BAC Information

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BAC

Clone NameB6Ng01-169A18
Chromosome2 (Build37)
Map Location 172,952,605 - 173,129,247
singlet/doubletdoublet
Overlap genePck1, Zbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A18.bB6Ng01-169A18.g
ACCDH960128DH960129
length9781,110
definitionDH960128|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A18, 5' end.DH960129|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,952,605 - 172,953,481)(173,128,112 - 173,129,247)
sequence
gaattcacctcttgtgcaggacacattcagggataaagggttgagggaca
atgctctctctgacagcaaatagctttctgtccggcttgctcttatgaga
gcttgccaggaagctgggaagaaaagaaagaacgagcggacagcagccag
gaaactggaagagcaggaggaagggaagaggctttggaacctggctctgc
gctgctgagcttggccacagctctcaaggagagggagagaggtggcttac
ttcagctggcctcagtgtgattgccccagattaggaaaccgccctgagga
catcctggcgggtaggagggggacgatgatcgatgattggtccctgagag
ctgtacactatgcgttacagaggaggtgggcttggggatgtggctcattt
ggtaaagcaactttacttagcttgcacagacccctggctcccattgctag
ctagcactgtgtaagctagatgtggtaggcagtacacagctctgatccca
gcactcaggaggtggagacaggagggtctgaagttcaaggtcatttcctg
gtacctagtgagctccaggccagcctgggctacttgaggccctgtctcaa
gaagagaaagagaaagaaaaggaaaaagaaaaagaaaaagaaaaagaaaa
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaggaggagcatg
tcataggttgtttctctctgcaccttagtctgtgtctgtgtctgtgtctg
tgtctgtgtctgtatgtgtgtctgtgtctgtgtctgtgtctgtgtctgtg
tctgtgtctgtgtctgtgtctgtgtctgtgtctgtctctgtgtctgtgtc
tgtctctgtgtctgtgtctgtctctgtctctgtctctgtctctgtgtctg
tgtctgtgtctgtttctatgtctgtgtctgtgtctctgtctctgtctgtg
tctgtgtctctgtctatgtctctgtctc
gaattccacctgcattacatttttaaacatgggcactggaaatgtttgaa
tgaaaatgtatctagggccattttatagacgaagacactgaaggcacaga
gagtggatcaggacaggaggcagctccagggatcaccacagttacacttt
gcagttcctaggcctgtgcggagagcttccaattgctggtcgtggtgggg
tgcattggaaccttgcctctctggtggagcctgcacagctggagttcggg
ccccacccctttcatacagccccgcccctttctcacagtcccacccctct
ccccgaccccactccacctgcagcctctggcccaggatcctgtctctgaa
aaggggactctctgctgggggcgtttgtacttttccttgcctttcgattt
acctcaactgctctttgtatgttctagaacactccatccactttctagta
gattctgcattctttccttgggcaaagcagtctaattaggaagattctgc
aataggtgggaatattattaaggcacttagaggttcttaacaccttccat
gagcacactgtcgcctgtcgcgcctaatcgccttaccgccattagagttg
cattagcagccagaccgagattttgcactgtgaaagatcagtacgttgag
aaaactcatagactacagagctgagagtcacagctacagagtcagctcta
ctctcactcttcagacagactctagtgtcctcgatcccctcacactgccg
tttcacattcccaagcctgacttttcagtgggtttctagaacactggcct
gagtgtctggacttgtgccaggtagatgtggttctcccatttgcatgctg
ggtaatggtagggcagtgatgtcatcatggtttgcagacagtggcatgga
gtagatgcacaacacagagatgagagggacaggaagagatcctgtctgct
tggacagagcaaagccattccagggatatggtctctcaagttccctcaga
atgtgtgtagtagaaacagcttaagagtagtgtttactgttactcccgac
tagaatcactgggagaagcctctgcttagcctctgggagatatgggttaa
ttgactggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172952605_172953481
seq2: B6Ng01-169A18.b_45_921

seq1  GAATTCACCTCTTGTGCAGGACACATTCAGGGATAAAGGGTTGAGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTTGTGCAGGACACATTCAGGGATAAAGGGTTGAGGGACA  50

seq1  ATGCTCTCTCTGACAGCAAATAGCTTTCTGTCCGGCTTGCTCTTATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCTCTGACAGCAAATAGCTTTCTGTCCGGCTTGCTCTTATGAGA  100

seq1  GCTTGCCAGGAAGCTGGGAAGAAAAGAAAGAACGAGCGGACAGCAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCAGGAAGCTGGGAAGAAAAGAAAGAACGAGCGGACAGCAGCCAG  150

seq1  GAAACTGGAAGAGCAGGAGGAAGGGAAGAGGCTTTGGAACCTGGCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGAAGAGCAGGAGGAAGGGAAGAGGCTTTGGAACCTGGCTCTGC  200

seq1  GCTGCTGAGCTTGGCCACAGCTCTCAAGGAGAGGGAGAGAGGTGGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGCTTGGCCACAGCTCTCAAGGAGAGGGAGAGAGGTGGCTTAC  250

seq1  TTCAGCTGGCCTCAGTGTGATTGCCCCAGATTAGGAAACCGCCCTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGGCCTCAGTGTGATTGCCCCAGATTAGGAAACCGCCCTGAGGA  300

seq1  CATCCTGGCGGGTAGGAGGGGGACGATGATCGATGATTGGTCCCTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGCGGGTAGGAGGGGGACGATGATCGATGATTGGTCCCTGAGAG  350

seq1  CTGTACACTATGCGTTACAGAGGAGGTGGGCTTGGGGATGTGGCTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACTATGCGTTACAGAGGAGGTGGGCTTGGGGATGTGGCTCATTT  400

seq1  GGTAAAGCAACTTTACTTAGCTTGCACAGACCCCTGGCTCCCATTGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCAACTTTACTTAGCTTGCACAGACCCCTGGCTCCCATTGCTAG  450

seq1  CTAGCACTGTGTAAGCTAGATGTGGTAGGCAGTACACAGCTCTGATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGTGTAAGCTAGATGTGGTAGGCAGTACACAGCTCTGATCCCA  500

seq1  GCACTCAGGAGGTGGAGACAGGAGGGTCTGAAGTTCAAGGTCATTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGTGGAGACAGGAGGGTCTGAAGTTCAAGGTCATTTCCTG  550

seq1  GTACCTAGTGAGCTCCAGGCCAGCCTGGGCTACTTGAGGCCCTGTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAGTGAGCTCCAGGCCAGCCTGGGCTACTTGAGGCCCTGTCTCAA  600

seq1  GAAGAGAAAGAGAAAGAAAAGGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGAGAAAGAAAAGGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  650

seq1  AGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAGGAGGAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAGGAGGAGCATG  700

seq1  TCATAGGTTGTTTCTCTCTGCACCTTAGTCTGTGTCTGTGTCTGTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGTTGTTTCTCTCTGCACCTTAGTCTGTGTCTGTGTCTGTGTCTG  750

seq1  TGTCTGTGTCTGTATGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTCTGTATGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTG  800

seq1  TCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTCTGTGTCTGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTCTGTGTCTGTGTC  850

seq1  TGTCTCTGTGTCTGTGTCTGTCTCTGT  877
      |||||||||||||||||||||||||||
seq2  TGTCTCTGTGTCTGTGTCTGTCTCTGT  877

seq1: chr2_173128112_173129247
seq2: B6Ng01-169A18.g_68_1177 (reverse)

seq1  TTCCAGCTCAATTAAACACAATAATCTCCCAGAGGCATAAGCAGAGGCCT  50
      |||||| |||||| ||| ||   ||||||||||||| |||||||||||  
seq2  TTCCAG-TCAATT-AACCCA--TATCTCCCAGAGGC-TAAGCAGAGGC--  43

seq1  GTCTCCCAAGTGATTCTAGGTTCTGTGAAGTTAACAGTTAACACTAACTC  100
       |||||| |||||||||||    |  | || ||||||| |||||| ||||
seq2  TTCTCCC-AGTGATTCTAG----TCGGGAG-TAACAGTAAACACT-ACTC  86

seq1  TATAGCCTGTTTCCTTACTACACACCATGTCTTGAGGGAACCTTGAGAAG  150
      | ||  |||||||  ||||||||| ||| || |||||||| |||||| ||
seq2  T-TAAGCTGTTTC--TACTACACA-CAT-TC-TGAGGGAA-CTTGAG-AG  128

seq1  ACCATATCCCTGGAATGGCTTCTGCTCTGGTCCAAGCAGACAGGATCTCT  200
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  ACCATATCCCTGGAATGGCTT-TGCTCT-GTCCAAGCAGACAGGATCTCT  176

seq1  TCCTGTCCCTCTCATCTTCTGTGTTGTGCATCTACCTCCATGCCACTGTC  250
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TCCTGTCCCTCTCATC-TCTGTGTTGTGCATCTA-CTCCATGCCACTGTC  224

seq1  TGCAAACCATGATGACATCACTGCCCTACCATTACCCAGCATGCAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCATGATGACATCACTGCCCTACCATTACCCAGCATGCAAATGG  274

seq1  GAGAACCACATCTACCTGGCACAAGTCCAGACACTCAGGCCAGTGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCACATCTACCTGGCACAAGTCCAGACACTCAGGCCAGTGTTCTA  324

seq1  GAAACCCACTGAAAAGTCAGGCTTGGGAATGTGAAACGGCAGTGTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCACTGAAAAGTCAGGCTTGGGAATGTGAAACGGCAGTGTGAGGG  374

seq1  GATCGAGGACACTAGAGTCTGTCTGAAGAGTGAGAGTAGAGCTGACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGAGGACACTAGAGTCTGTCTGAAGAGTGAGAGTAGAGCTGACTCTG  424

seq1  TAGCTGTGACTCTCAGCTCTGTAGTCTATGAGTTTTCTCAACGTACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGACTCTCAGCTCTGTAGTCTATGAGTTTTCTCAACGTACTGAT  474

seq1  CTTTCACAGTGCAAAATCTCGGTCTGGCTGCTAATGCAACTCTAATGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAGTGCAAAATCTCGGTCTGGCTGCTAATGCAACTCTAATGGCG  524

seq1  GTAAGGCGATTAGGCGCGACAGGCGACAGTGTGCTCATGGAAGGTGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCGATTAGGCGCGACAGGCGACAGTGTGCTCATGGAAGGTGTTAA  574

seq1  GAACCTCTAAGTGCCTTAATAATATTCCCACCTATTGCAGAATCTTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTAAGTGCCTTAATAATATTCCCACCTATTGCAGAATCTTCCTA  624

seq1  ATTAGACTGCTTTGCCCAAGGAAAGAATGCAGAATCTACTAGAAAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTGCTTTGCCCAAGGAAAGAATGCAGAATCTACTAGAAAGTGGA  674

seq1  TGGAGTGTTCTAGAACATACAAAGAGCAGTTGAGGTAAATCGAAAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTTCTAGAACATACAAAGAGCAGTTGAGGTAAATCGAAAGGCAA  724

seq1  GGAAAAGTACAAACGCCCCCAGCAGAGAGTCCCCTTTTCAGAGACAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTACAAACGCCCCCAGCAGAGAGTCCCCTTTTCAGAGACAGGAT  774

seq1  CCTGGGCCAGAGGCTGCAGGTGGAGTGGGGTCGGGGAGAGGGGTGGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCAGAGGCTGCAGGTGGAGTGGGGTCGGGGAGAGGGGTGGGACT  824

seq1  GTGAGAAAGGGGCGGGGCTGTATGAAAGGGGTGGGGCCCGAACTCCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGGGGCGGGGCTGTATGAAAGGGGTGGGGCCCGAACTCCAGCT  874

seq1  GTGCAGGCTCCACCAGAGAGGCAAGGTTCCAATGCACCCCACCACGACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCTCCACCAGAGAGGCAAGGTTCCAATGCACCCCACCACGACCA  924

seq1  GCAATTGGAAGCTCTCCGCACAGGCCTAGGAACTGCAAAGTGTAACTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGAAGCTCTCCGCACAGGCCTAGGAACTGCAAAGTGTAACTGTG  974

seq1  GTGATCCCTGGAGCTGCCTCCTGTCCTGATCCACTCTCTGTGCCTTCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCCTGGAGCTGCCTCCTGTCCTGATCCACTCTCTGTGCCTTCAGT  1024

seq1  GTCTTCGTCTATAAAATGGCCCTAGATACATTTTCATTCAAACATTTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGTCTATAAAATGGCCCTAGATACATTTTCATTCAAACATTTCCA  1074

seq1  GTGCCCATGTTTAAAAATGTAATGCAGGTGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATGTTTAAAAATGTAATGCAGGTGGAATTC  1110