BAC Information

Click to search

BAC

Clone NameB6Ng01-170N03
Chromosome6 (Build37)2 (Build37)
Map Location 134,129,381 - 134,130,55643,609,151 - 43,609,200
singlet/doubletsingletsinglet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170N03.bB6Ng01-170N03.g
ACCDH961437DH961438
length1,172481
definitionDH961437|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N03, 5' end.DH961438|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,129,381 - 134,130,556)(43,609,151 - 43,609,200)
sequence
gaattcttataagctgtggcttaaggggcaggtccttgtcactttgttgg
taaccttggttaaaagaggtcagtggaaaactcagaattaaacccagcta
ggtattcacttttacactaaattcctatatttcaatgaagcattcttctg
tgagttattaataaagtacttagcgtatatagagcattcaaagctgagat
agcacatatccacccccacccccaaatacccccaaacactgtgattatag
aagtgtgccaccacacccacagtgacatgacaaatctacctcatgatctt
gaaaacaaatcctgtgttccatgtcagccatactcggtcacagtctcttg
ggtgagttccaatattgagacaaaatagagcttcagttttttaggaaata
ggtaagcaaggtgtttgggcagcctcagggatcgggcatcactgatagaa
tttaatgtgctgaagttggtgtaggaaagtggtacagttaataaagcaaa
ggaggaaaacatgtgagcaaaacctaaagtcagagtatttggacacagca
aggaaataaagcaatactatgtatacatacacatatataaatatacatat
acatgcatgtgtgtatatatacatacatatactcgtgtatatgcatatgt
acatacatatatgcatatgtatctatactacacacatgcgtgagtgtgca
cgcgtatacacacacacacacacacacacacaatgtataaaacctggaaa
ccaaggccctggtggcccagcccagagcagttggcggtacactgcctctt
tctttgagatgttttccctcctgtttaatcagctcccacctggtgagaag
aaaatgcacaagaggctcccgtgggtgggtgcgcactcctggtctcccac
tgccaggcacacgagtgttagccctccccactcagtgatgagtgacgctg
aagctaatgcctgtctcagagtcgggtctctctgctatggtgctcgattc
tcatctgtctgctgtgaaaccaaactgagctgctgagggatggaaagggg
gctggtggagcatcaccttttattttattgtaagtgactaagaaagctct
tcaaaggcgaaacttagtcattgattacagcacgcttttgtttaagtcgg
gttggacaagttttgatacaga
cttaggtattcaagatttaaatcccttatggcatacaatttgcagctttc
tcctgctctgtgaattatctatttcttgatatggtatccatggaagcaca
aacatttttagttttagattgggccatcaactttccatcatggagagagg
aggaacaagtgaggccctattgctccctgaggatctagagacagtggttt
ctgggggaggaaaatgaagttgccttcagtgttgtagacactggtaaatt
gtccatgatcctttaaatagctccttacctgtgctcatgtgagaaacctt
aacagaagtcatcatacacacacacacacacacacacacacacacacaca
cacacactcactcatgcatagggaaggggggaggaaggtagctagttggg
aagaggagggggtcaggaggagtaggagggggaacttaggggtcaatggg
tgtgaatatggtgaatatatatatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134129381_134130556
seq2: B6Ng01-170N03.b_48_1219

seq1  GAATTCTTATAAGCTGTGGCTTAAGGGGCAGGTCCTTGTCACTTTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAGCTGTGGCTTAAGGGGCAGGTCCTTGTCACTTTGTTGG  50

seq1  TAACCTTGGTTAAAAGAGGTCAGTGGAAAACTCAGAATTAAACCCAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGGTTAAAAGAGGTCAGTGGAAAACTCAGAATTAAACCCAGCTA  100

seq1  GGTATTCACTTTTACACTAAATTCCTATATTTCAATGAAGCATTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCACTTTTACACTAAATTCCTATATTTCAATGAAGCATTCTTCTG  150

seq1  TGAGTTATTAATAAAGTACTTAGCGTATATAGAGCATTCAAAGCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATTAATAAAGTACTTAGCGTATATAGAGCATTCAAAGCTGAGAT  200

seq1  AGCACATATCCACCCCCACCCCCAAATACCCCCAAACACTGTGATTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATATCCACCCCCACCCCCAAATACCCCCAAACACTGTGATTATAG  250

seq1  AAGTGTGCCACCACACCCACAGTGACATGACAAATCTACCTCATGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCCACCACACCCACAGTGACATGACAAATCTACCTCATGATCTT  300

seq1  GAAAACAAATCCTGTGTTCCATGTCAGCCATACTCGGTCACAGTCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATCCTGTGTTCCATGTCAGCCATACTCGGTCACAGTCTCTTG  350

seq1  GGTGAGTTCCAATATTGAGACAAAATAGAGCTTCAGTTTTTTAGGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTCCAATATTGAGACAAAATAGAGCTTCAGTTTTTTAGGAAATA  400

seq1  GGTAAGCAAGGTGTTTGGGCAGCCTCAGGGATCGGGCATCACTGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCAAGGTGTTTGGGCAGCCTCAGGGATCGGGCATCACTGATAGAA  450

seq1  TTTAATGTGCTGAAGTTGGTGTAGGAAAGTGGTACAGTTAATAAAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGCTGAAGTTGGTGTAGGAAAGTGGTACAGTTAATAAAGCAAA  500

seq1  GGAGGAAAACATGTGAGCAAAACCTAAAGTCAGAGTATTTGGACACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAACATGTGAGCAAAACCTAAAGTCAGAGTATTTGGACACAGCA  550

seq1  AGGAAATAAAGCAATACTATGTATACATACACATATATAAATATACATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAAGCAATACTATGTATACATACACATATATAAATATACATAT  600

seq1  ACATGCATGTGTGTATATATACATACATATACTCGTGTATATGCATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGTGTGTATATATACATACATATACTCGTGTATATGCATATGT  650

seq1  ACATACATATATGCATATGTATCTATACTACACACATGCGTGAGTGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATATGCATATGTATCTATACTACACACATGCGTGAGTGTGCA  700

seq1  CGCGTATACACACACACACACACACACACACAATGTATAAAACCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTATACACACACACACACACACACACACAATGTATAAAACCTGGAAA  750

seq1  CCAAGGCCCTGGTGGCCCAGCCCAGAGCAGTTGGCGGTACACTGCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCCTGGTGGCCCAGCCCAGAGCAGTTGGCGGTACACTGCCTCTT  800

seq1  TCTTTGAGATGTTTTCCCTCCTGTTTAATCAGCTCCCACCTGGTGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGATGTTTTCCCTCCTGTTTAATCAGCTCCCACCTGGTGAGAAG  850

seq1  AAAATGCACAAGAGGCTCCCGTGGGTGGGTGCGCACTCCTGGTCTCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACAAGAGGCTCCCGTGGGTGGGTGCGCACTCCTGGTCTCCCAC  900

seq1  TGCCAGGCACACGAGTGTTAGCCCTCCCCACTCAGTGATGAGTGACGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCACACGAGTGTTAGCCCTCCCCACTCAGTGATGAGTGACGCTG  950

seq1  AAGCTAATGCCTGTCTCAGAGTCGGGTCTCCTCTGCTAATGGTGCTCGAT  1000
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AAGCTAATGCCTGTCTCAGAGTCGGGTCT-CTCTGCT-ATGGTGCTCGAT  998

seq1  TCTCATCTGTCTGCTGTGAAACCAAACTGAGCTGCTGAGGGAAGGGAAGG  1050
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TCTCATCTGTCTGCTGTGAAACCAAACTGAGCTGCTGAGGGATGGAAAGG  1048

seq1  GGGCTGGTGGAGCATCAACTTTTATTTGTATGTAAGTGACTTAGAAGGCT  1100
      ||||||||||||||||| |||||||||   ||||||||||| |||| |||
seq2  GGGCTGGTGGAGCATCACCTTTTATTTTATTGTAAGTGACTAAGAAAGCT  1098

seq1  C-TCAAAGGCGAACTTAAGTCA-TGATTAACAGCAGCTTTTTGTTTAAGT  1148
      | |||||||||||  | ||||| ||||| ||||||   ||||||||||||
seq2  CTTCAAAGGCGAAACTTAGTCATTGATT-ACAGCACGCTTTTGTTTAAGT  1147

seq1  CGGTGTTGGGACAGTGTTTTGATACAGA  1176
      ||| ||| |||||  |||||||||||||
seq2  CGG-GTT-GGACA-AGTTTTGATACAGA  1172

seq1: chr2_43609151_43609200
seq2: B6Ng01-170N03.g_377_557 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CACACACATATATATATTCACCATATTCACACCCATTGACCCCTAAGTTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  CCCCTCCTACTCCTCCTGACCCCCTCCTCTTCCCAACTAGCTACCTTCCT  100

seq1  ---------CACACACA----------------TATATATATGTGTGTGT  25
               |  |  ||                | | | | |||||||||
seq2  CCCCCCTTCCCTATGCATGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTGTTTGTGTGTGTGTATG------TCTGTT  50
      |||| ||||||||||||||      ||||||
seq2  GTGTGTGTGTGTGTGTATGATGACTTCTGTT  181