BAC Information

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BAC

Clone NameB6Ng01-168O09
Chromosome2 (Build37)
Map Location 135,620,638 - 135,621,837
singlet/doubletsinglet
Overlap genePlcb4
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O09.bB6Ng01-168O09.g
ACCDH960017DH960018
length1,2361,186
definitionDH960017|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O09, 5' end.DH960018|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccattgcatctgtctgggtctgaatgtctctagtcaggaggtt
ttgtaaattgctcttaatcttgttgcttgttagagatctgtttggtttgt
ttttctgatcttagtatatttttgattggccgtatgtatcgagaaattaa
ttggtttcttttagatctccctacttagtagaatatatgttctttaaggt
gtgtcttacagattttccaaactttaccaatacctgttgtaatgacttat
ttcatttagagtattgatggaaaggtatagattctattcttttattaatt
tgttctggttagtttgactaagcttgccaatttgtttaaccttttatcaa
ggtcaactctttaatattacatcagttccttatattgtttttatcgtttc
catttcattaatttctgccctcatcttaagttacttcctttctggttcag
ggtttggctcgttcctgttttctaaggtcctaagatataggttacactgt
ttatttgaaatcctccatttttcagtgtaggctcttagagctctatctat
ctaagccggtcttagggctcctttcattgaattttgtaggtttcacattg
tccttttcattcatttttagggactttgagctttctctcccgatttctcc
agtgatccatccatctccatgtttgtgcatgctctgcagtttctcttgct
gttcatttgtattttatttgtgatcatacaagttacaaagaattattcca
gtttccccgtgtttgttaagacttgcttcatttcctaagaggtgacctat
ttcagagaatgttccataggctacagagaagcacgtgtgtaccataatga
ttggcggacatccctgtagctgttccgtccatttgatgtatgctgttgtc
atttaactgagatgtctccctgcttattttctgtctgatgtgagctgggt
acagaagtcacccattattactggttgcagtttacaggtgtttgtttaca
aagttacttgcgtgccagtgctcaggcatatatgtttaagaattgtaata
ttttttggtgaatctccctccttcaatggaagtgctccttctactcttta
attgttattgaaagggcatttgtttcgcacggattcagttggcttcggtc
aattccttgcatccaatgcattcttttctcctaggcattgcagatgtagg
agttctagtaacacaccaggattcggtttttataac
gaattccattcctaggagatagaaaaaagtggaacctggaggcttgctag
ctagacacccaatgagttccgcatgtggtataggcccgaaaacccactaa
gcaaagctattttttctcctacccaaaagaacaaacctgcatctggataa
agatttaacattccaggtaggttggccaggtatctggacaacagaccacc
catcagaaatgtagattctcttaccaccatgttaaagagatggaaggaat
aattaaccctttaatgaaagaatgtattccttttccttcacagaaaactc
acctcagctgctacagagctgggcatgtctgggtagctgccaagatttac
agtttgcctatcttgtgactttttaaaaactctaataaaattgttctaga
gcttccttctattaggtattaaaacactgaacgaggacctcaattcctct
aatagcatgtagcatgccagatgggctccaaaaaaactgctggtaatata
ggtacggtgagagatgctgtctcagaaacatcagatggagggtgataaaa
gatgtcactcagtgtctactgctggcctccccacatgagcacgtgagtgc
acacatggatgtacacatgcacacatatacaagtaagcaaataaaccatg
cagacatacatacaaaaaaaatgccgattcgtggtatctcaatatggtat
aaaaagtgagaatcattgcaatctcctcaactcattttacagtgttatac
tattaagccactaacatattcttgctgttttggagattaaggaaagacct
gagtaaatctatacaactgaaatacagagatgacctggtactaggacaaa
aattccttctaaaactttccatataaatacaaataatactcacatgccta
caaataataatcataagactttaaataaatagtataaaatctatatagtc
aaactcattagtgtaataaatcaatagttatataactgtatatagtccac
taaagacacattttataatataaagcaatttctagtacactaataattca
aacttaacagaaaaagattatctgccattttataaaactgagactcaaat
atacagacagccacacgcaatttacaaggttataattgattacaatatag
ctattcatgcgcgttccatttcagtttccagtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_135620638_135621837
seq2: B6Ng01-168O09.g_70_1255 (reverse)

seq1  GCAAACTTGGAAACTGAAAATTGGAACTGCGCATGAAATAGCTATATTGT  50
      |||||| ||||||||||||  |||||| ||||||| ||||||||||||||
seq2  GCAAAC-TGGAAACTGAAA--TGGAAC-GCGCATG-AATAGCTATATTGT  45

seq1  AATCAAATTATTAACTTTTGTAAATATGC-TGTTGCTGTCTGTAATAATT  99
      |||| |||||| | |  |||||||| ||| ||| ||||||||| |||  |
seq2  AATC-AATTATAACC--TTGTAAAT-TGCGTGTGGCTGTCTGT-ATA--T  88

seq1  TTGAGTCTCAGTTTTATAAAATGGCAGATAATC-TTTTCTGTTAAGTTTG  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGAGTCTCAGTTTTATAAAATGGCAGATAATCTTTTTCTGTTAAGTTTG  138

seq1  AATTATTAGTGTACTTAGAAAATTGCTTTATATTATAAAATGTGTCTTTA  198
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  AATTATTAGTGTAC-TAG-AAATTGCTTTATATTATAAAATGTGTCTTTA  186

seq1  GTGGACTATATACAGTTATATAACTATTGATTTATTACACTAATGAGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTATATACAGTTATATAACTATTGATTTATTACACTAATGAGTTT  236

seq1  GACTATATTAGATTTTATACTATTTATTTTAAAGTCTTATGATTATTATT  298
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  GACTATA-TAGATTTTATACTATTTA-TTTAAAGTCTTATGATTATTATT  284

seq1  TGTAGGCATGTGAGTATTATTTGTATTTATATGGAAAGTTTTAGAAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCATGTGAGTATTATTTGTATTTATATGGAAAGTTTTAGAAGGAA  334

seq1  TTTTTGTCCTAGTACCAGGTCATCTCTGTATTTCAGTTGTATAGATTTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCCTAGTACCAGGTCATCTCTGTATTTCAGTTGTATAGATTTAC  384

seq1  TCAGGTCTTTCCTTAATCTCCAAAACAGCAAGAATATGTTAGTGGCTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTTCCTTAATCTCCAAAACAGCAAGAATATGTTAGTGGCTTAA  434

seq1  TAGTATAACACTGTAAAATGAGTTGAGGAGATTGCAATGATTCTCACTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAACACTGTAAAATGAGTTGAGGAGATTGCAATGATTCTCACTTT  484

seq1  TTATACCATATTGAGATACCACGAATCGGCATTTTTTTTGTATGTATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCATATTGAGATACCACGAATCGGCATTTTTTTTGTATGTATGTC  534

seq1  TGCATGGTTTATTTGCTTACTTGTATATGTGTGCATGTGTACATCCATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTTTATTTGCTTACTTGTATATGTGTGCATGTGTACATCCATGT  584

seq1  GTGCACTCACGTGCTCATGTGGGGAGGCCAGCAGTAGACACTGAGTGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTCACGTGCTCATGTGGGGAGGCCAGCAGTAGACACTGAGTGACA  634

seq1  TCTTTTATCACCCTCCATCTGATGTTTCTGAGACAGCATCTCTCACCGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCACCCTCCATCTGATGTTTCTGAGACAGCATCTCTCACCGTA  684

seq1  CCTATATTACCAGCAGTTTTTTTGGAGCCCATCTGGCATGCTACATGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTACCAGCAGTTTTTTTGGAGCCCATCTGGCATGCTACATGCTA  734

seq1  TTAGAGGAATTGAGGTCCTCGTTCAGTGTTTTAATACCTAATAGAAGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAATTGAGGTCCTCGTTCAGTGTTTTAATACCTAATAGAAGGAA  784

seq1  GCTCTAGAACAATTTTATTAGAGTTTTTAAAAAGTCACAAGATAGGCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGAACAATTTTATTAGAGTTTTTAAAAAGTCACAAGATAGGCAAA  834

seq1  CTGTAAATCTTGGCAGCTACCCAGACATGCCCAGCTCTGTAGCAGCTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATCTTGGCAGCTACCCAGACATGCCCAGCTCTGTAGCAGCTGAG  884

seq1  GTGAGTTTTCTGTGAAGGAAAAGGAATACATTCTTTCATTAAAGGGTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTTCTGTGAAGGAAAAGGAATACATTCTTTCATTAAAGGGTTAA  934

seq1  TTATTCCTTCCATCTCTTTAACATGGTGGTAAGAGAATCTACATTTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTCCATCTCTTTAACATGGTGGTAAGAGAATCTACATTTCTGA  984

seq1  TGGGTGGTCTGTTGTCCAGATACCTGGCCAACCTACCTGGAATGTTAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTCTGTTGTCCAGATACCTGGCCAACCTACCTGGAATGTTAAAT  1034

seq1  CTTTATCCAGATGCAGGTTTGTTCTTTTGGGTAGGAGAAAAAATAGCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCAGATGCAGGTTTGTTCTTTTGGGTAGGAGAAAAAATAGCTTT  1084

seq1  GCTTAGTGGGTTTTCGGGCCTATACCACATGCGGAACTCATTGGGTGTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGGGTTTTCGGGCCTATACCACATGCGGAACTCATTGGGTGTCT  1134

seq1  AGCTAGCAAGCCTCCAGGTTCCACTTTTTTCTATCTCCTAGGAATGGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAAGCCTCCAGGTTCCACTTTTTTCTATCTCCTAGGAATGGAAT  1184

seq1  TC  1200
      ||
seq2  TC  1186