BAC Information

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BAC

Clone NameB6Ng01-168M14
Chromosome2 (Build37)
Map Location 131,035,646 - 131,232,306
singlet/doubletdoublet
Overlap gene2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
Upstream geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b
Downstream geneSmox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M14.bB6Ng01-168M14.g
ACCDH959935DH959936
length1,1261,088
definitionDH959935|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M14, 5' end.DH959936|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,231,190 - 131,232,306)(131,035,646 - 131,036,729)
sequence
gaattctccagaacaatgaaagccttcagagggaacctgaagctctttct
tagtctccaacctgccagcttatttcacaaattgttgtgatttttgtgag
tgaattacttaaaatagttctctcattcacctgcatatcctattgatttt
gtttcctccagagaacccagcccagatacaagggtgtggaaatagattct
atagccttgataagaaagatggctaggtcatatggacacaggccaggggc
atgggagcggcccaggccaagcacctttgcaatttattaagtgagccaac
acaagctggagaatggggtgggtatgaacagagtttggaacttgcaacct
ttggtgtctgattttgagcactgacacttcactgtccaatcaaggggact
tttaacaatgcctgttatccactgtgttcccaagcttctatgaaaaagaa
aggactctactggatttgaaactatgggtctctcctatacacctaccccc
aacctttttagattcctgagacctcttgcatctttcaccactcatctcaa
aactccttggagaattttaaaagctgcactaatccacctgaaaaaatagt
acgcattctgaaagagctttagcttgatcccccatgaatccccaaactag
ttggaaagttggccgggacatactgaaccttccagaagtgagttctgaat
ggacaaacagtggagtggctctgtgatttagaacacacagaatcttcaat
gctgagacctgcaatgcctgcatccagctgtacagtttggtcttggtccc
aaacaagcaagtcaaggggtaccactcagccctgcacagagcatcactca
gccctgcatagagtatcactcagccctgcatagagcaccactcagccctg
catagagtatcactcagccccacatagaacatcactcagccctgcacagg
gcacactcagccctgcacagagcatcactcagctctgcatagagagcatc
actcagccctgcacagagagcatcactcagccctgcacagggcaccactc
agtccctgccagagcatcactcagcccacatagaaaattcctcagcctgc
caaggaatcactcagctctgcacaga
gaattcccatgcctttcagagttaaaggaatgtgtgtgtcccaaacacct
cttgggccattggttcaaatgtaaactcatgactgcgtttcagcaggcag
acttctgctcctgcaattcggtcattactactgcacagagcttggcctga
ggacagccgagcggaggcttccttggacagttccgcgcacgccgccgggg
tcctcagcgccccctggcggtcgccctcgcagtggccaggccgcagctga
tcaagggctttctagcgccttcaaagaagctttccgtagccatgagccct
ccagggcgcccccgcagccgaggggatcggctggtcagaagcgtgtacgt
cctcgggaagtcgaggaccacgccgggaccacaggcccatggctgaacta
caaaccccagagttcagcgcgccgctgctgcccgcgcgaggcagtgacgc
aactggggcagatagtgggaggaggacgtggtgccctggggtaatgacgc
gctcagctggcggcagaagggtgaccagaggtcaaagtctgcaaatctag
gttcccttcctgaagcgggcttgctaaatttcctgttgggtaactttgaa
ttcttggtctgtttagctttagctgtggctaaacactgtttctcctcagc
cttgagaccgggggctgccactctcgctttgcccagagcggccaggctct
ctctctgtgtatctgtggctgacttgaattcctgattctcttgcctccgc
ctcccgagggttgggatttcaggtacgtgccaccacgtctttctttttga
aatgatttcggttatctcgggtagatccctttggggtaaggtttgccccg
ctcactctgtcccaggcggatgtgaatcggttgcagatgcgggcatttta
gaggtattttcttgagtgtttcctaaaacaaagacatgttcctgcattca
aaaccagtgtcactgatgaagactccccctctcacactcatactaaagtt
gtcttcaatggagcccggtatggaggctgggtattttgttccggtgagca
gacttggcattcagctgtggtctctggatttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131231190_131232306
seq2: B6Ng01-168M14.b_57_1169 (reverse)

seq1  TCTGTGCAGAGCTGAGTGATGCTCTGTGCAGGGCTGAGTGATGTTCTATG  50
      |||||||||||||||||||| | ||  ||| |||||||  || |||||||
seq2  TCTGTGCAGAGCTGAGTGATTC-CTTGGCA-GGCTGAGGAATTTTCTATG  48

seq1  TGGGGCTGAGTGATGCTCTGTGCAGGG-CTGAGTGGTGCCCTGTGCAGGG  99
      | |||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  T-GGGCTGAGTGATGCTCTG-GCAGGGACTGAGTGGTGCCCTGTGCAGGG  96

seq1  CTGAGTGATGCTCTCTGTGCAGGGCTGAGTGATGCTCTCTATGCAGAGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGATGCTCTCTGTGCAGGGCTGAGTGATGCTCTCTATGCAGAGCT  146

seq1  GAGTGATGCTCTGTGCAGGGCTGAGTGGTGCCCTGTGCAGGGCTGAGTGA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGTGATGCTCTGTGCAGGGCTGAGT-GTGCCCTGTGCAGGGCTGAGTGA  195

seq1  TGTTCTATGTGGGGCTGAGTGATACTCTATGCAGGGCTGAGTGGTGCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGTGGGGCTGAGTGATACTCTATGCAGGGCTGAGTGGTGCTCT  245

seq1  ATGCAGGGCTGAGTGATACTCTATGCAGGGCTGAGTGATGCTCTGTGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGCTGAGTGATACTCTATGCAGGGCTGAGTGATGCTCTGTGCAG  295

seq1  GGCTGAGTGGTACCCCTTGACTTGCTTGTTTGGGACCAAGACCAAACTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTGGTACCCCTTGACTTGCTTGTTTGGGACCAAGACCAAACTGT  345

seq1  ACAGCTGGATGCAGGCATTGCAGGTCTCAGCATTGAAGATTCTGTGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGATGCAGGCATTGCAGGTCTCAGCATTGAAGATTCTGTGTGTT  395

seq1  CTAAATCACAGAGCCACTCCACTGTTTGTCCATTCAGAACTCACTTCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCACAGAGCCACTCCACTGTTTGTCCATTCAGAACTCACTTCTGG  445

seq1  AAGGTTCAGTATGTCCCGGCCAACTTTCCAACTAGTTTGGGGATTCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAGTATGTCCCGGCCAACTTTCCAACTAGTTTGGGGATTCATGG  495

seq1  GGGATCAAGCTAAAGCTCTTTCAGAATGCGTACTATTTTTTCAGGTGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGCTAAAGCTCTTTCAGAATGCGTACTATTTTTTCAGGTGGAT  545

seq1  TAGTGCAGCTTTTAAAATTCTCCAAGGAGTTTTGAGATGAGTGGTGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGCTTTTAAAATTCTCCAAGGAGTTTTGAGATGAGTGGTGAAAG  595

seq1  ATGCAAGAGGTCTCAGGAATCTAAAAAGGTTGGGGGTAGGTGTATAGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAGGTCTCAGGAATCTAAAAAGGTTGGGGGTAGGTGTATAGGAG  645

seq1  AGACCCATAGTTTCAAATCCAGTAGAGTCCTTTCTTTTTCATAGAAGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATAGTTTCAAATCCAGTAGAGTCCTTTCTTTTTCATAGAAGCTT  695

seq1  GGGAACACAGTGGATAACAGGCATTGTTAAAAGTCCCCTTGATTGGACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAGTGGATAACAGGCATTGTTAAAAGTCCCCTTGATTGGACAG  745

seq1  TGAAGTGTCAGTGCTCAAAATCAGACACCAAAGGTTGCAAGTTCCAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCAGTGCTCAAAATCAGACACCAAAGGTTGCAAGTTCCAAACT  795

seq1  CTGTTCATACCCACCCCATTCTCCAGCTTGTGTTGGCTCACTTAATAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATACCCACCCCATTCTCCAGCTTGTGTTGGCTCACTTAATAAAT  845

seq1  TGCAAAGGTGCTTGGCCTGGGCCGCTCCCATGCCCCTGGCCTGTGTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGTGCTTGGCCTGGGCCGCTCCCATGCCCCTGGCCTGTGTCCAT  895

seq1  ATGACCTAGCCATCTTTCTTATCAAGGCTATAGAATCTATTTCCACACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAGCCATCTTTCTTATCAAGGCTATAGAATCTATTTCCACACCC  945

seq1  TTGTATCTGGGCTGGGTTCTCTGGAGGAAACAAAATCAATAGGATATGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGGGCTGGGTTCTCTGGAGGAAACAAAATCAATAGGATATGCA  995

seq1  GGTGAATGAGAGAACTATTTTAAGTAATTCACTCACAAAAATCACAACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGAGAGAACTATTTTAAGTAATTCACTCACAAAAATCACAACAA  1045

seq1  TTTGTGAAATAAGCTGGCAGGTTGGAGACTAAGAAAGAGCTTCAGGTTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAATAAGCTGGCAGGTTGGAGACTAAGAAAGAGCTTCAGGTTCC  1095

seq1  CTCTGAAGGCTTTCATTG  1117
      ||||||||||||||||||
seq2  CTCTGAAGGCTTTCATTG  1113

seq1: chr2_131035646_131036729
seq2: B6Ng01-168M14.g_70_1157

seq1  GAATTCCCATGCCTTTCAGAGTTAAAGGAATGTGTGTGTCCCAAACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGCCTTTCAGAGTTAAAGGAATGTGTGTGTCCCAAACACCT  50

seq1  CTTGGGCCATTGGTTCAAATGTAAACTCATGACTGCGTTTCAGCAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCATTGGTTCAAATGTAAACTCATGACTGCGTTTCAGCAGGCAG  100

seq1  ACTTCTGCTCCTGCAATTCGGTCATTACTACTGCACAGAGCTTGGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTCCTGCAATTCGGTCATTACTACTGCACAGAGCTTGGCCTGA  150

seq1  GGACAGCCGAGCGGAGGCTTCCTTGGACAGTTCCGCGCACGCCGCCGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCGAGCGGAGGCTTCCTTGGACAGTTCCGCGCACGCCGCCGGGG  200

seq1  TCCTCAGCGCCCCCTGGCGGTCGCCCTCGCAGTGGCCAGGCCGCAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCGCCCCCTGGCGGTCGCCCTCGCAGTGGCCAGGCCGCAGCTGA  250

seq1  TCAAGGGCTTTCTAGCGCCTTCAAAGAAGCTTTCCGTAGCCATGAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCTTTCTAGCGCCTTCAAAGAAGCTTTCCGTAGCCATGAGCCCT  300

seq1  CCAGGGCGCCCCCGCAGCCGAGGGGATCGGCTGGTCAGAAGCGTGTACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCGCCCCCGCAGCCGAGGGGATCGGCTGGTCAGAAGCGTGTACGT  350

seq1  CCTCGGGAAGTCGAGGACCACGCCGGGACCACAGGCCCATGGCTGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGAAGTCGAGGACCACGCCGGGACCACAGGCCCATGGCTGAACTA  400

seq1  CAAACCCCAGAGTTCAGCGCGCCGCTGCTGCCCGCGCGAGGCAGTGACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCAGAGTTCAGCGCGCCGCTGCTGCCCGCGCGAGGCAGTGACGC  450

seq1  AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGC  500

seq1  GCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAG  550

seq1  GTTCCCTTCCTGAAGCGGGCTTGCTAAATTTCCTGTTGGGTAACTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTCCTGAAGCGGGCTTGCTAAATTTCCTGTTGGGTAACTTTGAA  600

seq1  TTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGC  650

seq1  CTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCT  700

seq1  CTCTCTGTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGC  750

seq1  CTCCCGAGGGTTGGGATTTCAGGTACGTGCCACCACGTCTTTCTTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAGGGTTGGGATTTCAGGTACGTGCCACCACGTCTTTCTTTTTGA  800

seq1  AATGATTTCGGTTATCTC-GGTAGATCCCTTT-GGGTAAGGTTTGCCCCG  848
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AATGATTTCGGTTATCTCGGGTAGATCCCTTTGGGGTAAGGTTTGCCCCG  850

seq1  CTCACTCTGTCCCA-GCCGATGTGAATCGGTTGCAGATGC-GGCATTTTA  896
      |||||||||||||| || |||||||||||||||||||||| |||||||||
seq2  CTCACTCTGTCCCAGGCGGATGTGAATCGGTTGCAGATGCGGGCATTTTA  900

seq1  GAGGTATTTTCTTGAGTGTTTCCTAAAACAAAGACATGTTCCTGCATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTTCTTGAGTGTTTCCTAAAACAAAGACATGTTCCTGCATTCA  950

seq1  AAACCAAGTGTCACTGATGAAGACT-CCCCTCTCACACTCCATACTAAAA  995
      ||||| ||||||||||||||||||| ||||||||||||| |||||| |||
seq2  AAACC-AGTGTCACTGATGAAGACTCCCCCTCTCACACT-CATACT-AAA  997

seq1  GTTGTC-TCAATGGAGCCCGGTATGGAGGCTGGGTTATTTTGTTCCGG-G  1043
      |||||| ||||||||||||||||||||||||||| ||||||||||||| |
seq2  GTTGTCTTCAATGGAGCCCGGTATGGAGGCTGGG-TATTTTGTTCCGGTG  1046

seq1  AGCAGACTTGGCATTCAGCTGTGGTCTCT-GATTTTTTTTTT  1084
      ||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCAGACTTGGCATTCAGCTGTGGTCTCTGGATTTTTTTTTT  1088