BAC Information

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BAC

Clone NameB6Ng01-170P11
Chromosome2 (Build37)
Map Location 143,747,157 - 143,887,350
singlet/doubletdoublet
Overlap geneDstn, Rrbp1, 4930517K23Rik
Upstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P11.bB6Ng01-170P11.g
ACCDH961549DH961550
length1,1321,049
definitionDH961549|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P11, 5' end.DH961550|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,747,157 - 143,748,299)(143,886,302 - 143,887,350)
sequence
gaattcagcttttaatctcaagtgattcataactctaataccaaactaat
ctcttagtggctgacattgccactagacatgcttacatgttgctagcttg
attatttaattttctgttatcttaaaatttaagaattacattttaataat
gttaaaaacaacaaaaacaattttaagtgtctagttgaagtgaaggtatg
taagagtctagccctccactactacagtcagacataaaagagcgcctgag
aaatggagatttcactcctagcacagctcctatgctggtgacagtggctg
acttttggatctcactgaaggaagtcggttctttcgacatttgtatatta
tcttataggctgtgcctcttttaaccttatcacagaaaaagaaaaaacag
agttttcaatgattgttcttctgttggcttattgatgtaattagcattta
attttaataaaatacaattgctagcattctcaaatggttatacagctgac
acacaggtaagattgagcttgttgcttatgggcagatcttaaagtcattg
agctttcaggaattctcaggttgtgaaattttgttacagaaatgtatata
catttaaattttttctcattgctccttaaaaaaaggaaaacaacaaaggt
gaaaatctaaaccactataattactcatctgtggcactacctaccagccc
agaaccttgcgtatgccgtatgcctgcagtcactctactaagccatccct
agccctattaaaatactgaatcagtatttcaccggtagaaaataaaataa
taagttttacatattttaattattggaaattctgtatatattttacacta
aagcacatctcacgctttggtgttgtgcacctattagcttagcattctgg
aggcagggcaggggcagtcttgagttcttggccagtttggaacttaaaca
tctaaggtttttgtttgtttgtttgtttgtttgtttgttttcaagacggg
tttctctgtgtagacctgctgtctggaactcacttctgtagacagcctgg
cctcgacctcagaaatccgcctgcctctgcctctcgagtgctgggtacag
gtctgccaccaacatgtcccgcagcatctaag
gaattctgtgggacagtggtgaagaaagaatgacaggtgagaggtaggct
tggatagactttgtggggaatggcaggagggctttgaggagtgctaggaa
agcaagcaatgtcctaggaaagagattcccgcagctaggtagctcttcag
agtccttagggtacccccagtgaacactcatatgggtacttttcctctat
aagccagactcagcctttagggaagagaagaaaatgtatgtgtgcagata
tgcacatgcatgtgtgtgcacaagcagagagagaaagagagagagacaga
gagacggggaagagatattacaggttcaggtgttgttctaaagacatctc
ccaaacacacacacacacacacacacacacacacacacacacacacacac
acactcacacacacacacacacactttacgagttaagaaacagatagggg
gctgttactggttttgacaagcacttgattctcattttatatgatgcaga
ggagtcaaaaggaaaggaaagataagtggtaagtgggtgagatcatgcta
aaaggagatactgttgttctgctacaaagtatctcctagacctcttaagg
acttgagatgctgtaggaaaggcaatttggcagattttctgaagctacat
tggactgggagaagagttttagacattgtctaaatacatattgttttaat
gaccgtgtgttattaccagacgacaataaatgctgtgagagtggtctatt
attacagtggttctcaacatgtgggtcgtgatccctttggcaaacctcta
cctccaaaaaatatttacattacagtccataacagtagcaaaattatagt
catgaagtagcagtgaaaatgattttatggttggggtttccgtacgaact
attcgcagcgtctggaagggtgggaatcctctgtgtcattgctaatatga
tcaattgtttggtcctaagccactacacatagctgatgggagttgtatca
tacagccactaggaaagtttcctcaaaagctaaaaatagactaccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143747157_143748299
seq2: B6Ng01-170P11.b_44_1175

seq1  GAATTCAGCTTTTAATCTCAAGTGATTCATAACTCTAATACCAAACTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTTAATCTCAAGTGATTCATAACTCTAATACCAAACTAAT  50

seq1  CTCTTAGTGGCTGACATTGCCACTAGACATGCTTACATGTTGCTAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTGGCTGACATTGCCACTAGACATGCTTACATGTTGCTAGCTTG  100

seq1  ATTATTTAATTTTCTGTTATCTTAAAATTTAAGAATTACATTTTAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAATTTTCTGTTATCTTAAAATTTAAGAATTACATTTTAATAAT  150

seq1  GTTAAAAACAACAAAAACAATTTTAAGTGTCTAGTTGAAGTGAAGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACAACAAAAACAATTTTAAGTGTCTAGTTGAAGTGAAGGTATG  200

seq1  TAAGAGTCTAGCCCTCCACTACTACAGTCAGACATAAAAGAGCGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTAGCCCTCCACTACTACAGTCAGACATAAAAGAGCGCCTGAG  250

seq1  AAATGGAGATTTCACTCCTAGCACAGCTCCTATGCTGGTGACAGTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATTTCACTCCTAGCACAGCTCCTATGCTGGTGACAGTGGCTG  300

seq1  ACTTTTGGATCTCACTGAAGGAAGTCGGTTCTTTCGACATTTGTATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGATCTCACTGAAGGAAGTCGGTTCTTTCGACATTTGTATATTA  350

seq1  TCTTATAGGCTGTGCCTCTTTTAACCTTATCACAGAAAAAGAAAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGGCTGTGCCTCTTTTAACCTTATCACAGAAAAAGAAAAAACAG  400

seq1  AGTTTTCAATGATTGTTCTTCTGTTGGCTTATTGATGTAATTAGCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAATGATTGTTCTTCTGTTGGCTTATTGATGTAATTAGCATTTA  450

seq1  ATTTTAATAAAATACAATTGCTAGCATTCTCAAATGGTTATACAGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAAAATACAATTGCTAGCATTCTCAAATGGTTATACAGCTGAC  500

seq1  ACACAGGTAAGATTGAGCTTGTTGCTTATGGGCAGATCTTAAAGTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTAAGATTGAGCTTGTTGCTTATGGGCAGATCTTAAAGTCATTG  550

seq1  AGCTTTCAGGAATTCTCAGGTTGTGAAATTTTGTTACAGAAATGTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAGGAATTCTCAGGTTGTGAAATTTTGTTACAGAAATGTATATA  600

seq1  CATTTAAATTTTTTCTCATTGCTCCTTAAAAAAAGGAAAACAACAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATTTTTTCTCATTGCTCCTTAAAAAAAGGAAAACAACAAAGGT  650

seq1  GAAAATCTAAACCACTATAATTACTCATCTGTGGCACTACCTACCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAAACCACTATAATTACTCATCTGTGGCACTACCTACCAGCCC  700

seq1  AGAACCTTGCGTATGCCGTATGCCTGCAGTCACTCTACTAAGCCATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTGCGTATGCCGTATGCCTGCAGTCACTCTACTAAGCCATCCCT  750

seq1  AGCCCTATTAAAATACTGAATCAGTATTTCACCGGTAGAAAATAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATTAAAATACTGAATCAGTATTTCACCGGTAGAAAATAAAATAA  800

seq1  TAAGTTTTACATATTTTAATTATTGGAAATTCTGTATATATTTTACACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTACATATTTTAATTATTGGAAATTCTGTATATATTTTACACTA  850

seq1  AAGCACATCTCAGGCTTTGGTGTTGTGCACCTATTAGCTTAGCATTCTGG  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGCACATCTCACGCTTTGGTGTTGTGCACCTATTAGCTTAGCATTCTGG  900

seq1  AGGCAGGGGCAGGGGCAGTCTTGAGTTCTTGGCCAGTTTGGAACTTAAAC  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCA-GGGCAGGGGCAGTCTTGAGTTCTTGGCCAGTTTGGAACTTAAAC  949

seq1  ATCTAAGGGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCA  1000
      ||||||||  |||||||||||||||||||||   |||||||   ||||||
seq2  ATCTAAGG--TTTTTGTTTGTTTGTTTGTTT--GTTTGTTT--GTTTTCA  993

seq1  AGACGGGGTTTCTCTGTGTAGACCTGGCTGTCCTGGAACTCAC-TCTGTA  1049
      |||| |||||||||||||||||||| ||||| ||||||||||| ||||||
seq2  AGAC-GGGTTTCTCTGTGTAGACCT-GCTGT-CTGGAACTCACTTCTGTA  1040

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTCGAGT  1099
      || ||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GA-CAGCCTGGCCTCGACCTCAGAAATCCGCCTGCCTCTGCCTCTCGAGT  1089

seq1  GCTGGGTTACAGGTCTG-CACCACCATGCCCGGCAAGCATCTAAG  1143
      |||||| |||||||||| ||||| |||| || || ||||||||||
seq2  GCTGGG-TACAGGTCTGCCACCAACATGTCCCGC-AGCATCTAAG  1132

seq1: chr2_143886302_143887350
seq2: B6Ng01-170P11.g_70_1118 (reverse)

seq1  TTGTGGTAGTTCTATTTTTAGCTTTTGA-GAAACTTTCCTAGTGGCTGTA  49
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TTGTGGTAG-TCTATTTTTAGCTTTTGAGGAAACTTTCCTAGTGGCTGTA  49

seq1  TTGATTACACTCCCATCAGCTATGTGTAGTGGCTTAGGACCAAACAATTG  99
       ||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  -TGATACAACTCCCATCAGCTATGTGTAGTGGCTTAGGACCAAACAATTG  98

seq1  ATCATTATTAGCAATGACACAGAGG-TTCCCACCCTTCCTGACGCTGCGA  148
      |||| |||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ATCA-TATTAGCAATGACACAGAGGATTCCCACCCTTCCAGACGCTGCGA  147

seq1  CTAGTTCGTACGG-AACCCCAACCATAAAATCATTTTCACTGCTACTTCA  197
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCGTACGGAAACCCCAACCATAAAATCATTTTCACTGCTACTTCA  197

seq1  TGACTATAATTTTGCTACTGTTATGGACTGTAATGTAAATATTTTTTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATAATTTTGCTACTGTTATGGACTGTAATGTAAATATTTTTTGGA  247

seq1  GGTAGAGGTTTGCCAAAGGGATCACGACCCACATGTTGAGAACCACTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGTTTGCCAAAGGGATCACGACCCACATGTTGAGAACCACTGTA  297

seq1  ATAATAGACCACTCTCACAGCATTTATTGTCGTCTGGTAATAACACACGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGACCACTCTCACAGCATTTATTGTCGTCTGGTAATAACACACGG  347

seq1  TCATTAAAACAATATGTATTTAGACAATGTCTAAAACTCTTCTCCCAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAACAATATGTATTTAGACAATGTCTAAAACTCTTCTCCCAGTC  397

seq1  CAATGTAGCTTCAGAAAATCTGCCAAATTGCCTTTCCTACAGCATCTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGCTTCAGAAAATCTGCCAAATTGCCTTTCCTACAGCATCTCAA  447

seq1  GTCCTTAAGAGGTCTAGGAGATACTTTGTAGCAGAACAACAGTATCTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAGAGGTCTAGGAGATACTTTGTAGCAGAACAACAGTATCTCCT  497

seq1  TTTAGCATGATCTCACCCACTTACCACTTATCTTTCCTTTCCTTTTGACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATGATCTCACCCACTTACCACTTATCTTTCCTTTCCTTTTGACT  547

seq1  CCTCTGCATCATGTAAAATGAGAATCAAGTGCTTGTCAAAACCAGTAACA  597
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCATCATATAAAATGAGAATCAAGTGCTTGTCAAAACCAGTAACA  597

seq1  GCCCCCTATCTGTTTCTTAACTCGTAAAGTGTGTGTGTGTGTGTGTGAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTATCTGTTTCTTAACTCGTAAAGTGTGTGTGTGTGTGTGTGAGT  647

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  697

seq1  GGGAGATGTCTTTAGAACAACACCTGAACCTGTAATATCTCTTCCCCGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTCTTTAGAACAACACCTGAACCTGTAATATCTCTTCCCCGTC  747

seq1  TCTCTGTCTCTCTCTCTTTCTCTCTCTGCTTGTGCACACACATGCATGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTCTTTCTCTCTCTGCTTGTGCACACACATGCATGTG  797

seq1  CATATCTGCACACATACATTTTCTTCTCTTCCCTAAAGGCTGAGTCTGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGCACACATACATTTTCTTCTCTTCCCTAAAGGCTGAGTCTGGC  847

seq1  TTATAGAGGAAAAGTACCCATATGAGTGTTCACTGGGGGTACCCTAAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGAAAAGTACCCATATGAGTGTTCACTGGGGGTACCCTAAGGA  897

seq1  CTCTGAAGAGCTACCTAGCTGCGGGAATCTCTTTCCTAGGACATTGCTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAGCTACCTAGCTGCGGGAATCTCTTTCCTAGGACATTGCTTG  947

seq1  CTTTCCTAGCACTCCTCAAAGCCCTCCTGCCATTCCCCACAAAGTCTATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAGCACTCCTCAAAGCCCTCCTGCCATTCCCCACAAAGTCTATC  997

seq1  CAAGCCTACCTCTCACCTGTCATTCTTTCTTCACCACTGTCCCACAGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTACCTCTCACCTGTCATTCTTTCTTCACCACTGTCCCACAGAAT  1047

seq1  TC  1049
      ||
seq2  TC  1049