BAC Information

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BAC

Clone NameB6Ng01-168M09
Chromosome2 (Build37)
Map Location 161,483,142 - 161,647,474
singlet/doubletdoublet
Overlap genePtprt
Upstream geneTop1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M09.bB6Ng01-168M09.g
ACCDH959925DH959926
length1,168617
definitionDH959925|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M09, 5' end.DH959926|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,483,142 - 161,484,339)(161,646,859 - 161,647,474)
sequence
gaattccacctgtctttgaattataccaagtgacagtgactttgattcct
cgctggggaactaaaaaggtcaaaggcctcttctttcatggattaaaaaa
aaatctatttcacttaaatttaaaatgatggggcttaggtatatcacaga
agataaaaatgtggtgacccttccttccatgtggtccctatgggtttttc
caacatacatatatctaaatatagtcattatattcctagcagatggaaag
ctacaggctaaataagtctctcaaggataattctctgagtctactgctct
agtcttcacagaacctggctttaaccttaacctttgctattcttatttca
gcctggaaataacaaacatcctaaagaggcgaaagtaactgtaacataga
aaccatgccctaatcatgagataggtcatttcaagagttagcatctccct
tcgacaaggagcatcaaaggaaaaaacaaatctggatggagaagtgtttt
agaaggatttatctgggaccaaactcccaactgacagcctcctcctaaga
acaggggtctaatatgtaggtgtagactatatagaatgacagatggcact
tttaaatgaagataatttaaaaagtctttgtttatagaaaggactgttaa
aaaaggttgttggggacagaaagatgatgtagcacagagacaagagacct
tttcccacgtaggagccccgagggacaagcaggggagacctaatcagaat
cctcaagagttggaaagggaagtccagaagggcagatgttttctagtcag
acctagaagaacacacagaggaaatcacaggccacaataccctggctcct
ctcttcccatcctctgacttcctatagcagttctctttagctgaatctaa
ttaaaagctacagtgttaaaaggcccctctgagggagcccctgagaacgc
attcctgaagcagaaacatggcagagaaagacagactgaacctggctcta
ggactgagagaaaaaagctttatatcctcatttggccatatctgagatcc
atgcagcttaagtgattcttcataattattcctaaaaatgtccggaagga
ttgcactcagaaaagaaaccaatgttttgtcataatgattgctcaaggcg
actgctgtatcatggaac
gaattcccaaattccacccaatatttggttgtgggacactgcatctgatg
ccatcagttgctacatgaagtctctctgatgatgactatgctaggctcca
gtcccagcgcatcatcgggcagacaggacaaagtataggtgaggggtttt
gtgggtgggttggtgtttcagatcccatcacttggtggctttaaggccac
ctttttattcacttcctaaatcctacaagatggggagaaaaatcaatgac
atgaccccacatttgtgtctcatatctttttaaaaaaattgtatttaaaa
attacttaatactagcagtataccaagtgggtatggagttgccctggaga
agctgttaagtgttaagtgtgtgttaaggtccatcccttaacacactctc
tcaacttcctgtggagttagttgggctttacaatatctcctgccagtagt
gtaaaagtgactaactcactgggcaagtccctcttgtggtaggacaacta
taggtccacatagctgaccttctcgcccctagaaactggtcacccaggct
ggtgtcaggctaggtagtagaattaaaaattgaggacacccgcaaaaaaa
tgttccccacttcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161483142_161484339
seq2: B6Ng01-168M09.b_49_1216

seq1  GAATTCCACCTGTCTTTGAATTATACCAAGTGACAGTGACTTTGATTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGTCTTTGAATTATACCAAGTGACAGTGACTTTGATTCCT  50

seq1  CGCTGGGGAACTAAAAAGGTCAAAGGCCTCTTCTTTCATGGATTAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGGGAACTAAAAAGGTCAAAGGCCTCTTCTTTCATGGATTAAAAAA  100

seq1  AAATCTATTTCACTTAAATTTAAAATGATGGGGCTTAGGTATATCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTTCACTTAAATTTAAAATGATGGGGCTTAGGTATATCACAGA  150

seq1  AGATAAAAATGTGGTGACCCTTCCTTCCATGTGGTCCCTATGGGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAATGTGGTGACCCTTCCTTCCATGTGGTCCCTATGGGTTTTTC  200

seq1  CAACATACATATATCTAAATATAGTCATTATATTCCTAGCAGATGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACATATATCTAAATATAGTCATTATATTCCTAGCAGATGGAAAG  250

seq1  CTACAGGCTAAATAAGTCTCTCAAGGATAATTCTCTGAGTCTACTGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCTAAATAAGTCTCTCAAGGATAATTCTCTGAGTCTACTGCTCT  300

seq1  AGTCTTCACAGAACCTGGCTTTAACCTTAACCTTTGCTATTCTTATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCACAGAACCTGGCTTTAACCTTAACCTTTGCTATTCTTATTTCA  350

seq1  GCCTGGAAATAACAAACATCCTAAAGAGGCGAAAGTAACTGTAACATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAATAACAAACATCCTAAAGAGGCGAAAGTAACTGTAACATAGA  400

seq1  AACCATGCCCTAATCATGAGATAGGTCATTTCAAGAGTTAGCATCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCCCTAATCATGAGATAGGTCATTTCAAGAGTTAGCATCTCCCT  450

seq1  TCGACAAGGAGCATCAAAGGAAAAAACAAATCTGGATGGAGAAGTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAGGAGCATCAAAGGAAAAAACAAATCTGGATGGAGAAGTGTTTT  500

seq1  AGAAGGATTTATCTGGGACCAAACTCCCAACTGACAGCCTCCTCCTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTTATCTGGGACCAAACTCCCAACTGACAGCCTCCTCCTAAGA  550

seq1  ACAGGGGTCTAATATGTAGGTGTAGACTATATAGAATGACAGATGGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGTCTAATATGTAGGTGTAGACTATATAGAATGACAGATGGCACT  600

seq1  TTTAAATGAAGATAATTTAAAAAGTCTTTGTTTATAGAAAGGACTGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAAGATAATTTAAAAAGTCTTTGTTTATAGAAAGGACTGTTAA  650

seq1  AAAAGGTTGTTGGGGACAGAAAGATGATGTAGCACAGAGACAAGAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTGTTGGGGACAGAAAGATGATGTAGCACAGAGACAAGAGACCT  700

seq1  TTTCCCACGTAGGAGCCCCGAGGGACAAGCAGGGGAGACCTAATCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACGTAGGAGCCCCGAGGGACAAGCAGGGGAGACCTAATCAGAAT  750

seq1  CCTCAAGAGTTGGAAAGGGAAGTCCAGAAGGGCAGATGTTTTCTAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAGTTGGAAAGGGAAGTCCAGAAGGGCAGATGTTTTCTAGTCAG  800

seq1  ACCTAGAAGAACACACAGAGGAAATCACAGGCCACAATACCCTGGCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAGAACACACAGAGGAAATCACAGGCCACAATACCCTGGCTCCT  850

seq1  CTCTTCCCATCCTCTGACTTCCTATAGCAGTTCTCTTTAGCTGAATCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCATCCTCTGACTTCCTATAGCAGTTCTCTTTAGCTGAATCTAA  900

seq1  TTAAAAGCTACAGGTGTTAAAAGGCCCCTCTGAGGGAGCCCCTGAAGAAC  950
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  TTAAAAGCTACA-GTGTTAAAAGGCCCCTCTGAGGGAGCCCCTG-AGAAC  948

seq1  GCATTCCTGAAGCAGAAAACATGGCAGAGAAAAGGACAGACTGAACCTGG  1000
      ||||||||||||||| ||||||||||||||||  ||||||||||||||||
seq2  GCATTCCTGAAGCAG-AAACATGGCAGAGAAA--GACAGACTGAACCTGG  995

seq1  CTCTAGGACTGAGAAGAAAAAAAGCTTTTATAATTCCTCATTTGGCCATA  1050
      ||||||||||||||   |||||||| ||||||  ||||||||||||||| 
seq2  CTCTAGGACTGAGA--GAAAAAAGC-TTTATA--TCCTCATTTGGCCAT-  1039

seq1  ATCTGAAGATCCATGCAGCCTAAAGTGGAATTCTTCATTTATTTATTCCT  1100
      ||||| |||||||||||| || |||||  ||||||||  || ||||||||
seq2  ATCTG-AGATCCATGCAG-CTTAAGTG--ATTCTTCA--TAATTATTCCT  1083

seq1  AAAAATTGGTCCGGGGAAGGAATTGCACTCAAGAAAAGAAACACATGTTT  1150
      ||||||  ||||  |||||| ||||||||| |||||||||||  ||||||
seq2  AAAAAT--GTCC--GGAAGG-ATTGCACTC-AGAAAAGAAACCAATGTTT  1127

seq1  TTGGTCATTAATGGTTTGGCCACAGGCAGACTGCTGTATCAGTGGAAC  1198
      |  |||| ||||| ||  ||   |||| ||||||||||||| ||||||
seq2  T--GTCA-TAATGATT--GCTCAAGGC-GACTGCTGTATCA-TGGAAC  1168

seq1: chr2_161646859_161647474
seq2: B6Ng01-168M09.g_69_685 (reverse)

seq1  GGTTGAAGTGGGG-ACATTTTTTTGCGGGTGTCCTCAATTTTTAATTCTA  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGTGGGGAACATTTTTTTGCGGGTGTCCTCAATTTTTAATTCTA  50

seq1  CTACCTAGCCTGACACCAGCCTGGGTGACCAGTTTCTAGGGGCGAGAGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTACCTAGCCTGACACCAGCCTGGGTGACCAGTTTCTAGGGGCGAGAAGG  100

seq1  TCAGCTGTGTGGACCTATAGTTGTCCTACCACAAGAGGGACTTGCCCAGT  149
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATGTGGACCTATAGTTGTCCTACCACAAGAGGGACTTGCCCAGT  150

seq1  GTGTTAGTCACTTTTACACTACTGGCAGGAGATATTGTAAAGCCCAACTA  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTCACTTTTACACTACTGGCAGGAGATATTGTAAAGCCCAACTA  200

seq1  ACTCCACAGGAAGTTGAGAGAGTGTGTTAAGGGATGGACCTTAACACACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGGAAGTTGAGAGAGTGTGTTAAGGGATGGACCTTAACACACA  250

seq1  CTTAACACTTAACAGCTTCTCCAGGGCAACTCCATACCCACTTGGTATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACTTAACAGCTTCTCCAGGGCAACTCCATACCCACTTGGTATAC  300

seq1  TGCTAGTATTAAGTAATTTTTAAATACAATTTTTTTAAAAAGATATGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTATTAAGTAATTTTTAAATACAATTTTTTTAAAAAGATATGAGA  350

seq1  CACAAATGTGGGGTCATGTCATTGATTTTTCTCCCCATCTTGTAGGATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTGGGGTCATGTCATTGATTTTTCTCCCCATCTTGTAGGATTT  400

seq1  AGGAAGTGAATAAAAAGGTGGCCTTAAAGCCACCAAGTGATGGGATCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGAATAAAAAGGTGGCCTTAAAGCCACCAAGTGATGGGATCTGA  450

seq1  AACACCAACCCACCCACAAAACCCCTCACCTATACTTTGTCCTGTCTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAACCCACCCACAAAACCCCTCACCTATACTTTGTCCTGTCTGCC  500

seq1  CGATGATGCGCTGGGACTGGAGCCTAGCATAGTCATCATCAGAGAGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGATGCGCTGGGACTGGAGCCTAGCATAGTCATCATCAGAGAGACTT  550

seq1  CATGTAGCAACTGATGGCATCAGATGCAGTGTCCCACAACCAAATATTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCAACTGATGGCATCAGATGCAGTGTCCCACAACCAAATATTGG  600

seq1  GTGGAATTTGGGAATTC  616
      |||||||||||||||||
seq2  GTGGAATTTGGGAATTC  617