BAC Information

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BAC

Clone NameB6Ng01-168J15
Chromosome2 (Build37)
Map Location 91,151,871 - 91,313,736
singlet/doubletdoublet
Overlap gene1110051M20Rik, Lrp4
Upstream geneLOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289
Downstream geneLOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J15.bB6Ng01-168J15.g
ACCDH959797DH959798
length1,2221,086
definitionDH959797|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J15, 5' end.DH959798|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,312,498 - 91,313,736)(91,151,871 - 91,152,961)
sequence
tcctcctcacactcccggggggctgtggtcacagatgagtcaggcgcagt
gctgctccgaagagcactttgcctccaagcccctcaataaagccttctag
ggcagtcaacagtcccaatgctgaccccagcactcctggggaggtgctca
cctcttgtgggcttacctcgtcaagagatgaggggtaaaggacagaaaag
agctgaagacccgagagctcaaatagacccgggggcatcattttctgact
gaaaacccttacccgacagagcccgtggaatttgcctggcccttcccaac
actcacgacagtcctgctcatcacagtcatcttcacagtcattgtccccg
tcacacacccaggagcgtcggatgcacttgccgttgtcacagtggaagtc
cagaggggagcaggtaggcagcgctgggtccaagagaagggaaaggtcac
gccggcaggctacactgggccagatatccttgctccaaatcctattgtcc
tcattcccatccttggtcccctggtagatagagcacccaacaaactgcag
ctgggaagagggatcggctgaagggaattggggggcagcaagaacccccc
aagtctaagacacccgaggaagcagtaagagaaacttgggcaggagagaa
tagagggactatggttgtaactcagcttggtagaacattgcctaaacgta
tcacgtcctgggtttgatcaccagcacctcataaaactatgtgtggaggc
aaacacatgtcactctggcacttgggaggtaggggcaggaagatgggaag
ttcaaggtcatcgtcagtcacatattaagcttgaggccagtcaggactgt
atgagacctgcctcgagagatcctaggacggacagacttccctcctatcc
ttttattcaacgtagagtgacatatctaggtttccttctagtaatcatta
ctctgatgtcatctgcctcctgagcagcagtttctttctcactcaatgag
ataattgctcgcgactcacagaggccttttagatctgcttattaaactgc
tacatgaagggaagcatttattattagcaaatcagctgagctgagttaag
gataatgaggtcaggtggtagctctcgtccgttggactatgagttcactt
agaacattagtcctgcggccagagatgtaactgaattggcacttggctac
acgtgcgatttatatatatcca
gaattctgatgaggatctctagtcataagagctattctggaggggctggc
gagatggctcagtggttaaaagcgccggctgctcttctatatgtcccaag
tacaaatcccagcaaccacatggcggctcaaaccatccgtaacgaaatct
gatgccctgttctggagtgtctgaagacagctaccgtgtacttacatata
ataaataaataaatcttaaaaaaaaaaaaactattctggaaatgggtatt
tgagggaatccaggagctgcaaataactgaaaatggtaaccgtcctattt
ggtagacattacaactgtcaatagacgataaaccacagctagtggaccat
ggtgcagacgctgctggtctcccaaaatcttctcaccgagggagggctca
attcaatccccctgaatgcttttgtacaggaatgaatggccacttttacc
atgaaaaccaaaggaagctgaggggttgcctcacagaaatgtatttcgcc
ataagcagattcagtgtgagcactagctcaaggtgaggggcacccaggtg
caaaataatcctcctgttggttaacttactcatatcctaaagaccggtac
acaaggttattttagataagaaaatcaatttagcagaaatgattgatact
cctggtactcaagaactaacctggcctcttttgtcggaaaaggaagagag
ggaagaaaagcttttttttttacaactggcctgcctttttgctgtggaaa
ttcctgcctcctaagctctgtggacgcagcttactcatttctacatccgc
tttgcagaccacctgtgtgtccccgcattttatcgccagagctgtggtgg
ttgtgattgtactccacgcctgggagatggcgccggggccgagtcacaca
tccatcaccacatagcagctaaaggtaccaacaaatgacggtgggtacat
gttgcctgctctcatgagctgccctgaactaggacttttattcctcaact
aatgggaaacgaccagtacgatttagtctgaacacttctggttgaatcgc
cctagtagtcagctgtatagctgggctgatcagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91312498_91313736
seq2: B6Ng01-168J15.b_52_1273 (reverse)

seq1  TGGATATATATAAATCTCACTGTTAAGCCAATTGTCTGGATTTAAGGGTA  50
      |||||||||||||||| ||| ||  |||||| || |   | || | | ||
seq2  TGGATATATATAAATCGCAC-GTGTAGCCAAGTGCC---AATTCA-GTTA  45

seq1  CATGTCTGGCCCGCAGCATCTATGTCTGATGGTAACTAATTAGTCTAATG  100
      ||| ||||| |||||| |   ||||   | |  |||| | ||||| || |
seq2  CATCTCTGG-CCGCAGGACTAATGTTCTAAGTGAACTCA-TAGTCCAACG  93

seq1  GGAACGA-AGCTACAACCTGGACCTCATTAACCCTAAC-CAGCTCAGCTA  148
      |  |||| |||||| |||| |||||||||| || |||| |||||||||| 
seq2  G--ACGAGAGCTACCACCT-GACCTCATTATCCTTAACTCAGCTCAGCTG  140

seq1  ATTATGATAATAATAAATGCTTCCCTTTCATGTAGCACTTTCATATGCAT  198
      ||| || |||||||||||||||||| ||||||||||| ||| ||| ||| 
seq2  ATT-TGCTAATAATAAATGCTTCCC-TTCATGTAGCAGTTTAATAAGCA-  187

seq1  TATCTCAAAAGACCTCTTGTGAGTTGAGTGCAATTATCCCCTTGTGTAGT  248
       |||| ||||| |||| ||||||| | | ||||||||| | ||| || | 
seq2  GATCT-AAAAGGCCTC-TGTGAGTCGCGAGCAATTATCTCATTGAGT-GA  234

seq1  CCAAGGAACTACTGCTCAGGGAGGGCAGATGACATCATAGTAATGACTTC  298
        ||| |||| |||||||||   |||||||||||||| |||||||| | |
seq2  GAAAGAAACTGCTGCTCAGG--AGGCAGATGACATCAGAGTAATGATTAC  282

seq1  TAGAAGTGAAACCCAGATGTGTCAATCATCCTTTAATAAAAGGATAGGAG  348
      |||||| |||||| |||| ||||| ||  | || ||||||||||||||||
seq2  TAGAAG-GAAACCTAGATATGTCACTCTACGTTGAATAAAAGGATAGGAG  331

seq1  GGAATTGTGTCCCTCCTAGGATCTCTTGAGGCAGGTCTCATACAGTTCTG  398
      |||| | ||||| ||||||||||||| ||||||||||||||||||| |||
seq2  GGAAGTCTGTCCGTCCTAGGATCTCTCGAGGCAGGTCTCATACAGTCCTG  381

seq1  GCTGGCCTCAAGCTTAATATGTGGCTGAAGATGACCTTGAACTTTCCATC  448
       |||||||||||||||||||||| |||| ||||||||||||||| |||||
seq2  ACTGGCCTCAAGCTTAATATGTGACTGACGATGACCTTGAACTTCCCATC  431

seq1  TTCCTGCCCCTACCTCCCAAGTGCCAGAGTGACATGTGTTTGCCTCCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCCTACCTCCCAAGTGCCAGAGTGACATGTGTTTGCCTCCACA  481

seq1  CCTAGTTTTATGAGGTGCTGGTGATCAAACCCAGGGCCTGATACGTGTTA  548
      | ||||||||||||||||||||||||||||||||| | |||||||| |||
seq2  CATAGTTTTATGAGGTGCTGGTGATCAAACCCAGGACGTGATACGT-TTA  530

seq1  GGCAATGTTCTACCAA-CTGAGTTACAACCATAGTCCCTCTATTCTCTCC  597
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCAATGTTCTACCAAGCTGAGTTACAACCATAGTCCCTCTATTCTCTCC  580

seq1  TGCCCAAGTTTTTCTTACTGCTTCCTCGGGTGTCTTAGACTTGGGGGGTT  647
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGTTTCTCTTACTGCTTCCTCGGGTGTCTTAGACTTGGGGGGTT  630

seq1  CTTGCTGCCCCCCAATTCCCTTCAGCCGATCCCTCTTCCCAGCTGCAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCCCCCCAATTCCCTTCAGCCGATCCCTCTTCCCAGCTGCAGTT  680

seq1  TCTTGGGTGCTCTATCTACCAGGGGACCAAGGATGGGAATGAGGACAATA  747
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTGCTCTATCTACCAGGGGACCAAGGATGGGAATGAGGACAATA  730

seq1  GGATTTGGAGCAAGGATCTCTGGCCCAGTGTAGCCTGCCTGCCTGACCTT  797
      ||||||||||||||||| ||||||||||||||||||||| || |||||||
seq2  GGATTTGGAGCAAGGATATCTGGCCCAGTGTAGCCTGCCGGCGTGACCTT  780

seq1  TCCCTTCTCTTGGACCCAGCGCTGCCTACCTGCTCCCCTCTGGACTTCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCTTGGACCCAGCGCTGCCTACCTGCTCCCCTCTGGACTTCCA  830

seq1  CTGTGACAACGGCAAGTGCATCCGACGCTCCTGGGTGTGTGACGGGGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAACGGCAAGTGCATCCGACGCTCCTGGGTGTGTGACGGGGACA  880

seq1  ATGACTGTGAAGATGACTCTGATGAGCAGGACTGTCGTGAGTGTTGGGAA  947
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGACTGTGAAGATGACTGTGATGAGCAGGACTGTCGTGAGTGTTGGGAA  930

seq1  GGGCCAGGCAAATTCCACGGGCTCTGTCGGGTAAGGGTTTTCAGTCAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCAAATTCCACGGGCTCTGTCGGGTAAGGGTTTTCAGTCAGAA  980

seq1  AATGATGCCCCTGGGTCTATTTGAGCTCTCGGGTCTTCAGCTCTTTTCTG  1047
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCCCCCGGGTCTATTTGAGCTCTCGGGTCTTCAGCTCTTTTCTG  1030

seq1  TCCTTTACCCCTCATCTCTTGATGAGCTAAGCCCACAAGAGGTGAGCACC  1097
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TCCTTTACCCCTCATCTCTTGACGAGGTAAGCCCACAAGAGGTGAGCACC  1080

seq1  TCCCCAGGAGTGCTGGGGTCAGCATTGGGACTGTTGACTGCCCTAGAAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGAGTGCTGGGGTCAGCATTGGGACTGTTGACTGCCCTAGAAGG  1130

seq1  CTTTATTGAGGGGCTTGGAGGCAATGTGCTCTTCGGAGCAGCACTGTGCC  1197
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  CTTTATTGAGGGGCTTGGAGGCAAAGTGCTCTTCGGAGCAGCACTGCGCC  1180

seq1  TGACTCATCTGTGACCACAGCCCCCCGGGAGTGTGAGGAGGA  1239
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATCTGTGACCACAGCCCCCCGGGAGTGTGAGGAGGA  1222

seq1: chr2_91151871_91152961
seq2: B6Ng01-168J15.g_79_1154

seq1  GAGGATCTCTAGTCATAAGAACTATTCTGGAGGGGCTGGCGAGATGGCTC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGATCTCTAGTCATAAGAGCTATTCTGGAGGGGCTGGCGAGATGGCTC  50

seq1  AGTGGTTAAGAGCGCCGGCTGCTCTTCTATAGGTCCCAAGTACAAATCCC  100
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AGTGGTTAAAAGCGCCGGCTGCTCTTCTATATGTCCCAAGTACAAATCCC  100

seq1  AGCAACCACATGGCGGCTCACAACCATCCGTAACGAAATCTGATGCCCTG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAACCACATGGCGGCTCA-AACCATCCGTAACGAAATCTGATGCCCTG  149

seq1  TTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTGGAGTGTCTGAAGACAGCTACCGTGTACTTACATATAATAAATAAA  199

seq1  TAAGTCTTAAAAAAAAAAAAACTATTCTGGAAATGGCTATTTGAGGGAAT  250
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAATCTTAAAAAAAAAAAAACTATTCTGGAAATGGGTATTTGAGGGAAT  249

seq1  CCAGGAGCTGCAAAGAACTGAAAATGGTAACCGTCCTATTTGGTAGACAT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTGCAAATAACTGAAAATGGTAACCGTCCTATTTGGTAGACAT  299

seq1  TACAACTGTCAATAGACGATAAACCACAGCTAGTGGACCATGGTGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGTCAATAGACGATAAACCACAGCTAGTGGACCATGGTGCAGAC  349

seq1  GCTGCTGGTCTCCCAGAATCTTCTCACCGAGGGAGGGCTCAGTTCAGTCA  400
      ||||||||||||||| ||||||||||||||||||||||||| |||| || 
seq2  GCTGCTGGTCTCCCAAAATCTTCTCACCGAGGGAGGGCTCAATTCAATCC  399

seq1  CCCTGAATGCTTTTGTACAGGAATGAATGGCCACTTTTACCATGAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATGCTTTTGTACAGGAATGAATGGCCACTTTTACCATGAAAACC  449

seq1  AAAGGAAGCTGAGGGGTTGCCTCACAGAAATGTATTTCGCCATAAGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCTGAGGGGTTGCCTCACAGAAATGTATTTCGCCATAAGCAGA  499

seq1  TTCAGTGTGAGCACTAGCTCAAGGTGAGGGGCACCCAGGTGCAGAGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||| | || |
seq2  TTCAGTGTGAGCACTAGCTCAAGGTGAGGGGCACCCAGGTGCAAAATAAT  549

seq1  CCTCCTGTTGGTTAGCTTACTCTAATCCTAGAGACCGGTACACAAGGTTA  600
      |||||||||||||| |||||||  |||||| |||||||||||||||||||
seq2  CCTCCTGTTGGTTAACTTACTCATATCCTAAAGACCGGTACACAAGGTTA  599

seq1  TTTTAGACAAGAAAATCAATTTAGCAGAAATGATTGATACTCAGTGTACT  650
      ||||||| ||||||||||||||||||||||||||||||||||   |||||
seq2  TTTTAGATAAGAAAATCAATTTAGCAGAAATGATTGATACTCCTGGTACT  649

seq1  CAAGAGCTAACCTGGCCTCATTTGTCGGAAAAGGAAGAAAGGGAAG-AAA  699
      ||||| ||||||||||||| |||||||||||||||||| ||||||| |||
seq2  CAAGAACTAACCTGGCCTCTTTTGTCGGAAAAGGAAGAGAGGGAAGAAAA  699

seq1  GCTTTTTTTTTTACATCTGGCCTGCCTTTTTGCTGTGGAAATTCCTGCCT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTTACAACTGGCCTGCCTTTTTGCTGTGGAAATTCCTGCCT  749

seq1  CCGAAGCTCTGTGGAGGCAGCTTAGTCATTTCTACATCCGCTTTGCAGAC  799
      || |||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CCTAAGCTCTGTGGACGCAGCTTACTCATTTCTACATCCGCTTTGCAGAC  799

seq1  CACCATGTGTGTCCACCACATTTTCTCACCAGAGCTGTGGTGGTATGTGG  849
      |||| ||||||||| || |||||| || |||||||||||||||| |||| 
seq2  CACC-TGTGTGTCC-CCGCATTTTATCGCCAGAGCTGTGGTGGT-TGTGA  846

seq1  CTGTACTCAGAGGCCTGGGAGATGGTGCCTGGGCCAGAGTCAGAGAGCCA  899
       |||||||  | ||||||||||||| ||| ||||| |||||| | | |||
seq2  TTGTACTC-CACGCCTGGGAGATGGCGCCGGGGCC-GAGTCACACATCCA  894

seq1  TCACCACAGAGCAGCAGAATGGTACCAGACAGAAGGACGTGGGGCAGAGC  949
      |||||||| ||||||  || ||||||| ||| || ||||  ||| | |  
seq2  TCACCACATAGCAGC-TAAAGGTACCA-ACA-AATGACGGTGGGTACATG  941

seq1  TCTGCCT-CTCTCAGTGAGCCTGCCCTGAATCTAGGACTTTTATCCCTCA  998
      | ||||| |||||| |||| |||||||||| ||||||||||||| |||| 
seq2  T-TGCCTGCTCTCA-TGAG-CTGCCCTGAA-CTAGGACTTTTATTCCTC-  986

seq1  AAGTATGGGGATACAGTCCAATAGGGTTTAGTCTGAACTCATCTGTGTGA  1048
      || ||  |||| || | ||| || | |||||||||||| | ||||  |||
seq2  AACTAATGGGAAAC-GACCAGTACGATTTAGTCTGAACACTTCTGGTTGA  1035

seq1  CTCGCCCCTGT-GTCAGCTGTATGAGCTGGTGCTGGATCAAGGC  1091
       ||||||  || ||||||||||| |||||| ||| ||||| |||
seq2  ATCGCCCTAGTAGTCAGCTGTAT-AGCTGG-GCT-GATCAGGGC  1076