BAC Information

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BAC

Clone NameB6Ng01-170I23
Chromosome2 (Build37)
Map Location 15,345,189 - 15,346,152
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329
Downstream geneLOC227588, LOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170I23.bB6Ng01-170I23.g
ACCDH961241DH961242
length1,244961
definitionDH961241|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I23, 5' end.DH961242|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacgtccatacctaaacataataaaagcaatatatagcaaatta
gtagccaacataaaactaaatggagagaaatttgaagcaatgggactaaa
atcagggtctagacaaggctgtccactttttccctacctattcaatatag
tacttagagtcccagtcagagcaattagacaacaaaaagagatcaagggg
atacaaattggaaaggaagaaatcaaaatgttactatatgcagatgatat
gataatatctataagtgaccctaataatcccaccagagaactcctgaacc
tgataaacagcctcagtgcagtacctggatataaaattaactgacacaaa
acagtggcctttctccacacaaaggataaacaggctgagaaagagggaaa
caacgcccttcacaatagtcacaaataatacaaaataccttgttgtgact
ttaaggaactgaaagatctgtatgataagaacttcaagtctctgaagaaa
gaaatcgattaagagctcagaagatgggaagatctcccttgctcatgggt
tggcaggattaatatagtcaaaatggctatcttgtcaaaagcaatctaca
gattcaatgcaatccccatcaaaattctaactcaactcttcacagagtta
gaaagggcaatttgtaaattcatctggaataataaaaacctaggatagca
aaaactattctcaacaataaaagaacctctgttagaatcaccatgtttga
cctcaagctatactacagatcaattgtgataaaaactacatggtactggt
acccagacagacaggtagatcaatggaatagaattgaagacccagaaatg
aacccacacacctatggtcacttgatctttgactaacggatgcaaaacca
tccagtggaaagaagaccgcatctttaacaaatggtgctggttcaactgt
tgcttttcatatagaagaatgcaaattgatccattcttatcctccttgta
caaagctcaagtcctaagtgatctaggagcttccacataataccagaaga
caagtgaaacttataaaggagaaagtgggaatgcctagaagaaatggcac
aggaaaaattcctggacagaaaattaatgacttgggctcgtagattgaaa
ttgacaatggacctctatgaagccttgaatccaaaacccttccataagag
aggctccaccgaccttggaggattaccaccctataccagacatg
gaattcatcaaaatatcacttttagatggttgaatgttgcacttagtttt
ttaaagagaaaacctagaacactgtttttattttggttctagttagtgtt
ccataaataaatgttgaaatgaggcaggagttggagagggaactgaacta
tagagcagaattacagttaacttcctcaaaaccatatgcaaacaaaaagg
gctatctgaaacatttaaaccaaacaaacaaagaaacaagaaagctcacc
aatattgaactgtgaaactatctttataatcttaactagaacttaggaca
ttctagacaagcaaaacttaaggtagcctgttgcccataaactggtgttg
cctgaattactagacacacatttatttttctttaaaaaatctgaatgtaa
gtttatttggtctaacagtacaggaaatattagaatttattcttttgaac
cttaacaaactgaattccttttcagtttatccaacataatatgttttaaa
cggtgctataatacaatgtgtatctaaactagtagttacatctttgttta
gtttccatatactacccatgattcctaaattaattaccagtggcagagat
ttcactaattaagcacactgggttttttcatatacgttttggatagtaaa
taatttgaagtgtttttttacattcatcacattcgatttttatgttaatc
tgtcactttgaatctgccttatctttaccatgttagtgtcctctgtttct
cttcccttttctcttttttcttagatgttctttaagacaaaaaaaagaga
tacagttcattaactcatatatacataaaaaggaaaaagcaaagaaggaa
tatgttctggtaaaatataaatttatttttcatattttattgagttagaa
caaaattattcaaaatagcacaccctgaaatattcattttgaatttttat
aaatcaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_15345189_15346152
seq2: B6Ng01-170I23.g_67_1027 (reverse)

seq1  CCCTTTGAATTTATAAAAATTC-AAATGAATATTTCAGTGTGTTGCTATT  49
      ||||||| |||||||||||||| ||||||||||||||| ||| |||||||
seq2  CCCTTTG-ATTTATAAAAATTCAAAATGAATATTTCAGGGTG-TGCTATT  48

seq1  TTGAATAATTTTGTTCTAACTCAATAAAAATATGAAAAATAAAATTTATA  99
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TTGAATAATTTTGTTCTAACTCAAT-AAAATATGAAAAAT-AAATTTATA  96

seq1  TTTTACCAGAACATATTCCTTCTTTGCTTTTTCCTTTTTATGTATATATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAGAACATATTCCTTCTTTGCTTTTTCCTTTTTATGTATATATG  146

seq1  AGTTAATGAACTGTATCTCTTTTTTTTGTCTTAAAGAACATCTAAGAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGAACTGTATCTCTTTTTTTTGTCTTAAAGAACATCTAAGAAAA  196

seq1  AAGAGAAAAGGGAAGAGAAACAGAGGACACTAACATGGTAAAGATAAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGGGAAGAGAAACAGAGGACACTAACATGGTAAAGATAAGGC  246

seq1  AGATTCAAAGTGACAGATTAACATAAAAATCGAATGTGATGAATGTAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAGTGACAGATTAACATAAAAATCGAATGTGATGAATGTAAAA  296

seq1  AAACACTTCAAATTATTTACTATCCAAAACGTATATGAAAAAACCCAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCAAATTATTTACTATCCAAAACGTATATGAAAAAACCCAGTG  346

seq1  TGCTTAATTAGTGAAATCTCTGCCACTGGTAATTAATTTAGGAATCATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTAGTGAAATCTCTGCCACTGGTAATTAATTTAGGAATCATGG  396

seq1  GTAGTATATGGAAACTAAACAAAGATGTAACTACTAGTTTAGATACACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATATGGAAACTAAACAAAGATGTAACTACTAGTTTAGATACACAT  446

seq1  TGTATTATAGCACCGTTTAAAACATATTATGTTGGATAAACTGAAAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATAGCACCGTTTAAAACATATTATGTTGGATAAACTGAAAAGGA  496

seq1  ATTCAGTTTGTTAAGGTTCAAAAGAATAAATTCTAATATTTCCTGTACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTGTTAAGGTTCAAAAGAATAAATTCTAATATTTCCTGTACTG  546

seq1  TTAGACCAAATAAACTTACATTCAGATTTTTTAAAGAAAAATAAATGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCAAATAAACTTACATTCAGATTTTTTAAAGAAAAATAAATGTGT  596

seq1  GTCTAGTAATTCAGGCAACACCAGTTTATGGGCAACAGGCTACCTTAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTAATTCAGGCAACACCAGTTTATGGGCAACAGGCTACCTTAAGT  646

seq1  TTTGCTTGTCTAGAATGTCCTAAGTTCTAGTTAAGATTATAAAGATAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTCTAGAATGTCCTAAGTTCTAGTTAAGATTATAAAGATAGTT  696

seq1  TCACAGTTCAATATTGGTGAGCTTTCTTGTTTCTTTGTTTGTTTGGTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTCAATATTGGTGAGCTTTCTTGTTTCTTTGTTTGTTTGGTTTA  746

seq1  AATGTTTCAGATAGCCCTTTTTGTTTGCATATGGTTTTGAGGAAGTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCAGATAGCCCTTTTTGTTTGCATATGGTTTTGAGGAAGTTAAC  796

seq1  TGTAATTCTGCTCTATAGTTCAGTTCCCTCTCCAACTCCTGCCTCATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCTGCTCTATAGTTCAGTTCCCTCTCCAACTCCTGCCTCATTTC  846

seq1  AACATTTATTTATGGAACACTAACTAGAACCAAAATAAAAACAGTGTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATTTATGGAACACTAACTAGAACCAAAATAAAAACAGTGTTCT  896

seq1  AGGTTTTCTCTTTAAAAAACTAAGTGCAACATTCAACCATCTAAAAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCTCTTTAAAAAACTAAGTGCAACATTCAACCATCTAAAAGTGA  946

seq1  TATTTTGATGAATTC  964
      |||||||||||||||
seq2  TATTTTGATGAATTC  961