BAC Information

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BAC

Clone NameB6Ng01-170K16
Chromosome2 (Build37)
Map Location 28,498,918 - 28,699,078
singlet/doubletdoublet
Overlap geneTsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b
Downstream geneBarhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K16.bB6Ng01-170K16.g
ACCDH961321DH961322
length1,156904
definitionDH961321|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K16, 5' end.DH961322|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,697,984 - 28,699,078)(28,498,918 - 28,499,835)
sequence
gaattcatggaatacctttgaaatactgtaattgggcaaatactcccact
tgggattaaaagtggggtctgcaaagttccaagtttatgaattttccaga
taaaggaaaataaagccagctttcatgtctgttgggtcttttgtcagaga
gcacaagatttgcaagcctcacctgacagttacaaaaggcctgaaggtca
ccctaccacaagtttcttgagcagaactagcagtctcagtccacagagct
cctccactcaggatggaacctattctgttccaagccactctcaggtttag
gaggcttttcaaccaatcaagattagacttgcctccttgagtctccaggt
cccatcatgatgaatggtactgcagcaacagcaagcagagggtctccctt
attacacatcttccctcttcccgtccttagactaaacacaccaggtagca
cacagactgagacacctgcaaattctactcacccgttacagacaagtcag
agtctctcaaaaacaagtactcagaagctaacacgacagctcacacatag
aagcccagcactcacaagcctaaggcaggaggactgctgagttttaggtc
agcctgggcaacaaagtgagttcccagctaccaggctagagtaagacaca
aacaaaacaagtgctaaattcaagcaggttctccacggctgttaggctaa
cactgaaaaatctccagggagatctaggaagcctctagaatacaacctct
acccatctcctcagcttcaagttcacctttaccctttgccagtctttctt
aaattcccagaatgtactgtgctcttccatgaagataatgctgagatgcc
tgattaacgatagcctatttggctagaaaagatcatatagtcatgtttct
ttgaagctatacatcaaatgctgaaagttattttctgggttggcgactgt
aggaggggttttatctttttatttttcttaaatgaactctattactttaa
taaccagaaaacatctcttagaaaaaaatttttcttagtattagaacaga
gcaacccactttagctgtgaagggcttctaatagtctattagtattcaca
cgagcttccctatatgcatatctgcctcgacatctttccactcccacttg
gtatac
gaattcctaatgaatttacctgaccctctgtgtgcctaatatctgtcccc
acagtaggcacacctgtgtactctgaccttgaggttttcctgcctggggt
ttttttgtttttgttttttgttttggaagaagtcttcttatgtgttccga
aaagaaacttgatcatggactaaaggtaactttttgggttatttgcttct
ttcaattttttttttaagatttatttattattatacataggtacactgta
actgacttcatacagaccagaagagggaatctgatctcattatgggaggt
tatgagctaccatgtggttgctgggctttgaactcaagacctgtggaata
tcaatcggagagtgctctcaccccctgagccatctcaccgatacgcttct
ttgaatttataatttattgcagaggcctttcttaagctatcttctagcct
atatgtgaagttgtggtgactacgaactttgcacgccggtgggttgatct
acactgtcttcttccaattttagaggctgcaggtattattattatattac
tcccagtgctgaatggggtgatattcaattctcgaactgcttaggctttt
tagagccagagaactgtgaacccagctcgtccagatttttagtaaacact
cccgagtaatgagaactggtgttgactctatcttatagttttataaagac
aaagaaaagactgactccgtgcttggatgggacacgaggttcttcccttt
aactatctctctctgtatgcgtctataatccccctttaagacaagtctta
ttggctacaggcatgaagaaagtatatgaatagttgagcattttgttgtt
gttttgaacatgtatgtttaaaaaatgtgaaatcatcagttgatacctat
gtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28697984_28699078
seq2: B6Ng01-170K16.b_110_1198 (reverse)

seq1  GTAT-CCAAGTGGGAGTGG-AAGATGTGCTGAGCAGATATGCTTAATGAG  48
      |||| |||||||||||||| ||||||| |   |||||||||| | ||  |
seq2  GTATACCAAGTGGGAGTGGAAAGATGT-CGAGGCAGATATGCAT-ATAGG  48

seq1  GGAGCTCGGTGTGGATAACTAATAGACTATTTGGAAGACCCTTCACAGCT  98
      | ||||| ||||| || |||||||||||| || |||| ||||||||||| 
seq2  GAAGCTC-GTGTGAAT-ACTAATAGACTA-TTAGAAG-CCCTTCACAGC-  93

seq1  TAAATTGGGTTGCTCTGTCTTAATACTATGAAAAATATTTTCTTAAG-GA  147
      |||| |||||||||||||  |||||||| ||||||| ||||  |||| ||
seq2  TAAAGTGGGTTGCTCTGTTCTAATACTAAGAAAAATTTTTTTCTAAGAGA  143

seq1  TGTTTTCTGGTTATTAAAGTAATAGAGTTTCATTTAAGAAAAATTAAAAG  197
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TGTTTTCTGGTTATTAAAGTAATAGAG-TTCATTTAAGAAAAATAAAAAG  192

seq1  ATATAACCCCTCCTACAGTTGCCATTCCCAG-AAATAACTTTCAGCATTT  246
      ||| ||||||||||||||| ||||  ||||| ||||||||||||||||||
seq2  ATAAAACCCCTCCTACAGTCGCCA-ACCCAGAAAATAACTTTCAGCATTT  241

seq1  GATGTATAGCCTTCAAAGAAACATGACTATATGATCTTTTCTAGCCAAAT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAG-CTTCAAAGAAACATGACTATATGATCTTTTCTAGCCAAAT  290

seq1  AGGCTATCGTTAATCAGGCATCTCAGCATTATCTTCATGGAAGAGCACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCGTTAATCAGGCATCTCAGCATTATCTTCATGGAAGAGCACAG  340

seq1  TACATTCTGGGAATTTAAGAAAGACTGGCAAAGGGTAAAGGTGAACTTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTGGGAATTTAAGAAAGACTGGCAAAGGGTAAAGGTGAACTTGA  390

seq1  AGCTGAGGAGATGGGTAGAGGTTGTATTCTAGAGGCTTCCTAGATCTCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGATGGGTAGAGGTTGTATTCTAGAGGCTTCCTAGATCTCCC  440

seq1  TGGAGATTTTTCAGTGTTAGCCTAACAGCCGTGGAGAACCTGCTTGAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTTTTCAGTGTTAGCCTAACAGCCGTGGAGAACCTGCTTGAATT  490

seq1  TAGCACTTGTTTTGTTTGTGTCTTACTCTAGCCTGGTAGCTGGGAACTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTGTTTTGTTTGTGTCTTACTCTAGCCTGGTAGCTGGGAACTCA  540

seq1  CTTTGTTGCCCAGGCTGACCTAAAACTCAGCAGTCCTCCTGCCTTAGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGCCCAGGCTGACCTAAAACTCAGCAGTCCTCCTGCCTTAGGCT  590

seq1  TGTGAGTGCTGGGCTTCTATGTGTGAGCTGTCGTGTTAGCTTCTGAGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGCTGGGCTTCTATGTGTGAGCTGTCGTGTTAGCTTCTGAGTAC  640

seq1  TTGTTTTTGAGAGACTCTGACTTGTCTGTAACGGGTGAGTAGAATTTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGAGAGACTCTGACTTGTCTGTAACGGGTGAGTAGAATTTGCA  690

seq1  GGTGTCTCAGTCTGTGTGCTACCTGGTGTGTTTAGTCTAAGGACGGGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCAGTCTGTGTGCTACCTGGTGTGTTTAGTCTAAGGACGGGAAG  740

seq1  AGGGAAGATGTGTAATAAGGGAGACCCTCTGCTTGCTGTTGCTGCAGTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATGTGTAATAAGGGAGACCCTCTGCTTGCTGTTGCTGCAGTAC  790

seq1  CATTCATCATGATGGGACCTGGAGACTCAAGGAGGCAAGTCTAATCTTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCATGATGGGACCTGGAGACTCAAGGAGGCAAGTCTAATCTTGA  840

seq1  TTGGTTGAAAAGCCTCCTAAACCTGAGAGTGGCTTGGAACAGAATAGGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAAAAGCCTCCTAAACCTGAGAGTGGCTTGGAACAGAATAGGTT  890

seq1  CCATCCTGAGTGGAGGAGCTCTGTGGACTGAGACTGCTAGTTCTGCTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGAGTGGAGGAGCTCTGTGGACTGAGACTGCTAGTTCTGCTCAA  940

seq1  GAAACTTGTGGTAGGGTGACCTTCAGGCCTTTTGTAACTGTCAGGTGAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGTGGTAGGGTGACCTTCAGGCCTTTTGTAACTGTCAGGTGAGG  990

seq1  CTTGCAAATCTTGTGCTCTCTGACAAAAGACCCAACAGACATGAAAGCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAATCTTGTGCTCTCTGACAAAAGACCCAACAGACATGAAAGCTG  1040

seq1  GCTTTATTTTCCTTTATCTGGAAAATTCATAAACTTGGAACTTTGCAGA  1095
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTTCCTTTATCTGGAAAATTCATAAACTTGGAACTTTGCAGA  1089

seq1: chr2_28498918_28499835
seq2: B6Ng01-170K16.g_68_971

seq1  GAATTCCAAATGAATTTACCTGACCCTCTGTGTGCCTAATATCTGTCCCC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGAATTTACCTGACCCTCTGTGTGCCTAATATCTGTCCCC  50

seq1  ACAGTAGGCACACCTGTGTACTCTGTCCTTGAGGTTTTCGTGCATGGGGT  100
      ||||||||||||||||||||||||| ||||||||||||| ||| ||||||
seq2  ACAGTAGGCACACCTGTGTACTCTGACCTTGAGGTTTTCCTGCCTGGGGT  100

seq1  TTTTTTGTTTTTGTTTTTTGTTTTGGAAGAAGTCTTCTTATGTGTTCCAA  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTTGTTTTTGTTTTTTGTTTTGGAAGAAGTCTTCTTATGTGTTCCGA  150

seq1  AAAGATACTTGATCATGGACTTAAAGTAACATTTTGGGTTATTTGCTTCT  200
      ||||| ||||||||||||||| || ||||| |||||||||||||||||||
seq2  AAAGAAACTTGATCATGGACTAAAGGTAACTTTTTGGGTTATTTGCTTCT  200

seq1  TTCAATTTTTTTTTAAAGATTTATTTATTATTATACATAGGTACACTGTA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTTTTTTTAAGATTTATTTATTATTATACATAGGTACACTGTA  250

seq1  ACTGACTTCAGACAGACCAGAAGAGGGAATCTGATCTCATTATGGGTGGT  300
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  ACTGACTTCATACAGACCAGAAGAGGGAATCTGATCTCATTATGGGAGGT  300

seq1  TATGAGCTACCATGTGGTTGCTGGGCTTTGAACTCAGGACCTGTGGAAGA  350
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TATGAGCTACCATGTGGTTGCTGGGCTTTGAACTCAAGACCTGTGGAATA  350

seq1  GCAGTCAGTGAGTGCTCTCACCCGCTGAGCCATCTCACCAGCACGCTTCT  400
       || || | |||||||||||||| |||||||||||||||   ||||||||
seq2  TCAATCGGAGAGTGCTCTCACCCCCTGAGCCATCTCACCGATACGCTTCT  400

seq1  TTGAATTTATAATTTATTGCAGAGGCCTTTCTTAAGCTATCTTCTAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTATAATTTATTGCAGAGGCCTTTCTTAAGCTATCTTCTAGCCT  450

seq1  ATTTGTGAAGTTGTGGTGACTTTGAACTTTGCACACAGCTGGGTTGATCT  500
      || ||||||||||||||||||  ||||||||||| | | |||||||||||
seq2  ATATGTGAAGTTGTGGTGACTACGAACTTTGCACGCCGGTGGGTTGATCT  500

seq1  ATTCTGTCTTCTTCAAAATTTTTGAGGCTGCAGGTATTATTATTATATTA  550
      |  |||||||||||  |||||| |||||||||||||||||||||||||||
seq2  ACACTGTCTTCTTC-CAATTTTAGAGGCTGCAGGTATTATTATTATATTA  549

seq1  GTTCCAGTGCTGTACTGAGTGATATTCACTTCTGGAACTGCCTGGGTTCT  600
       | ||||||||| |  | |||||||||| |||| ||||||| | || | |
seq2  CTCCCAGTGCTGAATGGGGTGATATTCAATTCTCGAACTGCTTAGGCTTT  599

seq1  TTAATGCCAGGTTTCTGTGATTCCAGCTCGTCCTGAGCTTTAGTAAATAC  650
      |||  |||||    ||||||  ||||||||||| ||  ||||||||| ||
seq2  TTAGAGCCAGAGAACTGTGAACCCAGCTCGTCCAGATTTTTAGTAAACAC  649

seq1  TCCCGAGTAATGAGAACTGGTGTTGACTCTATGTTAATAGTTCTATAATG  700
      |||||||||||||||||||||||||||||||| || |||||| ||||| |
seq2  TCCCGAGTAATGAGAACTGGTGTTGACTCTATCTT-ATAGTTTTATAAAG  698

seq1  ACAAAGAAAATGAGTGACTCCAGGGCTGGATGGGACATTGAGGTTAGTTA  750
      |||||||||| || |||||||  |  |||||||||||  ||||||  || 
seq2  ACAAAGAAAA-GACTGACTCCGTGCTTGGATGGGACA-CGAGGTT-CTTC  745

seq1  CCTTTAAACAATGCTTCCCTGTATGCTGTCTTATAAATCCCCCTTTTAAA  800
      ||||| ||| ||   || |||||||| ||| ||| |||||||||||  ||
seq2  CCTTT-AACTATCTCTCTCTGTATGC-GTC-TAT-AATCCCCCTTT--AA  789

seq1  GACAAGTCTTATTGGCTACAGGCATGAAAGAAAAGTATATGAATTAGTTG  850
      ||||||||||||||||||||||||||||   |||||||||||| ||||||
seq2  GACAAGTCTTATTGGCTACAGGCATGAA--GAAAGTATATGAA-TAGTTG  836

seq1  AGCATTTTGTTGTTGTTTTGAACATGTATGTTTAGAAAATGTTAGATCAT  900
      |||||||||||||||||||||||||||||||||| ||||||| | |||||
seq2  AGCATTTTGTTGTTGTTTTGAACATGTATGTTTAAAAAATGTGAAATCAT  886

seq1  CAGTTGATAACTATGTAA  918
      ||||||||| ||||||||
seq2  CAGTTGATACCTATGTAA  904