BAC Information

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BAC

Clone NameB6Ng01-170H24
Chromosome2 (Build37)
Map Location 167,128,966 - 167,269,455
singlet/doubletdoublet
Overlap geneB4galt5, Slc9a8
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951
Downstream geneSpata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170H24.bB6Ng01-170H24.g
ACCDH961197DH961198
length1,0681,109
definitionDH961197|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H24, 5' end.DH961198|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,128,966 - 167,130,041)(167,268,323 - 167,269,455)
sequence
gaattccaggttcactgaaagatccccaacacagcagggccacacctgag
caggtcaccaagcagtccaccctcagcttggggagggaggtcccaccaat
gtggccacgtagcacagagagccacagggaacatggggaaaagttgtcaa
cgaagcccaagagccttaacacactgcattctgaccaacttcacctctag
gatctttcccaaggcccagtgcaagtgaaacagcctgcttagtcacagcc
cgcacacatgagaacactgaccatgccagtaagaaggcatgtaaatgaca
gatggtattccacacaggaccccagcagggatactcaccctgggactgat
atgccgccactacaggtctgagaaactgacaaacacatctggcgtgactc
attcgccatgttttaaagacacactgaaatggtaatgatgctgttttggg
gtgtgcagactggggaaactgatttctattcttatgaattttccagtaag
cagacttctcttccctgctctatggtgcaagagtctgactaggcagcctg
ggctggctttgacctcgcagaactctcctccacagcctcctaggagctga
aattatagtctaagaaaactttatgtatatgagtgttttgtctgcatacg
tgtacacgcaccctatgcaagcctggtgcccttggaggtcagaagtaggc
aaaggatcccttggaactgaagttataatggactgttgtgagccgccatg
tgagtgctgggaattgaacccaagttctgggcaagagtagcaagctctct
aagccaattctctggcctcgaattaatgtttaacattttaattctgtctg
tgtgagtgtgtatgtgtgtagcacacgcatgtgagtgctggtgcctacag
gggacactgaatcctccagctagagttagttacactgggctgggaagcaa
cttaggtgttctggggagccgtatgtgttctactgctgagtcccttttcc
aggccatgttcattagtatacaaaggtgttaagctgttatttcagtttat
tttttcattgtcaaaggg
gaattctcttccttgtttctaggtcaggtggagctaagggggagacaaca
gttgagaagacatactggggctgggtgtgatgagttgtcttttgtttttg
ttttttataggcttttaataccagcactcaggaagcagacacacagtgag
gtccaggccatccagggccacacagtgagatttttgtctcaaaaaaaaaa
aaaaaaaaagaaatagaaaaaaaaaaatacaaatgccatctgctctgtag
ttggccaaactgctcacaaccttcagaaagcaggcctggaagctcagcac
ctgcgcaggctcagcatcagggccaggcctgccccaggaagcaggggcta
ctgcagttaaagggtagcaacctcttggggagtagccacaccccaactag
acactgctccaggggagccttaccttgtgcagtgagtatcctgactcaaa
gataataggtgggagcaagagaaggaaaaacatgttggggcgaaacattt
cttcctcctgtaaagtcaaaagggaagatactcaggacgggagtgcggaa
cccaggaccttgatttccagaaccacaaagtgaagaaaagcgactcctat
aagtcatgcggatgccggcgctgacggagggtgggacgctggaactcctg
gagaaaaaggaggagctgcggcagccctgccttcaggccgccaggaaggc
tggctgtgactgcacttggaaataggatctctcaatgtcaggttacaatc
agaggccaggggaggacagagcagatgacaagggcatacacccacagata
atgaatttttgctttgttttatgtttttcttggtgctggggattgaaccc
aggaccttgtgctactgagctagagaacatctggtgagtcagaaaggata
cagagatcagagatggacccacgagaaggtcccatgggcctttgtgccat
gtccaatattggctcgagtaactgtggttgggacttgaacaatatggatt
cacactgctacctcacacatccagaaacctgagttcgggttttgtttttt
cttcccttcgaaattaccttctgtcgattgagggggccacgtggattagc
acttggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167128966_167130041
seq2: B6Ng01-170H24.b_44_1111

seq1  GAATTCCAGGTTCACTGAAAGATCCCCAACACAGCAGGGCCACACCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCACTGAAAGATCCCCAACACAGCAGGGCCACACCTGAG  50

seq1  CAGGTCACCAAGCAGTCCACCCTCAGCTTGGGGAGGGAGGTCCCACCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCACCAAGCAGTCCACCCTCAGCTTGGGGAGGGAGGTCCCACCAAT  100

seq1  GTGGCCACGTAGCACAGAGAGCCACAGGGAACATGGGGAAAAGTTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACGTAGCACAGAGAGCCACAGGGAACATGGGGAAAAGTTGTCAA  150

seq1  CGAAGCCCAAGAGCCTTAACACACTGCATTCTGACCAACTTCACCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCCAAGAGCCTTAACACACTGCATTCTGACCAACTTCACCTCTAG  200

seq1  GATCTTTCCCAAGGCCCAGTGCAAGTGAAACAGCCTGCTTAGTCACAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCCCAAGGCCCAGTGCAAGTGAAACAGCCTGCTTAGTCACAGCC  250

seq1  CGCACACATGAGAACACTGACCATGCCAGTAAGAAGGCATGTAAATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACATGAGAACACTGACCATGCCAGTAAGAAGGCATGTAAATGACA  300

seq1  GATGGTATTCCACACAGGACCCCAGCAGGGATACTCACCCTGGGACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATTCCACACAGGACCCCAGCAGGGATACTCACCCTGGGACTGAT  350

seq1  ATGCCGCCACTACAGGTCTGAGAAACTGACAAACACATCTGGCGTGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGCCACTACAGGTCTGAGAAACTGACAAACACATCTGGCGTGACTC  400

seq1  ATTCGCCATGTTTTAAAGACACACTGAAATGGTAATGATGCTGTTTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCCATGTTTTAAAGACACACTGAAATGGTAATGATGCTGTTTTGGG  450

seq1  GTGTGCAGACTGGGGAAACTGATTTCTATTCTTATGAATTTTCCAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGACTGGGGAAACTGATTTCTATTCTTATGAATTTTCCAGTAAG  500

seq1  CAGACTTCTCTTCCCTGCTCTATGGTGCAAGAGTCTGACTAGGCAGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTCTTCCCTGCTCTATGGTGCAAGAGTCTGACTAGGCAGCCTG  550

seq1  GGCTGGCTTTGACCTCGCAGAACTCTCCTCCACAGCCTCCTAGGAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTTGACCTCGCAGAACTCTCCTCCACAGCCTCCTAGGAGCTGA  600

seq1  AATTATAGTCTAAGAAAACTTTATGTATATGAGTGTTTTGTCTGCATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGTCTAAGAAAACTTTATGTATATGAGTGTTTTGTCTGCATACG  650

seq1  TGTACACGCACCCTATGCAAGCCTGGTGCCCTTGGAGGTCAGAAGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACGCACCCTATGCAAGCCTGGTGCCCTTGGAGGTCAGAAGTAGGC  700

seq1  AAAGGATCCCTTGGAACTGAAGTTATAATGGACTGTTGTGAGCCGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCCCTTGGAACTGAAGTTATAATGGACTGTTGTGAGCCGCCATG  750

seq1  TGAGTGCTGGGAATTGAACCCAAGTTCTGGGCAAGAGTAGCAAGCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGGAATTGAACCCAAGTTCTGGGCAAGAGTAGCAAGCTCTCT  800

seq1  AAGCCAATTCTCTGGCCTCGAATTAATGTTTAACATTTTAATTCTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATTCTCTGGCCTCGAATTAATGTTTAACATTTTAATTCTGTCTG  850

seq1  TGTGAGTGTGTATGTGTGTAGCACACGCATGTGAGTGCTGGTGCCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTATGTGTGTAGCACACGCATGTGAGTGCTGGTGCCTACAG  900

seq1  GGGACACTGAATCCTCCAAGCTAGAGTTAGTTACACTTGGCTGGGAAGCA  950
      ||||||||||||||||| ||||||||||||||||||| ||||||||||| 
seq2  GGGACACTGAATCCTCC-AGCTAGAGTTAGTTACACTGGGCTGGGAAGC-  948

seq1  AACTTAGGTGTTCTGGGGAAGCCGTATGTGTTCTTAACTGCTGAGTCACT  1000
      |||||||||||||||||| |||||||||||||||  ||||||||||| ||
seq2  AACTTAGGTGTTCTGGGG-AGCCGTATGTGTTCT--ACTGCTGAGTCCCT  995

seq1  TTTCCAGGCCCCATGTTCATTAGTATACAAAAGGTGTTAAGCTGTTATTT  1050
      ||||||||  |||||||||||||||||| |||||||||||||||||| ||
seq2  TTTCCAGG--CCATGTTCATTAGTATAC-AAAGGTGTTAAGCTGTTA-TT  1041

seq1  TAAGTTTATTTTTTCA-TGTCAAAGGG  1076
      | |||||||||||||| ||||||||||
seq2  TCAGTTTATTTTTTCATTGTCAAAGGG  1068

seq1: chr2_167268323_167269455
seq2: B6Ng01-170H24.g_67_1175 (reverse)

seq1  CTACCAAGTGCTTAGATCAAAGGTGTGCACCATCATATCTGACAAGAAAG  50
      ||||||||||||   |||  | ||| || || ||| ||| ||| |||| |
seq2  CTACCAAGTGCT--AATC-CACGTG-GCCCCCTCA-ATC-GAC-AGAAGG  43

seq1  TAAAATTTTGAAGGGGAAAGAAAAAAACCAAAAACCCCAAACACTCAAGT  100
      |  ||||| ||||||  |||||||||    ||||||| |   ||||| ||
seq2  T--AATTTCGAAGGG--AAGAAAAAA---CAAAACCCGA---ACTCAGGT  83

seq1  TTCTTGATGTGTGAGGTAGCAGTGTTGAATCCATATTGTTCAAGTCCCAA  150
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCTGGATGTGTGAGGTAGCAGTG-TGAATCCATATTGTTCAAGTCCCAA  132

seq1  CCACAGTTACCTCGGGCCAATATTGGGACATGGCACAAAGGCCCATGGGA  200
      ||||||||| |||| ||||||||| |||||||||||||||||||||||||
seq2  CCACAGTTA-CTCGAGCCAATATT-GGACATGGCACAAAGGCCCATGGGA  180

seq1  CCTTCTCGTGGGTCCATCTCTGGATCTCTGTATCCTTTTCTGACTCACCA  250
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  CCTTCTCGTGGGTCCATCTCT-GATCTCTGTATCC-TTTCTGACTCACCA  228

seq1  GATGTTCTCTTAGCTCAGTAAGCACAAGGTCCTGGGTTCAATCCCCAGCA  300
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  GATGTTCTC-TAGCTCAGT-AGCACAAGGTCCTGGGTTCAATCCCCAGCA  276

seq1  CCAAGAAAAACATAAAACAAAGCAAAAATTCATTATCTGTGGGTGTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAAACATAAAACAAAGCAAAAATTCATTATCTGTGGGTGTATGC  326

seq1  CCTTGTCATCTGCTCTGTCCTCCCCTGGCCTCTGATTGTAACCTGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATCTGCTCTGTCCTCCCCTGGCCTCTGATTGTAACCTGACATT  376

seq1  GAGAGATCCTATTTCCAAGTGCAGTCACAGCCAGCCTTCCTGGCGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCCTATTTCCAAGTGCAGTCACAGCCAGCCTTCCTGGCGGCCTG  426

seq1  AAGGCAGGGCTGCCGCAGCTCCTCCTTTTTCTCCAGGAGTTCCAGCGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGCTGCCGCAGCTCCTCCTTTTTCTCCAGGAGTTCCAGCGTCC  476

seq1  CACCCTCCGTCAGCGCCGGCATCCGCATGACTTATAGGAGTCGCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCGTCAGCGCCGGCATCCGCATGACTTATAGGAGTCGCTTTTCT  526

seq1  TCACTTTGTGGTTCTGGAAATCAAGGTCCTGGGTTCCGCACTCCCGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTGGTTCTGGAAATCAAGGTCCTGGGTTCCGCACTCCCGTCCT  576

seq1  GAGTATCTTCCCTTTTGACTTTACAGGAGGAAGAAATGTTTCGCCCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTTCCCTTTTGACTTTACAGGAGGAAGAAATGTTTCGCCCCAAC  626

seq1  ATGTTTTTCCTTCTCTTGCTCCCACCTATTATCTTTGAGTCAGGATACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCCTTCTCTTGCTCCCACCTATTATCTTTGAGTCAGGATACTC  676

seq1  ACTGCACAAGGTAAGGCTCCCCTGGAGCAGTGTCTAGTTGGGGTGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAAGGTAAGGCTCCCCTGGAGCAGTGTCTAGTTGGGGTGTGGCT  726

seq1  ACTCCCCAAGAGGTTGCTACCCTTTAACTGCAGTAGCCCCTGCTTCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAAGAGGTTGCTACCCTTTAACTGCAGTAGCCCCTGCTTCCTGG  776

seq1  GGCAGGCCTGGCCCTGATGCTGAGCCTGCGCAGGTGCTGAGCTTCCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCTGGCCCTGATGCTGAGCCTGCGCAGGTGCTGAGCTTCCAGGC  826

seq1  CTGCTTTCTGAAGGTTGTGAGCAGTTTGGCCAACTACAGAGCAGATGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTGAAGGTTGTGAGCAGTTTGGCCAACTACAGAGCAGATGGCA  876

seq1  TTTGTATTTTTTTTTTTCTATTTCTTTTTTTTTTTTTTTTTTTGAGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTTTTTTTTCTATTTCTTTTTTTTTTTTTTTTTTTGAGACAA  926

seq1  AAATCTCACTGTGTGGCCCTGGATGGCCTGGACCTCACTGTGTGTCTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACTGTGTGGCCCTGGATGGCCTGGACCTCACTGTGTGTCTGCT  976

seq1  TCCTGAGTGCTGGTATTAAAAGCCTATAAAAAACAAAAACAAAAGACAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGTATTAAAAGCCTATAAAAAACAAAAACAAAAGACAAC  1026

seq1  TCATCACACCCAGCCCCAGTATGTCTTCTCAACTGTTGTCTCCCCCTTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACACCCAGCCCCAGTATGTCTTCTCAACTGTTGTCTCCCCCTTAG  1076

seq1  CTCCACCTGACCTAGAAACAAGGAAGAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  CTCCACCTGACCTAGAAACAAGGAAGAGAATTC  1109