BAC Information

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BAC

Clone NameB6Ng01-169C17
Chromosome2 (Build37)2 (Build37)
Map Location 142,776,681 - 142,777,69822,068,774 - 22,069,928
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C17.bB6Ng01-169C17.g
ACCDH960217DH960218
length9391,159
definitionDH960217|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C17, 5' end.DH960218|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,681 - 142,777,698)(22,068,774 - 22,069,928)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccaagatat
gaattctcttcatttgacttcaggagcattctagaaaatagccctagagc
tatagctgtccacttcaggaaaagtgcctgtatatcatataaaaccatat
ttagataaagtttaaaatttctcacctgtccactgatggtagggaagttt
atgtgacggtagaagttctggttactcgagaagtatagaagctgtgggga
caatggatgattttctttttatttatctttctcatgcatcaaggatttga
tgctggaatgataattgtgtaagtctagcttcatggcctgcaagacatgc
ctgaaaatacagcttcttccgtgtataaaacaggataaagtaaatggtag
ataaatataacgagcataataaaaagcagtaacaagagcagtgataacac
atgtgatgtcaactgacttcatctagaataatctaaaaacctaagatgct
tggtactcctatgtgattttttttaatcagaatatttaaggcatgaagaa
ctatgataaacctgggccacagcttctggtggcagcccacagaggaggaa
atagaagaaggaaactttgtttttttgtctgcttgttcttgctctcaatg
gcgtattcatctaccctgttgctgaggcaatcctaacccagtattaaaat
caattttttgagattccaatataaactgaagatcaacagccctccaggaa
ccctctgagatttcagcatcggaatgggactgctgaaacgattagacttg
tagcctaaacagtttctagattcttggcctttctatctttccattatgaa
agagtcattgttgaacttcccagacatatcctatcaattatactccttta
gcgaaccctaatacatgcactataaaatgaagaatgcaatgtagttatat
tgtgtggacataggagatttaaatccagtgctcattcttcccactacatg
ttcttggctccagggaaaagtagacatagagttccagaagatgctatggc
tcacttggaatggacctacattccattcaattagaaagcaaacaggtggt
ttgtggtttgttagcagaatattgaatccacaagttcccacatagaattc
ttctttttaaagcttgggaatctgaataaaccagaaagtttggcattgta
gtgttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776681_142777698
seq2: B6Ng01-169C17.b_50_607 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGT  150

seq1  AGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGCGAATTGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATC  550
      |||||||||||||||||||||||||||||||||||||||| ||       
seq2  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA-------  543

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  600
           ||| |||||    |||                             
seq2  ---CTGAACAAAGA----ATTC----------------------------  558

seq1  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  650
                                                        
seq2  --------------------------------------------------  558

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  700
                                                        
seq2  --------------------------------------------------  558

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  750
                                                        
seq2  --------------------------------------------------  558

seq1  GGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAA  800
                                                        
seq2  --------------------------------------------------  558

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  850
                                                        
seq2  --------------------------------------------------  558

seq1  ACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTAC  900
                                                        
seq2  --------------------------------------------------  558

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  950
                                                        
seq2  --------------------------------------------------  558

seq1  AGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  1000
                                                        
seq2  --------------------------------------------------  558

seq1  GAACTGAACAAAGAATTC  1018
                        
seq2  ------------------  558

seq1: chr2_22068774_22069928
seq2: B6Ng01-169C17.g_66_1224 (reverse)

seq1  AGGGA--ACTACAATGCCCAAACTTTCTGGTTTATTTCAGATT-CCAAGC  47
      |||||  ||||||||| ||||||||||||||||| |||||||| ||||||
seq2  AGGGAACACTACAATG-CCAAACTTTCTGGTTTA-TTCAGATTCCCAAGC  48

seq1  TTAAGGAAGAGGAATGCTAATGTGG--ACTTGT-GATTTCATA-TCTGCT  93
      || |  |||| |||| || ||||||  |||||| ||||  ||| ||||||
seq2  TTTAAAAAGAAGAATTCT-ATGTGGGAACTTGTGGATTCAATATTCTGCT  97

seq1  TACCAA-CACAGACCA-CTGTTTGCTGTTCTATGTGAATGGAATGTAGGT  141
       || || |||| |||| ||||||||| |||||  ||||||||||||||||
seq2  AACAAACCACAAACCACCTGTTTGCT-TTCTAATTGAATGGAATGTAGGT  146

seq1  CCATTCCAAGTGAGCCATAGCATCTTCTTGGAACTCTATGTCTACTTTTC  191
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATTCCAAGTGAGCCATAGCATCTTC-TGGAACTCTATGTCTACTTTTC  195

seq1  CCTGGAGCCAAGAACATGTAGTGGGAAGAATGAGCACTGGATTTAAATCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCAAGAACATGTAGTGGGAAGAATGAGCACTGGATTTAAATCT  245

seq1  CCTATGTCCACACAATATAACTACATTGCATTCTTCATTTTATAGTGCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCCACACAATATAACTACATTGCATTCTTCATTTTATAGTGCAT  295

seq1  GTATTAGGGTTCGCTAAAGGAGTATAATTGATAGGATATGTCTGGGAAGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGGTTCGCTAAAGGAGTATAATTGATAGGATATGTCTGGGAAGT  345

seq1  TCAACAATGACTCTTTCATAATGGAAAGATAGAAAGGCCAAGAATCTAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATGACTCTTTCATAATGGAAAGATAGAAAGGCCAAGAATCTAGA  395

seq1  AACTGTTTAGGCTACAAGTCTAATCGTTTCAGCAGTCCCATTCCGATGCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTAGGCTACAAGTCTAATCGTTTCAGCAGTCCCATTCCGATGCT  445

seq1  GAAATCTCAGAGGGTTCCTGGAGGGCTGTTGATCTTCAGTTTATATTGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCAGAGGGTTCCTGGAGGGCTGTTGATCTTCAGTTTATATTGGA  495

seq1  ATCTCAAAAAATTGATTTTAATACTGGGTTAGGATTGCCTCAGCAACAGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAAAATTGATTTTAATACTGGGTTAGGATTGCCTCAGCAACAGG  545

seq1  GTAGATGAATACGCCATTGAGAGCAAGAACAAGCAGACAAAAAAACAAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGAATACGCCATTGAGAGCAAGAACAAGCAGACAAAAAAACAAAG  595

seq1  TTTCCTTCTTCTATTTCCTCCTCTGTGGGCTGCCACCAGAAGCTGTGGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTCTATTTCCTCCTCTGTGGGCTGCCACCAGAAGCTGTGGCC  645

seq1  CAGGTTTATCATAGTTCTTCATGCCTTAAATATTCTGATTAAAAAAAATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATCATAGTTCTTCATGCCTTAAATATTCTGATTAAAAAAAATC  695

seq1  ACATAGGAGTACCAAGCATCTTAGGTTTTTAGATTATTCTAGATGAAGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAGTACCAAGCATCTTAGGTTTTTAGATTATTCTAGATGAAGTC  745

seq1  AGTTGACATCACATGTGTTATCACTGCTCTTGTTACTGCTTTTTATTATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACATCACATGTGTTATCACTGCTCTTGTTACTGCTTTTTATTATG  795

seq1  CTCGTTATATTTATCTACCATTTACTTTATCCTGTTTTATACACGGAAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTATATTTATCTACCATTTACTTTATCCTGTTTTATACACGGAAGA  845

seq1  AGCTGTATTTTCAGGCATGTCTTGCAGGCCATGAAGCTAGACTTACACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATTTTCAGGCATGTCTTGCAGGCCATGAAGCTAGACTTACACAA  895

seq1  TTATCATTCCAGCATCAAATCCTTGATGCATGAGAAAGATAAATAAAAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTCCAGCATCAAATCCTTGATGCATGAGAAAGATAAATAAAAAG  945

seq1  AAAATCATCCATTGTCCCCACAGCTTCTATACTTCTCGAGTAACCAGAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCCATTGTCCCCACAGCTTCTATACTTCTCGAGTAACCAGAAC  995

seq1  TTCTACCGTCACATAAACTTCCCTACCATCAGTGGACAGGTGAGAAATTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCGTCACATAAACTTCCCTACCATCAGTGGACAGGTGAGAAATTT  1045

seq1  TAAACTTTATCTAAATATGGTTTTATATGATATACAGGCACTTTTCCTGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATCTAAATATGGTTTTATATGATATACAGGCACTTTTCCTGA  1095

seq1  AGTGGACAGCTATAGCTCTAGGGCTATTTTCTAGAATGCTCCTGAAGTCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAGCTATAGCTCTAGGGCTATTTTCTAGAATGCTCCTGAAGTCA  1145

seq1  AATGAAGAGAATTC  1155
      ||||||||||||||
seq2  AATGAAGAGAATTC  1159