BAC Information

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BAC

Clone NameB6Ng01-170F14
Chromosome2 (Build37)
Map Location 103,531,867 - 103,646,575
singlet/doubletdoublet
Overlap geneAbtb2, Nat10, Caprin1
Upstream geneSlc1a2, Cd44, Pdhx, Apip, Ehf, Elf5, Cat
Downstream geneLOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F14.bB6Ng01-170F14.g
ACCDH961085DH961086
length1,1631,106
definitionDH961085|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F14, 5' end.DH961086|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,531,867 - 103,533,037)(103,645,477 - 103,646,575)
sequence
gaattcctctctacatgagatcatctctgtctaccctaagttcaacatag
gttgtttcccagacatttttagaagctccatatgtgacactttcgagtgt
gtcacctttcttccctagaccgcaggtgagtggggaagcagatagagtat
gatttcactcagctacatttgaatagaaataccatttccagggcctagct
caaaaactccaccatgttccccatcccagcaggtagatgtctgtgggata
aatatcaagttgtcttgggaacaactgagccctgggatcctgataaggct
accttcctggcagagtccaatgagctgtggcaagtgcccacaagagaaaa
gagtatttgcataggttggaagtcctggcctgtctggcttttagatggtg
agagaatgtatggtccgtagtcagctgtgtcagcgagtatggaaagagaa
agtgggtctctggcacatggcagcactgggccctgtggatgatgtgtgac
ctatcgtccaagaaagccacaccggtggcccaggagttgagaaaggtttg
ctgtcacactcctgccaccccatgtgtgtgggtagcagtgataccctggc
ctgctggatcagtccagcaacaatgccgagacatgctagcctgagaatgg
atctgatagcctcaactatgaaggcttaaggcccttcctgctacgtggaa
aagggtgtggtggcgacctgcatgtagtctccattggcacctagacctcc
tcacccacataagatacctccaggagtcgaggccggttgtgatctttcca
tcatgactcaaggctgcatgttagcacaaccacatcaccacatctgcctc
tccctttcctgccttatcctagtttccagctactttcctagagctacctt
agccccagtctgcctggttctaggaagtcctcatgagacattgccagctt
tttatctaggaattaactgttttatctaaaagaatatcaagttacctgaa
gccttcaggaacaaagactaggagtctctctttgcctcagagtgcagcct
cagagtaaatgaacccgtgagaacctgacccaagggctgagtaagaaaat
gcccttggtataaatctccgataagtgctcctaatgaactttctttgcct
gaagaaggcagga
gaattctgctggggtccagctgggaggtgaagtgttgggctagagagata
cccagagtctttctctgttctcagagagtgctgttctcaggctgcgaatg
tggctaagtggtggagaacttaatcaaatacttataaacccgtggatttt
gattctcagctctgtaacaaatcaattgcaaggaacacttcttgtctctg
aactgttccctggagatagaatggtggaccagcagccttccccaggtaac
ttctaggccagcctttcaggctttatccttctcacaaagcttcattctaa
ttcccccaccccctgtcatttccagcaaataactatcacctctactttac
aggaaaaagaaaatgatccatcctgcagcaatccttcccatttctaacca
ctgtcactacaaaagctacagatgacttccttcagtccctcacagtaagt
gtctctcctcttgtggctgagtccccagcatctaccattcatctatgccc
aattctttgcatcggggaaaccatttggggaaaccatccaaattgtacct
cctcaatctccagctctcatgctgttgttcagttcttaaaatccaagatt
tctagtttgtcttgactgttcagaattgttttgactcagttgattgtttg
aaatggtttcttcctttgatttctcggatatcatactattttctcttttc
tttgcatgttcccttccttgttctggctttcccattcacataacttttaa
atattggttgtatcctagcttcttttattttttaatatttcaatagatct
cattaattctcatcaccaacttcaattgctagctaattatgagtgaactc
cacaatgactgtttaaccaggaccttgcttctgaattccaggactgactc
aaatgtctgcttagcaagttcacatgaatatctcttaacttctacaaact
taacatgtataaattgaactccatgtttaaatcgaacctcctattgcacc
aatctggtccttcttgcagagagggctttagcattacttgtacaaaaatc
agaaaacaagttcactatgaaccccttttccttctttccttttctctcgt
tccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103531867_103533037
seq2: B6Ng01-170F14.b_48_1210

seq1  GAATTCCTCTCTACATGAGATCATCTCTGTCTACCCTAAGTTCAACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTACATGAGATCATCTCTGTCTACCCTAAGTTCAACATAG  50

seq1  GTTGTTTCCCAGACATTTTTAGAAGCTCCATATGTGACACTTTCGAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCCCAGACATTTTTAGAAGCTCCATATGTGACACTTTCGAGTGT  100

seq1  GTCACCTTTCTTCCCTAGACCGCAGGTGAGTGGGGAAGCAGATAGAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTTCTTCCCTAGACCGCAGGTGAGTGGGGAAGCAGATAGAGTAT  150

seq1  GATTTCACTCAGCTACATTTGAATAGAAATACCATTTCCAGGGCCTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTCAGCTACATTTGAATAGAAATACCATTTCCAGGGCCTAGCT  200

seq1  CAAAAACTCCACCATGTTCCCCATCCCAGCAGGTAGATGTCTGTGGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTCCACCATGTTCCCCATCCCAGCAGGTAGATGTCTGTGGGATA  250

seq1  AATATCAAGTTGTCTTGGGAACAACTGAGCCCTGGGATCCTGATAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAGTTGTCTTGGGAACAACTGAGCCCTGGGATCCTGATAAGGCT  300

seq1  ACCTTCCTGGCAGAGTCCAATGAGCTGTGGCAAGTGCCCACAAGAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTGGCAGAGTCCAATGAGCTGTGGCAAGTGCCCACAAGAGAAAA  350

seq1  GAGTATTTGCATAGGTTGGAAGTCCTGGCCTGTCTGGCTTTTAGATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTGCATAGGTTGGAAGTCCTGGCCTGTCTGGCTTTTAGATGGTG  400

seq1  AGAGAATGTATGGTCCGTAGTCAGCTGTGTCAGCGAGTATGGAAAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTATGGTCCGTAGTCAGCTGTGTCAGCGAGTATGGAAAGAGAA  450

seq1  AGTGGGTCTCTGGCACATGGCAGCACTGGGCCCTGTGGATGATGTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCTCTGGCACATGGCAGCACTGGGCCCTGTGGATGATGTGTGAC  500

seq1  CTATCGTCCAAGAAAGCCACACCGGTGGCCCAGGAGTTGAGAAAGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTCCAAGAAAGCCACACCGGTGGCCCAGGAGTTGAGAAAGGTTTG  550

seq1  CTGTCACACTCCTGCCACCCCATGTGTGTGGGTAGCAGTGATACCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACTCCTGCCACCCCATGTGTGTGGGTAGCAGTGATACCCTGGC  600

seq1  CTGCTGGATCAGTCCAGCAACAATGCCGAGACATGCTAGCCTGAGAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGATCAGTCCAGCAACAATGCCGAGACATGCTAGCCTGAGAATGG  650

seq1  ATCTGATAGCCTCAACTATGAAGGCTTAAGGCCCTTCCTGCTACGTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAGCCTCAACTATGAAGGCTTAAGGCCCTTCCTGCTACGTGGAA  700

seq1  AAGGGTGTGGTGGCGACCTGCATGTAGTCTCCATTGGCACCTAGACCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGGTGGCGACCTGCATGTAGTCTCCATTGGCACCTAGACCTCC  750

seq1  TCACCCACATAAGATACCTCCAGGAGTCGAGGCCGGTTGTGATCTTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACATAAGATACCTCCAGGAGTCGAGGCCGGTTGTGATCTTTCCA  800

seq1  TCATGACTCAAGGCTGCATGTTAGCACAACCACATCACCACATCTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTCAAGGCTGCATGTTAGCACAACCACATCACCACATCTGCCTC  850

seq1  TCCCTTTCCTGCCTTATCCTAGTTTTCCAGCTACTTTCCTAGAGCTACCT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCCTTTCCTGCCTTATCCTAG-TTTCCAGCTACTTTCCTAGAGCTACCT  899

seq1  TAGCCCCAGTCTGCCTGGTTCTAGGAAGTCCTCATGAGACATTGCCAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAGTCTGCCTGGTTCTAGGAAGTCCTCATGAGACATTGCCAGCT  949

seq1  TTTTATCTAGGAATTAACTGTTTTTATCTAAAAAGAATATTCAAGTTACC  1000
      |||||||||||||||||||| |||||||| ||||||||| ||||||||||
seq2  TTTTATCTAGGAATTAACTG-TTTTATCT-AAAAGAATA-TCAAGTTACC  996

seq1  TGAAGCCTTCAGGAACAAAAGACTAGGAAGTCTCTCTTTGCCTTCAGAGT  1050
      |||||||||||||||| |||||||||| |||||||||||||| |||||||
seq2  TGAAGCCTTCAGGAAC-AAAGACTAGG-AGTCTCTCTTTGCC-TCAGAGT  1043

seq1  GCAG-CTCAGGAGTAAATGGACCCCTGAGAACATGACCCAAGGGCTGAGT  1099
      |||| |||| ||||||||| |||| ||||||| |||||||||||||||||
seq2  GCAGCCTCA-GAGTAAATGAACCCGTGAGAACCTGACCCAAGGGCTGAGT  1092

seq1  AAGAAATATGCCCTTTGTTATAAA-CTCAGTAGATGGCTCCTAATGGACT  1148
      |||||| |||||| ||| |||||| ||| |   |  |||||||||| |||
seq2  AAGAAA-ATGCCC-TTGGTATAAATCTCCGATAAGTGCTCCTAATGAACT  1140

seq1  TTCTTTGCTGAAAGATGGCAGGA  1171
      ||||||||   |||| |||||||
seq2  TTCTTTGCCTGAAGAAGGCAGGA  1163

seq1: chr2_103645477_103646575
seq2: B6Ng01-170F14.g_67_1172 (reverse)

seq1  GAAGGAAGG------AAGGAAGGAAGGAAAAGGGG-TCATAGGTGACATG  43
      ||||||| |      |||||| ||||||||||||| ||||||   || ||
seq2  GAAGGAACGAGAGAAAAGGAAAGAAGGAAAAGGGGTTCATAGTGAACTTG  50

seq1  GTTTCTGATTTTTGTACCAGTAAATGCTAAAGCCCTCTCTGC-AGAAGGA  92
       |||||||||||||||| ||| |||||||||||||||||||| |||||||
seq2  TTTTCTGATTTTTGTACAAGT-AATGCTAAAGCCCTCTCTGCAAGAAGGA  99

seq1  CCAGA-TGGTGCAATAGGA-GTTCGATTTTATACATGGAGTTCAATTTTA  140
      ||||| ||||||||||||| |||||| |||| ||||||||||||| ||||
seq2  CCAGATTGGTGCAATAGGAGGTTCGA-TTTAAACATGGAGTTCAA-TTTA  147

seq1  TACATGTTAAGTTTGTAGAGGTTAAGAGATATTCATGTGAACTTGCTAAG  190
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACATGTTAAGTTTGTAGAAGTTAAGAGATATTCATGTGAACTTGCTAAG  197

seq1  CAGACATTTGAGTCAGTCCTGGAATTCAGAAGCAAGGTCCTGGTTAAACA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTTGAGTCAGTCCTGGAATTCAGAAGCAAGGTCCTGGTTAAACA  247

seq1  GTCATTGTGGAGTTCACTCATAATTAGCTAGCAATTGAAGTTGGTGATGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTGGAGTTCACTCATAATTAGCTAGCAATTGAAGTTGGTGATGA  297

seq1  GAATTAATGAGATCTATTGAAATATTAAAAAATAAAAGAAGCTAGGATAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATGAGATCTATTGAAATATTAAAAAATAAAAGAAGCTAGGATAC  347

seq1  AACCAATATTTAAAAGTTATGTGAATGGGAAAGCCAGAACAAGGAAGGGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATTTAAAAGTTATGTGAATGGGAAAGCCAGAACAAGGAAGGGA  397

seq1  ACATGCAAAGAAAAGAGAAAATAGTATGATATCCGAGAAATCAAAGGAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAGAAAAGAGAAAATAGTATGATATCCGAGAAATCAAAGGAAG  447

seq1  AAACCATTTCAAACAATCAACTGAGTCAAAACAATTCTGAACAGTCAAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTTCAAACAATCAACTGAGTCAAAACAATTCTGAACAGTCAAGA  497

seq1  CAAACTAGAAATCTTGGATTTTAAGAACTGAACAACAGCATGAGAGCTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAGAAATCTTGGATTTTAAGAACTGAACAACAGCATGAGAGCTGG  547

seq1  AGATTGAGGAGGTACAATTTGGATGGTTTCCCCAAATGGTTTCCCCGATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGAGGTACAATTTGGATGGTTTCCCCAAATGGTTTCCCCGATG  597

seq1  CAAAGAATTGGGCATAGATGAATGGTAGATGCTGGGGACTCAGCCACAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTGGGCATAGATGAATGGTAGATGCTGGGGACTCAGCCACAAG  647

seq1  AGGAGAGACACTTACTGTGAGGGACTGAAGGAAGTCATCTGTAGCTTTTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGACACTTACTGTGAGGGACTGAAGGAAGTCATCTGTAGCTTTTG  697

seq1  TAGTGACAGTGGTTAGAAATGGGAAGGATTGCTGCAGGATGGATCATTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAGTGGTTAGAAATGGGAAGGATTGCTGCAGGATGGATCATTTT  747

seq1  CTTTTTCCTGTAAAGTAGAGGTGATAGTTATTTGCTGGAAATGACAGGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTGTAAAGTAGAGGTGATAGTTATTTGCTGGAAATGACAGGGG  797

seq1  GTGGGGGAATTAGAATGAAGCTTTGTGAGAAGGATAAAGCCTGAAAGGCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAATTAGAATGAAGCTTTGTGAGAAGGATAAAGCCTGAAAGGCT  847

seq1  GGCCTAGAAGTTACCTGGGGAAGGCTGCTGGTCCACCATTCTATCTCCAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAAGTTACCTGGGGAAGGCTGCTGGTCCACCATTCTATCTCCAG  897

seq1  GGAACAGTTCAGAGACAAGAAGTGTTCCTTGCAATTGATTTGTTACAGAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTTCAGAGACAAGAAGTGTTCCTTGCAATTGATTTGTTACAGAG  947

seq1  CTGAGAATCAAAATCCACGGGTTTATAAGTATTTGATTAAGTTCTCCACC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCAAAATCCACGGGTTTATAAGTATTTGATTAAGTTCTCCACC  997

seq1  ACTTAGCCACATTCGCAGCCTGAGAACAGCACTCTCTGAGAACAGAGAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCACATTCGCAGCCTGAGAACAGCACTCTCTGAGAACAGAGAAA  1047

seq1  GACTCTGGGTATCTCTCTAGCCCAACACTTCACCTCCCAGCTGGACCCCA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGTATCTCTCTAGCCCAACACTTCACCTCCCAGCTGGACCCCA  1097

seq1  GCAGAATTC  1099
      |||||||||
seq2  GCAGAATTC  1106