BAC Information

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BAC

Clone NameB6Ng01-168M23
Chromosome2 (Build37)
Map Location 33,569,722 - 33,730,139
singlet/doubletdoublet
Overlap gene2610528K11Rik
Upstream geneSh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M23.bB6Ng01-168M23.g
ACCDH959953DH959954
length5471,042
definitionDH959953|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M23, 5' end.DH959954|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,569,722 - 33,570,274)(33,729,093 - 33,730,139)
sequence
ttccttgggggaccttgttgagtgatttgtttaaggctttggtgggtatg
attttgcaaaaacacagagccagtccatcacggtatttaaaattcttaaa
atgaatttggtgcttaaaaggccagagtactaaatacatttacatatgtt
caaacacaatatcataagcagtgaatccacagtgcctttatttttctatt
ttttttttaagggtaaaacttttctaggtggcgaaatttcccagttggca
gaaaaggaatgtggtgacatattgttattactgagtgaagcctcttagaa
acacatttgacttcaagaaacaacccatccacacgatgagagagagagag
agagagagagagagagagagagagagagaataagactttaccaatagcta
tttaaaaatctaatttattgcccacaggtaacaaacaactttatgtgaaa
atatcaaacccttggaaagaaatcactgtctatccatctcccttttgtgc
ctgcttcagcacccattctggacccagttatatctgcagataattat
gaattcttggtctgggttcagggtcagataaggccaggtaaggaatgtag
agctcactgaggctggctgccccaggattctcagtctacttgaaaccttg
ctcactcatgtaaacactgggtctgaattgtttgctctccacttcctttt
ccaaaccaggaccaagccaccatgcccgaagtcaaggagctttcagaagc
cttgccagagacaccgatggaccccatcacgggagttggggtggtggctt
cccggaaccgagcaccaacaggctacgacgtggtaagacacaatgcccac
ttgtctgttctgatctgtctactttggtccctgtgtggaaactatgcatc
ttccctctcagaacttaggatgaccagaagaggaaaatcatggccaagga
gtggttaggagtgggagtcggaacctgctgaggccatggcgcgtggggat
gatttcctggctctggctggcacaggcttttgacatctgtgatggtcatg
tttcacctgtaattagattcattgatttccaaagtcacctccagttttga
ctctccatgaagaggatttagggaagatcctgggagttgtcttgcattgt
cccaggagtataagtgttctgagtgtggtgttcttgcccatagccagcag
ggaacttgtagagtgattagcttagtgtgtggtgtggacaggaactttaa
gtccgggcttctcaagtcagggccaataatcaggaacttctttgtcatgg
gaccatcatgtgcatcattagctgtgtgcagcagcatccgtggcctctgc
ttggctgagatgaagacgttccgagatgttccctgagatgcttgtgaaga
gatggagaggatccttctccacgaagatttgcagctgggccggcctcctg
tcttcaaagcctagtcgggacgtctaactttccataaaatagaatcatta
gtatggctttgtgccataaaactcttggggaagctaataaaaatgctctg
atttgagagctgaagtgggttttgatgatgggtctgaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33569722_33570274
seq2: B6Ng01-168M23.b_45_597

seq1  GAATTCTTCCTTGGGGGACCTTGTTGAGTGATTTGTTTAAGGCTTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTGGGGGACCTTGTTGAGTGATTTGTTTAAGGCTTTGGTG  50

seq1  GGTATGATTTTGCAAAAACACAGAGCCAGTCCATCACGGTATTTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGATTTTGCAAAAACACAGAGCCAGTCCATCACGGTATTTAAAATT  100

seq1  CTTAAAATGAATTTGGTGCTTAAAAGGCCAGAGTACTAAATACATTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGAATTTGGTGCTTAAAAGGCCAGAGTACTAAATACATTTACA  150

seq1  TATGTTCAAACACAATATCATAAGCAGTGAATCCACAGTGCCTTTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAAACACAATATCATAAGCAGTGAATCCACAGTGCCTTTATTTT  200

seq1  TCTATTTTTTTTTTAAGGGTAAAACTTTTCTAGGTGGCGAAATTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTTTTAAGGGTAAAACTTTTCTAGGTGGCGAAATTTCCCAG  250

seq1  TTGGCAGAAAAGGAATGTGGTGACATATTGTTATTACTGAGTGAAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAAAAGGAATGTGGTGACATATTGTTATTACTGAGTGAAGCCTC  300

seq1  TTAGAAACACATTTGACTTCAAGAAACAACCCATCCACACGATGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACATTTGACTTCAAGAAACAACCCATCCACACGATGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAGACTTTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAGACTTTACCAA  400

seq1  TAGCTAGTTAAAAATCTAATTTATTGCCCACAGGTAACAAACAACAATAT  450
      |||||| ||||||||||||||||||||||||||||||||||||||  |||
seq2  TAGCTATTTAAAAATCTAATTTATTGCCCACAGGTAACAAACAACTTTAT  450

seq1  GTGAAAATATCAAACCCTTGGAAAGAAATCACTGCCCATCCATCTCCCTT  500
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  GTGAAAATATCAAACCCTTGGAAAGAAATCACTGTCTATCCATCTCCCTT  500

seq1  TCGTGCCTGCTTCTGCTCTCATTCTGGCCCCAGTTGTATCTGCAGATAAT  550
      | ||||||||||| || | |||||||| ||||||| ||||||||||||||
seq2  TTGTGCCTGCTTCAGCACCCATTCTGGACCCAGTTATATCTGCAGATAAT  550

seq1  TAT  553
      |||
seq2  TAT  553

seq1: chr2_33729093_33730139
seq2: B6Ng01-168M23.g_68_1109 (reverse)

seq1  CCACCTCAGACCCAATTCATCAAAACACACTTCAGCTTCTCAAATCAGGA  50
      ||||||||||||||  |||||||||| ||||||||| |||||||||| ||
seq2  CCACCTCAGACCCA--TCATCAAAACCCACTTCAGC-TCTCAAATCA-GA  46

seq1  GCATTTTTATTAGCTTCCCCAAGAGTTTTATGGCACAAAGCCATACCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCATTTTTATTAGCTTCCCCAAGAGTTTTATGGCACAAAGCCATA-CTAA  95

seq1  TGATTCTATTTTATGGAAAGTTAGACGTCCCGACTAGGCTTTGAAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTATTTTATGGAAAGTTAGACGTCCCGACTAGGCTTTGAAGACAG  145

seq1  GAGGCCGG-CCAGCTGCAAATCTTCGTGGAGAAGGATCCTCTCCATCTCT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGCCCAGCTGCAAATCTTCGTGGAGAAGGATCCTCTCCATCTCT  195

seq1  TCACAAGCATCTCAGGGAACATCTCGGAACGTCTTCATCTCAGCCAAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCATCTCAGGGAACATCTCGGAACGTCTTCATCTCAGCCAAGCA  245

seq1  GAGGCCACGGATGCTGCTGCACACAGCTAATGATGCACATGATGGTCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACGGATGCTGCTGCACACAGCTAATGATGCACATGATGGTCCCA  295

seq1  TGACAAAGAAGTTCCTGATTATTGGCCCTGACTTTGAGAAGCCCGGACTT  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACAAAGAAGTTCCTGATTATTGGCCCTGAC-TTGAGAAGCCCGGACTT  344

seq1  AAAGTTCCTGTCCACACCACACACTAAGCTAATCACTCTACAAGTTCCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGTCCACACCACACACTAAGCTAATCACTCTACAAGTTCCCT  394

seq1  GCTGGCTATGGGCAAGAACACCACACTCAGAACACTTATACTCCTGGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTATGGGCAAGAACACCACACTCAGAACACTTATACTCCTGGGAC  444

seq1  AATGCAAGACAACTCCCAGGATCTTCCCTAAATCCTCTTCATGGAGAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGACAACTCCCAGGATCTTCCCTAAATCCTCTTCATGGAGAGTC  494

seq1  AAAACTGGAGGTGACTTTGGAAATCAATGAATCTAATTACAGGTGAAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGGTGACTTTGGAAATCAATGAATCTAATTACAGGTGAAACA  544

seq1  TGACCATCACAGATGTCAAAAGCCTGTGCCAGCCAGAGCCAGGAAATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCACAGATGTCAAAAGCCTGTGCCAGCCAGAGCCAGGAAATCAT  594

seq1  CCCCACGCGCCATGGCCTCAGCAGGTTCCGACTCCCACTCCTAACCACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGCGCCATGGCCTCAGCAGGTTCCGACTCCCACTCCTAACCACTC  644

seq1  CTTGGCCATGATTTTCCTCTTCTGGTCATCCTAAGTTCTGAGAGGGAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCATGATTTTCCTCTTCTGGTCATCCTAAGTTCTGAGAGGGAAGA  694

seq1  TGCATAGTTTCCACACAGGGACCAAAGTAGACAGATCAGAACAGACAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTTTCCACACAGGGACCAAAGTAGACAGATCAGAACAGACAAGT  744

seq1  GGGCATTGTGTCTTACCACGTCGTAGCCTGTTGGTGCTCGGTTCCGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGTGTCTTACCACGTCGTAGCCTGTTGGTGCTCGGTTCCGGGAA  794

seq1  GCCACCACCCCAACTCCCGTGATGGGGTCCATCGGTGTCTCTGGCAAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCCCAACTCCCGTGATGGGGTCCATCGGTGTCTCTGGCAAGGC  844

seq1  TTCTGAAAGCTCCTTGACTTCGGGCATGGTGGCTTGGTCCTGGTTTGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGCTCCTTGACTTCGGGCATGGTGGCTTGGTCCTGGTTTGGAA  894

seq1  AAGGAAGTGGAGAGCAAACAATTCAGACCCAGTGTTTACATGAGTGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTGGAGAGCAAACAATTCAGACCCAGTGTTTACATGAGTGAGCA  944

seq1  AGGTTTCAAGTAGACTGAGAATCCTGGGGCAGCCAGCCTCAGTGAGCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAAGTAGACTGAGAATCCTGGGGCAGCCAGCCTCAGTGAGCTCT  994

seq1  ACATTCCTTACCTGGCCTTATCTGACCCTGAACCCAGACCAAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTACCTGGCCTTATCTGACCCTGAACCCAGACCAAGAATTC  1042