTCATAGTGAGACTCTGTCACAAACAAACAGAATATCTCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCATAGTGAGACTCTGTCACAAACAAACAGAATATCTCCTTTT  650

seq1  CTAGTGTTGGTGGGTGGGTACAGGAACTTTTTTTTGTTTTTTTGTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTGGTGGGTGGGTACAGGAACTTTTTTTTGTTTTTTTGTTTGTT  700

seq1  TGTTTGTTTGTTTTGTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTGTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  750

seq1  AGCCCTGGCTGTCCTGGGACTCACTCTGTAGACCAGGCTGGGCTCAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGGACTCACTCTGTAGACCAGGCTGGGCTCAAACT  800

seq1  CAGAAATTTTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA  850

seq1  CTACCACGTCCGGCTCAGGAACTTTTTTTTTTAAGTCCTTAGCTGTTACA  900
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CTACCACGTCCGGCTCAGGAACTTTTTTTTTTAATTCCTTAGCTG-TACA  899

seq1  GATTCCCCAAACCACTATTCCCCTCTGCCCCTGACACCCAGCCGCCCCCA  950
      ||||||||||||||||||||||||||  |||||||||||||||||||| |
seq2  GATTCCCCAAACCACTATTCCCCTCTTGCCCTGACACCCAGCCGCCCCAA  949

seq1  ACATAACTGTGGCTTGAATGCCCC-TCACACACACCCCTGTCATGTATTG  999
      |||||||||||||||||||||||| ||||| |||||||||||||||| ||
seq2  ACATAACTGTGGCTTGAATGCCCCTTCACA-ACACCCCTGTCATGTA-TG  997

seq1  TC-AGAAGGTCCAAGGCAGCCTATT-GATGCATCACAAATTCCACA-CGT  1046
      || |||| ||||||||||||||||| |||||||| ||||||||||| |||
seq2  TCAAGAATGTCCAAGGCAGCCTATTGGATGCATC-CAAATTCCACACCGT  1046

seq1  CAGTTCATC-AGGCAGGCACTATGGCTTCCACTCAGCACAACCGGATGAG  1095
      ||| ||||| ||||| ||||||| ||||||||||||| |||||| |||||
seq2  CAG-TCATCAAGGCA-GCACTAT-GCTTCCACTCAGC-CAACCGAATGAG  1092

seq1  TTTGATTCCAGGGACCTAGACTGTA-TCCTTTATCA  1130
      ||||||  ||||   |||||||| | ||||||||||
seq2  TTTGAT--CAGG--ACTAGACTGCATTCCTTTATCA  1124