BAC Information

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BAC

Clone NameB6Ng01-170N08
Chromosome2 (Build37)
Map Location 142,776,882 - 142,777,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170N08.bB6Ng01-170N08.g
ACCDH961447DH961448
length1,163951
definitionDH961447|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N08, 5' end.DH961448|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagttttatgtttgataccgaattctttacagaatgaaataaaa
attttactagaataggatagctcattatctgtcttaataagtttaggcaa
tctcatagcattaaaggcctgtaggcaatgaacgattacgtttttagaag
cctctcctgtatgcagagaagcaaaaagaaatcctgaacaagtatcgatt
caaacatgtatatattttaattttccaaatttcacataatgggttatatc
catttgccaaatatgattatgcataagacctctaggattgactcctaaat
gtggcactggagataatgtaatacaattaggacattgtcttaaaatcatt
ttcacttgctccttagtgatcttatgtcggagccttaaggtatggctaga
gagatgaaacctttcatgatcacgtttggtcaaagcaacaggatccgaaa
ttacagcttctcctattagagctctgtcaatgcaatcattgccttcagct
aaaggtccaggaagaccagagtgagatcatatgtagcaaatataaaacga
atttttctgggcaagaatgatgttttgtaattctgaaaataaggatcctg
acggcatattaaagttaaatgtaccacaggtctccaataagggtactgat
tgtgcaacatataaactgtcagtaaagatattaaaagcctcatgtacagg
ctgaaagaccttcagtactgctgttaattcggctaactgagccgaaaggc
taggagtctctatgataacttgttgattattaataagatatctagctcgc
cttttagaggagccatcagtaaaaatcaatagagcattatataaaagcta
taaggaagtcatttttggaaatatcacttcatgtacattgaaaaattttt
atcaacctatcttggggatagtggctgtctatagtttcttttaaccctat
ttttgcaagcacccatctgtactatgttgtttcagccaagtgtcttgact
tacattggaaggctgacaataatatctggctctttgccgaaaaaagttaa
tgtctgcttcttccagtgaataagcatctgggacactgctttatgaacgc
agaatttagttaggagaaaatctccgaaggatcccatatagggatttctt
gctcatgtccagt
gaattctttgttcagctctgagccccatttttaagggggttatttgattt
tctggagtccaccttcttgagttctttttatatattggatattagtcccc
tatctgatttaggataagtaaagattctttccaatctgttggtggtcttt
ttgtcttattgacggtgtcttttgcattgcagaagctttgaaattttatg
aggtcccatttgttgtgcttacagcacaagccattgatgttctattcagg
aatttttcccctgtacccatatcttcaaggcttttccctactttctcctc
tataagtttcagtgtctctggttttatgtggagttttttaatccacttgt
ttttcctggtattagtaagcatacataacaatcaatatatatttgcacat
ttctgtgagcagatctgtacagatctaggaatgtggactgtcttgcagtg
atgctatatataatcaaatggatgatgtcttaattctttacaatgatcct
attaaaattcttagaattaaatttgcctttatcaattttttttatagttg
gacttttattcagtccatttctgatactcataagtgcaaggagcttctac
atagtaactagacttgcttttactcagagcacattccaagagtttgtaaa
acagttaagcagctgggctgtggtggcacatgcctttaatcccagcactt
gggagtcagaggcaggcagatttctgacgccgaggccagcctggtctaca
aagtgagtgtcaggacacccagggctacacagagaaaccctgtcttgaaa
acaaacgaagaaacaaacaaacaaacaaacaaaaaaaaaccaaaaaaaaa
aaaaaacaacaaagaacaacaaaacaaagcaaagcaaaaaaaaaaaaagt
tagcaaagtcataaaatggactatgtttagtatagtgctagacagagata
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776882_142777698
seq2: B6Ng01-170N08.g_71_418 (reverse)

seq1  AAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCC  350
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAA  450
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  500
                |||||||| ||  |||| ||||||||||||||||||||||
seq2  ----------AAGTGGATTAAAAAACTCCACATAAAACCAGAGACACTGA  40

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  550
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AACTTATAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATATGGGTACAGGG  90

seq1  GAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAAT  600
      |||||||||||||| |||| | |||||||||||||||||||  |      
seq2  GAAAAATTCCTGAATAGAACATCAATGGCTTGTGCTGTAAGCAC------  134

seq1  TGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACA  650
        ||||||||||||| || ||| | ||||| |||||||| ||||||||||
seq2  -AACAAATGGGACCTCATAAAATTTCAAAGCTTCTGCAATGCAAAAGACA  183

seq1  CTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACC  700
      | ||| ||||||||||||||||||||||||| | |||||| |||||||| 
seq2  CCGTCAATAAGACAAAAAGACCACCAACAGA-TTGGAAAGAATCTTTACT  232

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAA  750
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATAAAAAGAACTCAA  282

seq1  GAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  800
      ||||||||||  ||||||||||||||||||| || |||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCCTT-AAAAATGGGGCTCAG  331

seq1  AACTGAACAAAGAATTC  817
      | |||||||||||||||
seq2  AGCTGAACAAAGAATTC  348