BAC Information

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BAC

Clone NameB6Ng01-168M16
Chromosome2 (Build37)
Map Location 167,958,034 - 168,015,003
singlet/doubletdoublet
Overlap geneAdnp
Upstream geneKcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b
Downstream geneDpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M16.bB6Ng01-168M16.g
ACCDH959939DH959940
length1,1241,129
definitionDH959939|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M16, 5' end.DH959940|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,013,863 - 168,015,003)(167,958,034 - 167,959,171)
sequence
gaattctcaactgagggagccagggtttgggatcctatcatcagtggaat
tagtaacttttacaagttgtacatgttttgactttgacttaaattttttt
ttccaatagaaactatgttccaacttcctgtcaacaatcttggcagttta
agaaaagcccggaaaactgtgaaaaaaatacttagtgacattgggttgga
atactgtaaagaacatatagaagtaagtagcatgccatttttaaatttta
atgtgactcagctcctgatccattactgtgtccatgggcaaagatggttc
actaataggtgtggtagtaaattttaactagaccttcagcttcaccaaaa
ccttctcacgtaggatagcttacttcattttccctgaaagcctgttcatc
ttggtaacctgaggcaaaactaattacagcacagagaatgtacacaagtc
agacagtgcacatggtgctttaaaactgtctatgagctttctccttgaaa
taacctttaggggctctaggaattcttgtctccagtctatgaaagaagaa
ttgggaaagcagagatgccaggctctcagctagggaaggggcagtgagga
ctgtagggcctgttctccttctgataggcctgggtgtttctgttgacctg
ttgaggcacagtcgtctgagtgtttgtcatctctttccttaggatttgag
cacttgtcagccttctgaactatcaaagacttatcttgcccttgtgtaac
agtttggcctttcagactgtttcctatcctttttattctgagcctttcaa
gccccataagctagatagagacgtctcctccttttccagatctccttgtt
cccaatcttacagttagttagacacaacctcccattgaagtgcttacagc
tacttccctgacacacttttaagttcctgctgatcaggccacaattggcc
ttggttggccacttatctatcccactactacctggcacagtgcttggcac
aaaacagatgctgagacacaggtcagggtggcattgatgtttatttattc
gtgagcagttctcttctgagtcccacctcaagtagtcagatgtacctgac
aagttctcagaattgactctggtg
gaattctctttgtagaccaggctggcctagaactcagagatctgcctgcc
tctgcttcctgcatgctgggactaaaggcacgcactgccactcctaacta
gagtcacacttgaatttcaaagttggaataaagtaaaaacttcagaagcc
atgtggcttggtaaagaacactgctgaccttcaggcccacagactcctgg
ttcatcctctctagactcagtaggcaaatcactgatgtctgtccccattt
cacagatgaggatgttgagtccttagtactctgggactggcctagggtcc
tggtgaaatggaagcaggtccagaagccaccaagtggacagacaccaggt
gtcaccctccagttcaacacattgccttgtgggaccaagatacaagtggc
tctgtaggggctggggttggagccaggtgcaggaggtggtggtgctctga
ccaggattggtggggcagcaaacatggagagccactcagaggagatgggt
tagacataaatcaatgaggtgagtgtcacaggagagccacagagagaaag
acgaaggctgtggtgggtgggtgttgtacggtgatagtgaaaactgattt
ctcccgagaatgagcctcatgtatttagatggaaagagaaagaaagagta
acccgtgctggtgcagactgaggaggctgaggcaggaggattacaaattc
aaggcagccagagcaatctagcaagaccctgtccaaaaatagaaagtggg
ggcaggaagatgtctcagcgggtaaagtgcttgccctgcccgtgtgagag
cctgagatgaggtgcccagcacccacataaaacctgggcccagaacagtg
tgtccagaattccagcagacaggaggtggagagaggagggtcctaggtct
ggctgactcactgactgagtttcaggttcagtgagagactctgtctcaaa
atataaggtagaggaccaggcattgtggcagtgcgcacaggcgtacttta
atccctggacttgggaggcagagcaagaagatctctgtggttcgggcagc
caggtctgcaggagaacctccgtctcaaagaatgagttaagatagaggaa
gacacccaacggtacctttggacctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_168013863_168015003
seq2: B6Ng01-168M16.b_45_1168 (reverse)

seq1  CACCAGAAGTCCACTTCTGAGAAACTTTGGTTTCCAGGGTACATCCCTGA  50
      |||||| ||| || ||||||| |||||  ||   || |||||||  ||||
seq2  CACCAG-AGT-CAATTCTGAG-AACTT--GT---CA-GGTACAT--CTGA  39

seq1  CTACTTTGAGTGGGACTCAGAAGAGAACTTGCTCCACGAATAAAATATAC  100
      ||||||   ||||||||||||||||||| |||| ||||||| ||||| ||
seq2  CTACTTGAGGTGGGACTCAGAAGAGAAC-TGCT-CACGAAT-AAATAAAC  86

seq1  ATCAATGCCACCCCTGACCTGTGTTCTCAGCATCTGTTTTGTGCCAAGCA  150
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ATCAATGCCA-CCCTGACCTGTG-TCTCAGCATCTGTTTTGTGCCAAGCA  134

seq1  CTGTGCCAGGTAGGTAGTGGGATAGATAAGTGGCCAACCAAGGCCAATTG  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAGGTA-GTAGTGGGATAGATAAGTGGCCAACCAAGGCCAATTG  183

seq1  TGGCCTGATCAGCAGGAACTTAAAAGTGTGTCAGGGAAGTAGCTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGATCAGCAGGAACTTAAAAGTGTGTCAGGGAAGTAGCTGTAAGC  233

seq1  ACTTCAATGGGAGGTTGTGTCTAACTAACTGTAAGATTGGGAACAAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGGGAGGTTGTGTCTAACTAACTGTAAGATTGGGAACAAGGAG  283

seq1  ATCTGGAAAAGGAGGAGACGTCTCTATCTAGCTTATGGGGCTTGAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAAAGGAGGAGACGTCTCTATCTAGCTTATGGGGCTTGAAAGGC  333

seq1  TCAGAATAAAAAGGATAGGAAACAGTCTGAAAGGCCAAACTGTTACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAAAAAGGATAGGAAACAGTCTGAAAGGCCAAACTGTTACACAA  383

seq1  GGGCAAGATAAGTCTTTGATAGTTCAGAAGGCTGACAAGTGCTCAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGATAAGTCTTTGATAGTTCAGAAGGCTGACAAGTGCTCAAATCC  433

seq1  TAAGGAAAGAGATGACAAACACTCAGACGACTGTGCCTCAACAGGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGAGATGACAAACACTCAGACGACTGTGCCTCAACAGGTCAAC  483

seq1  AGAAACACCCAGGCCTATCAGAAGGAGAACAGGCCCTACAGTCCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCCAGGCCTATCAGAAGGAGAACAGGCCCTACAGTCCTCACTG  533

seq1  CCCCTTCCCTAGCTGAGAGCCTGGCATCTCTGCTTTCCCAATTCTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCTAGCTGAGAGCCTGGCATCTCTGCTTTCCCAATTCTTCTTT  583

seq1  CATAGACTGGAGACAAGAATTCCTAGAGCCCCTAAAGGTTATTTCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTGGAGACAAGAATTCCTAGAGCCCCTAAAGGTTATTTCAAGGA  633

seq1  GAAAGCTCATAGACAGTTTTAAAGCACCATGTGCACTGTCTGACTTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCATAGACAGTTTTAAAGCACCATGTGCACTGTCTGACTTGTGT  683

seq1  ACATTCTCTGTGCTGTAATTAGTTTTGCCTCAGGTTACCAAGATGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGTGCTGTAATTAGTTTTGCCTCAGGTTACCAAGATGAACAG  733

seq1  GCTTTCAGGGAAAATGAAGTAAGCTATCCTACGTGAGAAGGTTTTGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGGGAAAATGAAGTAAGCTATCCTACGTGAGAAGGTTTTGGTGA  783

seq1  AGCTGAAGGTCTAGTTAAAATTTACTACCACACCTATTAGTGAACCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGGTCTAGTTAAAATTTACTACCACACCTATTAGTGAACCATCT  833

seq1  TTGCCCATGGACACAGTAATGGATCAGGAGCTGAGTCACATTAAAATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATGGACACAGTAATGGATCAGGAGCTGAGTCACATTAAAATTTA  883

seq1  AAAATGGCATGCTACTTACTTCTATATGTTCTTTACAGTATTCCAACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCATGCTACTTACTTCTATATGTTCTTTACAGTATTCCAACCCA  933

seq1  ATGTCACTAAGTATTTTTTTCACAGTTTTCCGGGCTTTTCTTAAACTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTAAGTATTTTTTTCACAGTTTTCCGGGCTTTTCTTAAACTGCC  983

seq1  AAGATTGTTGACAGGAAGTTGGAACATAGTTTCTATTGGAAAAAAAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTTGACAGGAAGTTGGAACATAGTTTCTATTGGAAAAAAAAATT  1033

seq1  TAAGTCAAAGTCAAAACATGTACAACTTGTAAAAGTTACTAATTCCACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAAAGTCAAAACATGTACAACTTGTAAAAGTTACTAATTCCACTG  1083

seq1  ATGATAGGATCCCAAACCCTGGCTCCCTCAGTTGAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGGATCCCAAACCCTGGCTCCCTCAGTTGAGAATTC  1124

seq1: chr2_167958034_167959171
seq2: B6Ng01-168M16.g_69_1197

seq1  GAATTCTCTTTGTAGACCAGGCTGGCCTAGAACTCAGAGATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTAGACCAGGCTGGCCTAGAACTCAGAGATCTGCCTGCC  50

seq1  TCTGCTTCCTGCATGCTGGGACTAAAGGCACGCACTGCCACTCCTAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTGCATGCTGGGACTAAAGGCACGCACTGCCACTCCTAACTA  100

seq1  GAGTCACACTTGAATTTCAAAGTTGGAATAAAGTAAAAACTTCAGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACACTTGAATTTCAAAGTTGGAATAAAGTAAAAACTTCAGAAGCC  150

seq1  ATGTGGCTTGGTAAAGAACACTGCTGACCTTCAGGCCCACAGACTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTGGTAAAGAACACTGCTGACCTTCAGGCCCACAGACTCCTGG  200

seq1  TTCATCCTCTCTAGACTCAGTAGGCAAATCACTGATGTCTGTCCCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCTCTAGACTCAGTAGGCAAATCACTGATGTCTGTCCCCATTT  250

seq1  CACAGATGAGGATGTTGAGTCCTTAGTACTCTGGGACTGGCCTAGGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGAGGATGTTGAGTCCTTAGTACTCTGGGACTGGCCTAGGGTCC  300

seq1  TGGTGAAATGGAAGCAGGTCCAGAAGCCACCAAGTGGACAGACACCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATGGAAGCAGGTCCAGAAGCCACCAAGTGGACAGACACCAGGT  350

seq1  GTCACCCTCCAGTTCAACACATTGCCTTGTGGGACCAAGATACAAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTCCAGTTCAACACATTGCCTTGTGGGACCAAGATACAAGTGGC  400

seq1  TCTGTAGGGGCTGGGGTTGGAGCCAGGTGCAGGAGGTGGTGGTGCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGGGCTGGGGTTGGAGCCAGGTGCAGGAGGTGGTGGTGCTCTGA  450

seq1  CCAGGATTGGTGGGGCAGCAAACATGGAGAGCCACTCAGAGGAGATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTGGTGGGGCAGCAAACATGGAGAGCCACTCAGAGGAGATGGGT  500

seq1  TAGACATAAATCAATGAGGTGAGTGTCACAGGAGAGCCACAGAGAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATAAATCAATGAGGTGAGTGTCACAGGAGAGCCACAGAGAGAAAG  550

seq1  ACGAAGGCTGTGGTGGGTGGGTGTTGTACGGTGATAGTGAAAACTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGCTGTGGTGGGTGGGTGTTGTACGGTGATAGTGAAAACTGATTT  600

seq1  CTCCCGAGAATGAGCCTCATGTATTTAGATGGAAAGAGAAAGAAAGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAGAATGAGCCTCATGTATTTAGATGGAAAGAGAAAGAAAGAGTA  650

seq1  ACCCGTGCTGGTGCAGACTGAGGAGGCTGAGGCAGGAGGATTACAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTGCTGGTGCAGACTGAGGAGGCTGAGGCAGGAGGATTACAAATTC  700

seq1  AAGGCAGCCAGAGCAATCTAGCAAGACCCTGTCCAAAAATAGAAGGTGGG  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGCAGCCAGAGCAATCTAGCAAGACCCTGTCCAAAAATAGAAAGTGGG  750

seq1  GGCAGGAAGATGTCTCAGCGGGTAAAGTGCTTGCCCTGCCCGTGTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAGATGTCTCAGCGGGTAAAGTGCTTGCCCTGCCCGTGTGAGAG  800

seq1  CCTGAGATGAGGTGCCCAGCACCCACATAAAACCTGGGCCCAGAACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGAGGTGCCCAGCACCCACATAAAACCTGGGCCCAGAACAGTG  850

seq1  TGTCCAGAATTCCAGCAGACAGGAGGTGGAGAGAGGAGGGTCCTAGGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGAATTCCAGCAGACAGGAGGTGGAGAGAGGAGGGTCCTAGGTCT  900

seq1  GGCTGAACCACTGACTGAGTTTCAGGTTCAGTGAGAGACCCTGTCTCAAA  950
      ||||||  ||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCTGACTCACTGACTGAGTTTCAGGTTCAGTGAGAGACTCTGTCTCAAA  950

seq1  ATATAAGGTAGAGGACCAGGCATTGTGGCAGTGCGCACAGGCGTAACTTT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATAAGGTAGAGGACCAGGCATTGTGGCAGTGCGCACAGGCGT-ACTTT  999

seq1  AATCCCTGGACTTGGGAGGCAGAGGCAAGAAGATCTCTGTGGGTTCTGGG  1050
      ||||||||||||||||||||||| |||||||||||||||| |||||  ||
seq2  AATCCCTGGACTTGGGAGGCAGA-GCAAGAAGATCTCTGT-GGTTC--GG  1045

seq1  CCAGCCAGGTCTGCAGGAGACACCCCGTCTCAAAAGATGAGGTTACAGGA  1100
       |||||||||||||||||||  | ||||||||||  |||| |||| ||  
seq2  GCAGCCAGGTCTGCAGGAGAACCTCCGTCTCAAAGAATGA-GTTA-AG--  1091

seq1  ATAGAGGAAGACACCCAACAGTGACCTTT-GACCTCTGC  1138
      ||||||||||||||||||| || |||||| |||||||||
seq2  ATAGAGGAAGACACCCAACGGT-ACCTTTGGACCTCTGC  1129