BAC Information

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BAC

Clone NameB6Ng01-169N05
Chromosome2 (Build37)
Map Location 17,523,939 - 17,653,371
singlet/doubletdoublet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169N05.bB6Ng01-169N05.g
ACCDH960697DH960698
length1,124939
definitionDH960697|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N05, 5' end.DH960698|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,523,939 - 17,525,076)(17,652,427 - 17,653,371)
sequence
gaattcctctgagacagaaacggatcctggacacttttgctctttccccc
tttgtttcccaaactagagagatactaatgacccacccaccccaacccta
gtaaagaaatatcagcctaaaaaaggagaagcacagagatgtaggtagga
tagcataagacaggggcaaagggaaggctaccctgaaagaaacaattcac
atgcaagaattgtacagaatgttcaagaggccattacagctcattctgat
gactgatgcagtattcatgtccgcaaagacaaattactaaagggaaagat
gcaaatcaaactgccaaaaactcgcaggaaagtaaaaccttaaaaatata
tttgttgatgctgggtggtggtggtggcacctctctttaatcccaacact
cagaaggcagagtcaggagaatctctgagtgcaaattccaggatagccag
tgctatacagagaaaccatgtttcaacaacaaaacaaaaaaattatacac
acacacgcacacatgtgcacatacatgcatgcacacagagtgaaagtata
tgagagagtattttacatttcatcatgatcacagtggtcatcaaaccaca
tgtgttagtcaaaactcatatagccatattccaaaaaaatgaaccattat
gtatttttttaaatatttaacatttctttaactccatctgtgtatgcttg
tgcaatggcacatatggaggtcagaggacaacctgcagagccagtacttt
ttttctaggcgcaggtttgcatgtggcttggaggaaacatagttacctgc
taggcatctggcctatttttaaataattatattggggttttttttcaact
atttcctaattaatttagttggcatagaaaatacatttttattgtgacat
ttgcatacatattttatctaagtggtgctaaagtcaaacatacaatggaa
agaaaaacaaactgtagttttcagtgtgagtagaagaaacttcagtatta
cgagaaaaaataacaatggtgtgagagaaaagataagaattctgtgtaaa
ttcatcaacataatcagaaaatataactaaggtggtgcagatgaagagta
cctctatccttgtctccaaggaca
gaattcaggcaggcacgctactcattttctctgccgggtagtggtggaag
ctaggtggcccaaaggggtgtatgggggacttgagtctatcggtttctgt
gaacctcccagttccaggtcaagcgtcttttgttcaaggcacagaaaggc
tcttcgcaatcttgaccagtgtgctgtgcgctaccatgcagagctggacc
cttgagacgtaggaggagcttaggcacatccttggccgacctctgggtgt
cagggacatcaccctggagtgagaggaggggagagaggaaggggcctgga
agtgtgcgggtttgagcttttcccgagctcccgtcaccccagttctgacc
tcctccgcctggctccctttgtcgctgacgcccacctgggagccccggac
tgctgtggccgtgggtgtcggctccccaggcctcatgggtggctgcgtgt
ggagttctccgggtccctagtcttccctcccccccgcgccgtcctctgtc
ccttggtgccagacaggctggttttctgccctttgggtaggcgcgcgctg
gtgggtttggcctgcgcggcgacggcggcggcggcggcggcggcggggga
gcgagtgagcgagcgcaaggggcgggcgcgagtgcttgtgagtcaccggt
acctggagcgctagcgacgcagagccagcggcgcacagcccaagccggag
cctagtgccagcgtcgccgagcgcggcctgcccccttgcacctctccagg
ccagtttgacagcgcctgaagcccttctcctgccccgaggtggcgcgggg
ctcttcgggggatgtcacagcggctcctcggagcccctagttccgctgca
gcaacagccacgcccgcgggaaccgtcgacaatgattcccagttcgcccg
ctgcggaaagtgttgatccatcagaaaagtcaactgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_17523939_17525076
seq2: B6Ng01-169N05.b_48_1171

seq1  GAATTCCTCTGAGACAGAAACGGATCCTGGACACTTTTGCTCTTTCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAGACAGAAACGGATCCTGGACACTTTTGCTCTTTCCCCC  50

seq1  TTTGTTTCCCAAACTAGAGAGATACTAATGACCCACCCACCCCAACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCCAAACTAGAGAGATACTAATGACCCACCCACCCCAACCCTA  100

seq1  GTAAAGAAATATCAGCCTAAAAAAGGAGAAGCACAGAGATGTAGGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAATATCAGCCTAAAAAAGGAGAAGCACAGAGATGTAGGTAGGA  150

seq1  TAGCATAAGACAGGGGCAAAGGGAAGGCTACCCTGAAAGAAACAATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAGACAGGGGCAAAGGGAAGGCTACCCTGAAAGAAACAATTCAC  200

seq1  ATGCAAGAATTGTACAGAATGTTCAAGAGGCCATTACAGCTCATTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAATTGTACAGAATGTTCAAGAGGCCATTACAGCTCATTCTGAT  250

seq1  GACTGATGCAGTATTCATGTCCGCAAAGACAAATTACTAAAGGGAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGCAGTATTCATGTCCGCAAAGACAAATTACTAAAGGGAAAGAT  300

seq1  GCAAATCAAACTGCCAAAAACTCGCAGGAAAGTAAAACCTTAAAAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAAACTGCCAAAAACTCGCAGGAAAGTAAAACCTTAAAAATATA  350

seq1  TTTGTTGATGCTGGGTGGTGGTGGTGGCACCTCTCTTTAATCCCAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATGCTGGGTGGTGGTGGTGGCACCTCTCTTTAATCCCAACACT  400

seq1  CAGAAGGCAGAGTCAGGAGAATCTCTGAGTGCAAATTCCAGGATAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAGAGTCAGGAGAATCTCTGAGTGCAAATTCCAGGATAGCCAG  450

seq1  TGCTATACAGAGAAACCATGTTTCAACAACAAAACAAAAAAATTATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATACAGAGAAACCATGTTTCAACAACAAAACAAAAAAATTATACAC  500

seq1  ACACACGCACACATGTGCACATACATGCATGCACACAGAGTGAAAGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCACACATGTGCACATACATGCATGCACACAGAGTGAAAGTATA  550

seq1  TGAGAGAGTATTTTACATTTCATCATGATCACAGTGGTCATCAAACCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGTATTTTACATTTCATCATGATCACAGTGGTCATCAAACCACA  600

seq1  TGTGTTAGTCAAAACTCATATAGCCATATTCCAAAAAAATGAACCATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGTCAAAACTCATATAGCCATATTCCAAAAAAATGAACCATTAT  650

seq1  GTATTTTTTTAAATATTTAACATTTCTTTAACTCCATCTGTGTATGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTAAATATTTAACATTTCTTTAACTCCATCTGTGTATGCTTG  700

seq1  TGCAATGGCACATATGGAGGTCAGAGGACAACCTGCAGGAGCCAGTACTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCAATGGCACATATGGAGGTCAGAGGACAACCTGCA-GAGCCAGTACTT  749

seq1  TTTTTCTAGGCGCAGGTTTGCATGTGGCTTGGAGGAAACATAGTTACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGGCGCAGGTTTGCATGTGGCTTGGAGGAAACATAGTTACCTG  799

seq1  CTAGGCATCTGGCCTATTTTTAAATAATTATATTGGGGTTTTTTTTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATCTGGCCTATTTTTAAATAATTATATTGGGGTTTTTTTTCAAC  849

seq1  TATTTCCTAATTAAATTTAGTTGGCATAGAAAATACA-TTTTATTGTGAC  899
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TATTTCCTAATT-AATTTAGTTGGCATAGAAAATACATTTTTATTGTGAC  898

seq1  ATTTGCATACATATTTTATCTAAGTGGTTGCTAAAGTCAAACATACAATG  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTGCATACATATTTTATCTAAGTGG-TGCTAAAGTCAAACATACAATG  947

seq1  GAAAGAAAAACAAACTGTAGTTTTCAGTGTGAGGTAGAAGAAAACTCCAG  999
      |||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  GAAAGAAAAACAAACTGTAGTTTTCAGTGTGA-GTAGAAG-AAACTTCAG  995

seq1  TAATAACGAAGAAAAAAAATAAACAAT-GTGTGAGAGAAAAGATAAGAAA  1048
      || |    | || ||||||| |||||| ||||||||||||||||||||| 
seq2  TATT----ACGAGAAAAAAT-AACAATGGTGTGAGAGAAAAGATAAGAAT  1040

seq1  TCTGTGTAAAATCAATCAACATAATCAGAAAAATATAAACTAAAGTGGTG  1098
      |||||||||| || |||||||||||||| ||||||| |||||| ||||||
seq2  TCTGTGTAAATTC-ATCAACATAATCAG-AAAATAT-AACTAAGGTGGTG  1087

seq1  CCAGATGAAGAAGTACCTCCATCCTTGTCTCCAAAGGACA  1138
       ||||||||| |||||||| |||||||||||| |||||||
seq2  -CAGATGAAG-AGTACCTCTATCCTTGTCTCC-AAGGACA  1124

seq1: chr2_17652427_17653371
seq2: B6Ng01-169N05.g_67_1005 (reverse)

seq1  AGACAGTTGACTTTCTCTGTGGGATACACCACTTTTCCGCAGCGGGCGCA  50
      |||||||||||||| ||||  |||| || ||| ||||||||||||||| |
seq2  AGACAGTTGACTTT-TCTGATGGAT-CAACAC-TTTCCGCAGCGGGCGAA  47

seq1  CTGGGGATTCATTGTCG-CGGTTCCCGCGGGCGGTGGCTGTTGCTGCAGC  99
      || |||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  CT-GGGAATCATTGTCGACGGTTCCCGCGGGC-GTGGCTGTTGCTGCAGC  95

seq1  GGGAACTAGGGGCTCCGAGGAGCCGCTGTGACATCCCCCGAAGAGCCCCG  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGAACTAGGGGCTCCGAGGAGCCGCTGTGACATCCCCCGAAGAGCCCCG  144

seq1  CGCCACCTCGGGGCAGGGAGAAGGGCTTCAGGCGCTGTCAAACTGGCCTG  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGCCACCTCGGGGCA-GGAGAAGGGCTTCAGGCGCTGTCAAACTGGCCTG  193

seq1  GAGAGGTGCAAGGGGGCAGGCCGCGCTCGGCGACGCTGGCACTAGGCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGCAAGGGGGCAGGCCGCGCTCGGCGACGCTGGCACTAGGCTCC  243

seq1  GGCTTGGGCTGTGCGCCGCTGGCTCTGCGTCGCTAGCGCTCCAGGTACCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGCTGTGCGCCGCTGGCTCTGCGTCGCTAGCGCTCCAGGTACCG  293

seq1  GTGACTCACAAGCACTCGCGCCCGCCCCTTGCGCTCGCTCACTCGCTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCACAAGCACTCGCGCCCGCCCCTTGCGCTCGCTCACTCGCTCCC  343

seq1  CCGCCGCCGCCGCCGCCGCCGCCGTCGCCGCGCAGGCCAAACCCACCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCCGCCGCCGCCGCCGCCGTCGCCGCGCAGGCCAAACCCACCAGC  393

seq1  GCGCGCCTACCCAAAGGGCAGAAAACCAGCCTGTCTGGCACCAAGGGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCTACCCAAAGGGCAGAAAACCAGCCTGTCTGGCACCAAGGGACA  443

seq1  GAGGACGGCGCGGGGGGGAGGGAAGACTAGGGACCCGGAGAACTCCACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGGCGCGGGGGGGAGGGAAGACTAGGGACCCGGAGAACTCCACAC  493

seq1  GCAGCCACCCATGAGGCCTGGGGAGCCGACACCCACGGCCACAGCAGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACCCATGAGGCCTGGGGAGCCGACACCCACGGCCACAGCAGTCC  543

seq1  GGGGCTCCCAGGTGGGCGTCAGCGACAAAGGGAGCCAGGCGGAGGAGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCCAGGTGGGCGTCAGCGACAAAGGGAGCCAGGCGGAGGAGGTC  593

seq1  AGAACTGGGGTGACGGGAGCTCGGGAAAAGCTCAAACCCGCACACTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGGGTGACGGGAGCTCGGGAAAAGCTCAAACCCGCACACTTCCA  643

seq1  GGCCCCTTCCTCTCTCCCCTCCTCTCACTCCAGGGTGATGTCCCTGACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTCCTCTCTCCCCTCCTCTCACTCCAGGGTGATGTCCCTGACAC  693

seq1  CCAGAGGTCGGCCAAGGATGTGCCTAAGCTCCTCCTACGTCTCAAGGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTCGGCCAAGGATGTGCCTAAGCTCCTCCTACGTCTCAAGGGTC  743

seq1  CAGCTCTGCATGGTAGCGCACAGCACACTGGTCAAGATTGCGAAGAGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCATGGTAGCGCACAGCACACTGGTCAAGATTGCGAAGAGCCT  793

seq1  TTCTGTGCCTTGAACAAAAGACGCTTGACCTGGAACTGGGAGGTTCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCTTGAACAAAAGACGCTTGACCTGGAACTGGGAGGTTCACAG  843

seq1  AAACCGATAGACTCAAGTCCCCCATACACCCCTTTGGGCCACCTAGCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGATAGACTCAAGTCCCCCATACACCCCTTTGGGCCACCTAGCTTC  893

seq1  CACCACTACCCGGCAGAGAAAATGAGTAGCGTGCCTGCCTGAATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTACCCGGCAGAGAAAATGAGTAGCGTGCCTGCCTGAATTC  939