BAC Information

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BAC

Clone NameB6Ng01-170H16
Chromosome2 (Build37)
Map Location 78,009,311 - 78,185,416
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170H16.bB6Ng01-170H16.g
ACCDH961181DH961182
length1,1951,108
definitionDH961181|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H16, 5' end.DH961182|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,184,205 - 78,185,416)(78,009,311 - 78,010,461)
sequence
gaattcaaaaaccctatggattcctaacatgtcagaccatctttcatctt
ttctaagcatcctggtcaaacaaatcccagagctgaagtaactctgggga
taaaatcaaattccatttttaagtccacatgttctaagacatacttccag
ttcatattaccactctagacagtactatatattttgaaagtaaaatttcc
tggcatttcattgattaatagcatccactggccagttatttcagaatata
aaaatgtagtatgctgtgttactttgtatttaaatatttacctaatatca
ttatcattatacaattatttaaatgctcatttcatgttttattcaatatt
ctggccaatcagcattataaatcagtggctatatttgggaggctccattt
aaagaaagatgatccattttttcactgccctggcacaacaatccacaaga
gtcttcttaaatagtccatgttttgtgactagctcgggaaagaaagataa
tttttatcctcatcaaaaaatatactgattgttttgcctagtcaatcatg
cattgtttaaaagttcatttataatgcccatggttgatatacaagaggaa
tgttagcacattatccagtcagtggaatctcttatttctgatccatacat
tcagttaattgtattactgagcacacatagtaccccgtgctgagattctg
ctatcacttatgcgtgagaattaagaacagtgctggagatcttgggtgca
aacccggtggatggtcccaggtccccagagaactctcttcaacacagatg
cccaagcacacctaggatcttgggatcactggcctatgaagagattgagg
tatccaaagagtttggaatgtctacaggatatttaaataaaactttagta
ttaaaaaaaatagaagaacagtactggattccaatgcacactggaacatt
ttgtactcatgatagttgtctcaacctagagctctgcctatgttctaaga
tacccttgagattttctcttaataacatactccagtaacaaagactacgg
aattaatactacaatactggaggagttagccaagggaattgatgcttcac
agtgatgaggggaggggtattctacgcgagaaaaattccatgcatgcaaa
ttgctatctggttccatgtcgtttggactggactagccttgtttc
gaattcagtaactgcatttcataaatgcattatcttttccttattcaaaa
tcaattaaataaaaaagaaatattacctaaaacttttgtcttgcttcttg
tttggttagataaagaaggcatttgttggatatttctagttggttagttt
ctttagctccaactggtgttaaagaggtaagaagggtccaatgaacttac
tgctatgccattgtttgagatttgaggacattagctgggtagtcttcctt
tgaactttcagagtcttgttaaggctttcaatatatatatatatttcccc
acggtgttcagtcatacttagtgagggggaagatggaaaattgtgtgtat
ttcatgttcttggcaggaactggtgctctactttcgacagcaaaagcatg
ttgcattacctaatcttcatgtgtgcttagagaaatccatgacagatgga
ccacatgcattgttacagtttcgtccaacctgacaatactgttttagaac
aatgtccagttttggctgaggaagccatggtttggccttccactcatgtt
tattcatgtgagttatgggtcaggttctatgtttggggctatagtattac
agaactgcgaaccacacttgtccttctaccttttcccaagttatttggaa
tcagcctttcattcaaagtgagcctataaagggaaatggctgcatgtaca
tctcctcatagccaatttagtcttctcagatgtaccatctcttttattca
tagagttcagctctttgttcttactctgagttagaaatccaagccttctg
agatctgcaaagaacaataatatcaggcctggatgtcacattgtctggag
caaaaagcaagagatacttgtccaagatccagtttactaagaccaaagag
tccaggctcttcttgagaatgccttctgttatgtgcagcagaaatgctag
gatgcttgcacgtgtgaagaaccatgtttaactgctgtgaagatgtgtag
cgtgctctgagacgggtgtcatagatcatttcctatcactgctttcattc
ttgccttccttaatacttcagttctccaacatccctctttttcttcattt
caggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78184205_78185416
seq2: B6Ng01-170H16.b_48_1242 (reverse)

seq1  GAAACAATAGCTAGTCCAGTCCAAACAGCAATGGTGAACAGATTAGCAAT  50
      |||||||  ||||||||||||||||| |  ||||  | |||| |||||||
seq2  GAAACAA-GGCTAGTCCAGTCCAAAC-GACATGG-AACCAGA-TAGCAAT  46

seq1  TTGCATGCATGGGATGTTTCTCTCGCTAGTATTACTCTCTTCTCTCATCA  100
      |||||||||||| || |||||| || ||| ||  | |||  | |||||||
seq2  TTGCATGCATGGAATTTTTCTCGCG-TAGAATACCCCTC--CCCTCATCA  93

seq1  CTGTGTAGCCATCCAATTTCCTGTGCTACTTCCTCCAGTATTGTAGTATT  150
      ||||| || ||| ||||| |||  ||||  ||||||||||||||||||||
seq2  CTGTGAAG-CAT-CAATTCCCTTGGCTAACTCCTCCAGTATTGTAGTATT  141

seq1  AATTCTGTAGTCTTGTGTTACTGGAGTATGTTATTAAGGAGAAAATCTCA  200
      ||||| |||||||| |||||||||||||||||||||| ||||||||||||
seq2  AATTCCGTAGTCTT-TGTTACTGGAGTATGTTATTAA-GAGAAAATCTCA  189

seq1  AGGGGTATCTTAGAACATAGGCAGAGCTCTTAGGTTTGGAGACAACTATC  250
      | ||||||||||||||||||||||||||| ||||||  ||||||||||||
seq2  A-GGGTATCTTAGAACATAGGCAGAGCTC-TAGGTT--GAGACAACTATC  235

seq1  ATGAGTACAAAATGTTCCAGTTGTGCATTGGAATCCAGTACTGTTCTTCT  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGAGTACAAAATGTTCCAG-TGTGCATTGGAATCCAGTACTGTTCTTCT  284

seq1  ATTTTTTTTTAATACTAAAGTTTTATTTAAATATCCTGTAGACATTCCAA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTTTTTAATACTAAAGTTTTATTTAAATATCCTGTAGACATTCCAA  333

seq1  ACTCTTTGGATACCTCAATCTCTTCATAGGCCAGTGATCCCAAGATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGATACCTCAATCTCTTCATAGGCCAGTGATCCCAAGATCCTA  383

seq1  GGTGTGCTTGGGCATCTGTGTTGAAGAGAGTTCTCTGGGGACCTGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTTGGGCATCTGTGTTGAAGAGAGTTCTCTGGGGACCTGGGACC  433

seq1  ATCCACCGGGTTTGCACCCAAGATCTCCAGCACTGTTCTTAATTCTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCGGGTTTGCACCCAAGATCTCCAGCACTGTTCTTAATTCTCACG  483

seq1  CATAAGTGATAGCAGAATCTCAGCACGGGGTACTATGTGTGCTCAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTGATAGCAGAATCTCAGCACGGGGTACTATGTGTGCTCAGTAAT  533

seq1  ACAATTAACTGAATGTATGGATCAGAAATAAGAGATTCCACTGACTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAACTGAATGTATGGATCAGAAATAAGAGATTCCACTGACTGGAT  583

seq1  AATGTGCTAACATTCCTCTTGTATATCAACCATGGGCATTATAAATGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTAACATTCCTCTTGTATATCAACCATGGGCATTATAAATGAAC  633

seq1  TTTTAAACAATGCATGATTGACTAGGCAAAACAATCAGTATATTTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAATGCATGATTGACTAGGCAAAACAATCAGTATATTTTTTGA  683

seq1  TGAGGATAAAAATTATCTTTCTTTCCCGAGCTAGTCACAAAACATGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATAAAAATTATCTTTCTTTCCCGAGCTAGTCACAAAACATGGACT  733

seq1  ATTTAAGAAGACTCTTGTGGATTGTTGTGCCAGGGCAGTGAAAAAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAGACTCTTGTGGATTGTTGTGCCAGGGCAGTGAAAAAATGGA  783

seq1  TCATCTTTCTTTAAATGGAGCCTCCCAAATATAGCCACTGATTTATAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCTTTAAATGGAGCCTCCCAAATATAGCCACTGATTTATAATG  833

seq1  CTGATTGGCCAGAATATTGAATAAAACATGAAATGAGCATTTAAATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCCAGAATATTGAATAAAACATGAAATGAGCATTTAAATAATT  883

seq1  GTATAATGATAATGATATTAGGTAAATATTTAAATACAAAGTAACACAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATGATAATGATATTAGGTAAATATTTAAATACAAAGTAACACAGC  933

seq1  ATACTACATTTTTATATTCTGAAATAACTGGCCAGTGGATGCTATTAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACATTTTTATATTCTGAAATAACTGGCCAGTGGATGCTATTAATC  983

seq1  AATGAAATGCCAGGAAATTTTACTTTCAAAATATATAGTACTGTCTAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGCCAGGAAATTTTACTTTCAAAATATATAGTACTGTCTAGAG  1033

seq1  TGGTAATATGAACTGGAAGTATGTCTTAGAACATGTGGACTTAAAAATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATATGAACTGGAAGTATGTCTTAGAACATGTGGACTTAAAAATGG  1083

seq1  AATTTGATTTTATCCCCAGAGTTACTTCAGCTCTGGGATTTGTTTGACCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTTTATCCCCAGAGTTACTTCAGCTCTGGGATTTGTTTGACCA  1133

seq1  GGATGCTTAGAAAAGATGAAAGATGGTCTGACATGTTAGGAATCCATAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTAGAAAAGATGAAAGATGGTCTGACATGTTAGGAATCCATAGG  1183

seq1  GTTTTTGAATTC  1212
      ||||||||||||
seq2  GTTTTTGAATTC  1195

seq1: chr2_78009311_78010461
seq2: B6Ng01-170H16.g_69_1176

seq1  GAATTCAGTAACTGCATTTCATAAATGCATTATCTTTTCCTTATTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAACTGCATTTCATAAATGCATTATCTTTTCCTTATTCAAAA  50

seq1  TCAATTAAATAAAAAAGAAATATTACCTAAAACTTTTGTCTTGCTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAATAAAAAAGAAATATTACCTAAAACTTTTGTCTTGCTTCTTG  100

seq1  TTTGGTTAGATAAAGAAGGCATTTGTTGGATATTTCTAGTTGGTTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAGATAAAGAAGGCATTTGTTGGATATTTCTAGTTGGTTAGTTT  150

seq1  CTTTAGCTCCAACTGGTGTTAAAGAGGTAAGAAGGGTCCAATGAACTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCAACTGGTGTTAAAGAGGTAAGAAGGGTCCAATGAACTTAC  200

seq1  TGCTATGCCATTGTTTGAGATTTGAGGACATTAGCTGGGTAGTCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCCATTGTTTGAGATTTGAGGACATTAGCTGGGTAGTCTTCCTT  250

seq1  TGAACTTTCAGAGTCTTGTTAAGGCTTTCAATATATATATATATTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCAGAGTCTTGTTAAGGCTTTCAATATATATATATATTTCCCC  300

seq1  ACGGTGTTCAGTCATACTTAGTGAGGGGGAAGATGGAAAATTGTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGTTCAGTCATACTTAGTGAGGGGGAAGATGGAAAATTGTGTGTAT  350

seq1  TTCATGTTCTTGGCAGGAACTGGTGCTCTACTTTCGACAGCAAAAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCTTGGCAGGAACTGGTGCTCTACTTTCGACAGCAAAAGCATG  400

seq1  TTGCATTACCTAATCTTCATGTGTGCTTAGAGAAATCCATGACAGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTACCTAATCTTCATGTGTGCTTAGAGAAATCCATGACAGATGGA  450

seq1  CCACATGCATTGTTACAGTTTCGTCCAACCTGACAATACTGTTTTAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCATTGTTACAGTTTCGTCCAACCTGACAATACTGTTTTAGAAC  500

seq1  AATGTCCAGTTTTGGCTGAGGAAGCCATGGTTTGGCCTTCCACTCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGTTTTGGCTGAGGAAGCCATGGTTTGGCCTTCCACTCATGTT  550

seq1  TATTCATGTGAGTTATGGGTCAGGTTCTATGTTTGGGGCTATAGTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTGAGTTATGGGTCAGGTTCTATGTTTGGGGCTATAGTATTAC  600

seq1  AGAACTGCGAACCACACTTGTCCTTCTACCTTTTCCCAAGTTATTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCGAACCACACTTGTCCTTCTACCTTTTCCCAAGTTATTTGGAA  650

seq1  TCAGCCTTTCATTCAAAGTGAGCCTATAAAGGGAAATGGCTGCATGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTCATTCAAAGTGAGCCTATAAAGGGAAATGGCTGCATGTACA  700

seq1  TCTCCTCATAGCCAATTTAGTCTTCTCAGATGTACCATCTCTTTTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATAGCCAATTTAGTCTTCTCAGATGTACCATCTCTTTTATTCA  750

seq1  TAGAGTTCAGCTCTTTGTTCTTACTCTGAGTTAGAAATCCAAGCCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCAGCTCTTTGTTCTTACTCTGAGTTAGAAATCCAAGCCTTCTG  800

seq1  AGATCTGCAAAGAACAATAATATCAGGCCTGGATGTCACATTGTCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCAAAGAACAATAATATCAGGCCTGGATGTCACATTGTCTGGAG  850

seq1  CAAAAAGCAAGAGATACTTG-CCAAGATCCAGTTTACTAAGACCAAAGAG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAAAAGCAAGAGATACTTGTCCAAGATCCAGTTTACTAAGACCAAAGAG  900

seq1  TCCAGGCTCTTCTTGAGAATGCCTTCTGTTATGTGCAGCAGAAATGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCTTCTTGAGAATGCCTTCTGTTATGTGCAGCAGAAATGCTAG  950

seq1  GATGCTTGCACGTGTGAGGAACACTGTTTTACTGCTGTGAGGATGTGTAG  999
      ||||||||||||||||| ||||  ||||| |||||||||| |||||||||
seq2  GATGCTTGCACGTGTGAAGAACCATGTTTAACTGCTGTGAAGATGTGTAG  1000

seq1  CGTGCTCTGTAGACGGTGTGTCATAGATCCATTTCCTATCTACTGCTTTC  1049
      ||||||||| |||||| ||||||||||| ||||||||||| |||||||||
seq2  CGTGCTCTG-AGACGG-GTGTCATAGAT-CATTTCCTATC-ACTGCTTTC  1046

seq1  TATTCCTTGCCATTCTTTAATACTTCCAGTTCTCCACACAATCCTCTTTT  1099
       ||| |||||| ||| ||||||||| |||||||||| |||  ||||||||
seq2  -ATT-CTTGCC-TTCCTTAATACTT-CAGTTCTCCA-ACATCCCTCTTTT  1091

seq1  CCACGATTCCAGGCATGCACAAGGACTACGTCCATGCCTACCTTCAGGTA  1149
       |   ||| |||| |||                                 
seq2  TCTTCATTTCAGGTATG---------------------------------  1108

seq1  TG  1151
        
seq2  --  1108