BAC Information

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BAC

Clone NameB6Ng01-169I02
Chromosome2 (Build37)
Map Location 167,040,706 - 167,041,861
singlet/doubletsinglet
Overlap genePtgis
Upstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1
Downstream geneLOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I02.bB6Ng01-169I02.g
ACCDH960467DH960468
length6691,119
definitionDH960467|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I02, 5' end.DH960468|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactttgtacacgaggctcgccctccaactcaaaaagatctgcct
gcctctgcaccccgtctcatgggtgatggaattaaaggcttatgccacta
tgcccagctttgttcttgttcttagatgtatttatttttacatctgtttg
agtgactgtacatatgaagatggcccacatttgtaccttggtgtactgcc
atgcaggtgctgggaaccaacttgggacctctgtctctctctctctctct
ctctctctctctctctctctctctctctctcacacactctctttgtttgt
gtctctgtgactgtgtgtgtgtttgttttgtttcccagagggcacactct
ctatctcccccccagcgcgtagagtttttgtgcgcgatctcgcactcgca
gtctatctgtgtttgtgtgtgtgtttatgtgtgcgtgtatatgtaaacaa
accctggcgctctctctgtaggtctcccggaagaaaatacatatctatcg
actgcgggggtctctctccaacaaccctcactcaagccatagcgagagag
aaggtacacggggtgtgtgcgaacctgacctctaaattaaatattttata
tatagagagagagagtctggcgctacgcgcgttagattcgaaaagataga
gagactgagaatcgcaaat
gaattccaggacagtttttaagtcagttgtatagccctgtgtggctggaa
aaacaaacaaacaaacaaacaaacacccgacacagtgggagtcctgggaa
agttttgtctcaggtgagcccatgagctcaatactttaaatctagactgc
cacatgactggaagtggtatgaagaagttgaacacattttctcaaaatgt
tgccatccaacttcaaaaacagtaagtcgaggctaggaaaaggtctgcag
agtgttggccacagagccacgggacctgagtttcgatcccagtgcctgta
acacctaagggctgtgtgtgtggtgatgcacctacagtcccagccctggg
ctctctgtttttaagtcagttggcagcatttgcaggccactgcaagcagc
attgccccgtaggcaaagattctctcccatacctgctcaggtctaggctg
gtgtccttgaggcaaagcttaccccttagagaccctgagatgcctttgtg
gcctgtgcaggctccaatgtcaaagtcacaaacataagaggaggctagag
tggaagggcccgatttctatccccagccccaggaactaaagacagatgga
cggagacagacagacacaggaacacctggattattggcttttttttctcc
cccatttggtttttcaagacagggtttctctgtgtagctctggctgtttt
ggaactcactctgtagaccaggctggccttgaatttacagagatctgcct
gcctctgcctcccaagtgttgggattaaaggcgtgcgctaccacacctgg
cccagattatcagttttccttagaaaatgtggtgtgtgcctgggtggagc
cacttgctccagtatgtctgagggtaggttggagcggcctggaggtctcc
ctctcttcagatctacatagcttcctctgtggatcttcctctgctgactt
actgtctgctctagagagtttgagtgagaccccagatctgtgtccccaca
atggcatgcagctctttcggatgctgagcccctgctttctgcaggttgct
tgcttgtctagtctcaggggagaggctgtgctcaggtgttcctcctatgc
tcaagcctcacactcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167040706_167041861
seq2: B6Ng01-169I02.g_65_1183 (reverse)

seq1  TGATGAGTGTGTGAGGCTTTATGAAGCCATTTAGGAGGACCACACTCGAG  50
      ||||||  ||||||||||| |  |       ||||||||  ||||  || 
seq2  TGATGA--GTGTGAGGCTTGAGCA-------TAGGAGGA--ACACCTGA-  38

seq1  GCACCAGCCTCTCCCCCTTGAGACCTAGACCAAAGCAAGGCCAGACCCTG  100
      ||| ||||||||||||  ||||| ||||||  |||||||     | ||||
seq2  GCA-CAGCCTCTCCCC--TGAGA-CTAGAC--AAGCAAG----CAACCTG  78

seq1  CACGAAAGGCAAGGGGGCTCAGCATCCCGGAAAGAGCTGCATTGGCCATT  150
      || |||| |||  ||||||||||||||  |||||||||||||  ||||||
seq2  CA-GAAA-GCA--GGGGCTCAGCATCC--GAAAGAGCTGCAT--GCCATT  120

seq1  GGTGGGGGACACAGATCTGGGGTCTCCACTCAAACTCCTCTAGAGCAGAC  200
      |   ||||||||||||||||||||| |||||||||| |||||||||||||
seq2  G--TGGGGACACAGATCTGGGGTCT-CACTCAAACT-CTCTAGAGCAGAC  166

seq1  AGGTAAGGTCAGCAGAGGAAGATTCCACAGAGGAAGCTATGTAGATCTGA  250
      | |||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  A-GTAA-GTCAGCAGAGGAAGA-TCCACAGAGGAAGCTATGTAGATCTGA  213

seq1  AGAGAGGGGAGACCTCCAGGCCGCTCCAACCTACCCTCAGACATACTGGA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGA-GGGAGACCTCCAGGCCGCTCCAACCTACCCTCAGACATACTGGA  262

seq1  GCAAGTGGCTCCACCCAGGCACACACCACATTTTCTAAGG-AAACTGATA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAAGTGGCTCCACCCAGGCACACACCACATTTTCTAAGGAAAACTGATA  312

seq1  ATCTGGGCCAGGTGTGGTAGCGCACGCCTTTAATCCCAACACTTGGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCCAGGTGTGGTAGCGCACGCCTTTAATCCCAACACTTGGGAGG  362

seq1  CAGAGGCAGGCAGATCTCTGTAAATTCAAGGCCAGCCTGGTCTACAGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATCTCTGTAAATTCAAGGCCAGCCTGGTCTACAGAGT  412

seq1  GAGTTCCAAAACAGCCAGAGCTACACAGAGAAACCCTGTCTTGAAAAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAAACAGCCAGAGCTACACAGAGAAACCCTGTCTTGAAAAACC  462

seq1  AAATGGGGGAGAAAAAAAAGCCAATAATCCAGGTGTTCCTGTGTCTGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGGAGAAAAAAAAGCCAATAATCCAGGTGTTCCTGTGTCTGTCT  512

seq1  GTCTCCGTCCATCTGTCTTTAGTTCCTGGGGCTGGGGATAGAAATCGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGTCCATCTGTCTTTAGTTCCTGGGGCTGGGGATAGAAATCGGGC  562

seq1  CCTTCCACTCTAGCCTCCTCTTATGTTTGTGACTTTGACATTGGAGCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACTCTAGCCTCCTCTTATGTTTGTGACTTTGACATTGGAGCCTG  612

seq1  CACAGGCCACAAAGGCATCTCAGGGTCTCTAAGGGGTAAGCTTTGCCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCACAAAGGCATCTCAGGGTCTCTAAGGGGTAAGCTTTGCCTCA  662

seq1  AGGACACCAGCCTAGACCTGAGCAGGTATGGGAGAGAATCTTTGCCTACG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCAGCCTAGACCTGAGCAGGTATGGGAGAGAATCTTTGCCTACG  712

seq1  GGGCAATGCTGCTTGCAGTGGCCTGCAAATGCTGCCAACTGACTTAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGCTGCTTGCAGTGGCCTGCAAATGCTGCCAACTGACTTAAAAA  762

seq1  CAGAGAGCCCAGGGCTGGGACTGTAGGTGCATCACCACACACACAGCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCCAGGGCTGGGACTGTAGGTGCATCACCACACACACAGCCCT  812

seq1  TAGGTGTTACAGGCACTGGGATCGAAACTCAGGTCCCGTGGCTCTGTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTACAGGCACTGGGATCGAAACTCAGGTCCCGTGGCTCTGTGGC  862

seq1  CAACACTCTGCAGACCTTTTCCTAGCCTCGACTTACTGTTTTTGAAGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCTGCAGACCTTTTCCTAGCCTCGACTTACTGTTTTTGAAGTTG  912

seq1  GATGGCAACATTTTGAGAAAATGTGTTCAACTTCTTCATACCACTTCCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAACATTTTGAGAAAATGTGTTCAACTTCTTCATACCACTTCCAG  962

seq1  TCATGTGGCAGTCTAGATTTAAAGTATTGAGCTCATGGGCTCACCTGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCAGTCTAGATTTAAAGTATTGAGCTCATGGGCTCACCTGAGA  1012

seq1  CAAAACTTTCCCAGGACTCCCACTGTGTCGGGTGTTTGTTTGTTTGTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTCCCAGGACTCCCACTGTGTCGGGTGTTTGTTTGTTTGTTTG  1062

seq1  TTTGTTTTTCCAGCCACACAGGGCTATACAACTGACTTAAAAACTGTCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCCAGCCACACAGGGCTATACAACTGACTTAAAAACTGTCCT  1112

seq1  GGAATTC  1156
      |||||||
seq2  GGAATTC  1119