BAC Information

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BAC

Clone NameB6Ng01-171J10
Chromosome2 (Build37)
Map Location 118,112,531 - 118,280,723
singlet/doubletdoublet
Overlap geneGpr176, 1700054M17Rik, Eif2ak4
Upstream geneRasgrp1, Thbs1, Fsip1
Downstream geneSrp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171J10.bB6Ng01-171J10.g
ACCGA000432GA000433
length1,101474
definitionB6Ng01-171J10.b B6Ng01-171J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,279,650 - 118,280,723)(118,112,531 - 118,113,010)
sequence
gaattctttcctgtatgaaagtttcagaagaaaaaaacaaaacctcccac
ccacctttgtctgatttcattcccacatctaccaaatgcagggtgcacaa
tacaccttaccgttttaaattcagtatgttatttcttgccacatatcttg
caaaagggacctgaaagaagaaagttttaaagacccacatcatgaggtgc
aaagtactacattcttttcgattttaaaacagctctgctgggctagaacc
cacacatcactttaaggtcaggcacccacttaatagtgaggtcagaacca
actgcccagccagcacaccctatgatgtcagcacaatgatgaaatagctg
ccgatgcatttctttaaaaagtataccctagccattaagcagcacgtgac
cgtaccctgagagcacgcacactggggtgctcgtgtgtgcttcagctgca
gtaggctctactgcagactctgctcactgcatttctgagggctgcgaaac
attcttcttccttttttgttgaaaacatggtcatattttatcatgctcat
ttgaaatatgcataggttattggtttattgtgatttttaagatgtagttt
atggattagagagatggcttagagggtagtaagacttgtcatgcatgctg
gctagttttcagtggacacaggttcagccattttcttgattgatgtttga
ttcaggagaggcctagcctatcgtggataatgttctccttcctgggctgg
tctctggtgtgccagccgggcaaagctgtttcctggcttccatatgcaca
tttctacacaattctttttcgttctctcacatacacttttagtacatttt
ttaaaaattctcattttaataataacagtccaaaattgagtggagtgctt
ttcttcttatggtgaatttaagttcctgagttccatatcggtctccttag
aaggaaattatttatttttatgtatggttatttttgtcctgcaatgcaat
atgccaatatccccctaagactatcaatttacaagaacagctggtgaagc
tgcacacgtaaggcgctggaatagacttaggttcctctagaggaagcagt
c
tctaaagcactctgcattagtttggtgatagtgactcaagaaaacatcaa
cagtgatcacacacacacacacacacacacacacacacacacacacggac
tcccacttattcaggataagagttgtttatactgatgccaccagtcacca
tggtgataagctgaacaataatgatttatgagaatcctcctgatttggaa
gcctttcgtcactggtacacagatttgagtctaaccaaagcatctttctt
tacatagtgttacaggcaagacttaaaaatatgctcaggatctattaatg
taatagtccactggaagatattgtctatgaagagatgtacacattgcggt
atatttgattttcactgctagaagagtctttatcccttaaagaacttctc
acaaataaattattccctttgtgagaatcaaaatcctgaggattttcatg
ttgttttttgaatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118279650_118280723
seq2: B6Ng01-171J10.b_42_1142 (reverse)

seq1  GACTGC-TCCTCTAGAGGACCCAAGTTCAATTCCCAGCGCC-TACGTG-G  47
      |||||| |||||||||||| || |  || ||| |||||||| |||||| |
seq2  GACTGCTTCCTCTAGAGGAACCTAAGTCTATT-CCAGCGCCTTACGTGTG  49

seq1  CAGC-TCA-CAGCTGT--CTGTAA--TGATAGTTCTA-GGGGATAT--GC  88
      |||| ||| |||||||   |||||  |||||||  || ||||||||  ||
seq2  CAGCTTCACCAGCTGTTCTTGTAAATTGATAGTCTTAGGGGGATATTGGC  99

seq1  ATA-TGCA-TGCA-GACAAAAATAACCATACAT-AAAATAAATAATTTCC  134
      ||| |||| |||| ||||||||||||||||||| ||||||||||||||||
seq2  ATATTGCATTGCAGGACAAAAATAACCATACATAAAAATAAATAATTTCC  149

seq1  -TCTAA-GAGACCGATATGGAACTCAGGAACTT-AATTCACCATAAGA--  179
       ||||| |||||||||||||||||||||||||| ||||||||||||||  
seq2  TTCTAAGGAGACCGATATGGAACTCAGGAACTTAAATTCACCATAAGAAG  199

seq1  GAAAGCACT-CACTCA--TTTTGACTGTTATTAT--AAATGAGAATTTTT  224
       |||||||| ||||||  ||| ||||||||||||  ||||||||||||||
seq2  AAAAGCACTCCACTCAATTTTGGACTGTTATTATTAAAATGAGAATTTTT  249

seq1  -AAAAATGTACT-AAAGTGTATGTGAGAGAACGAAAAAGAATTGTGTAGA  272
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTACTAAAAGTGTATGTGAGAGAACGAAAAAGAATTGTGTAGA  299

seq1  AATGTGCATATGGAAGCCAGGAAACAGCTTTGCCCGGCTGGCACACCAGA  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATATGGAAGCCAGGAAACAGCTTTGCCCGGCTGGCACACCAGA  349

seq1  GACCAGCCCAGGAAGGAGAACATTATCCACGATAGGCTAGGCCTCTCCTG  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCCAGGAAGGAGAACATTATCCACGATAGGCTAGGCCTCTCCTG  399

seq1  AATCAAACATCAATCAAGAAAATGGCTGAACCTGTGTCCACTGAAAACTA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACATCAATCAAGAAAATGGCTGAACCTGTGTCCACTGAAAACTA  449

seq1  GCCAGCATGCATGACAAGTCTTACTACCCTCTAAGCCATCTCTCTAATCC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATGCATGACAAGTCTTACTACCCTCTAAGCCATCTCTCTAATCC  499

seq1  ATAAACTACATCTTAAAAATCACAATAAACCAATAACCTATGCATATTTC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTACATCTTAAAAATCACAATAAACCAATAACCTATGCATATTTC  549

seq1  AAATGAGCATGATAAAATATGACCATGTTTTCAACAAAAAAGGAAGAAGA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCATGATAAAATATGACCATGTTTTCAACAAAAAAGGAAGAAGA  599

seq1  ATGTTTCGCAGCCCTCAGAAATGCAGTGAGCAGAGTCTGCAGTAGAGCCT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCGCAGCCCTCAGAAATGCAGTGAGCAGAGTCTGCAGTAGAGCCT  649

seq1  ACTGCAGCTGAAGCACACACGAGCACCCCAGTGTGCGTGCTCTCAGGGTA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTGAAGCACACACGAGCACCCCAGTGTGCGTGCTCTCAGGGTA  699

seq1  CGGTCACGTGCTGCTTAATGGCTAGGGTATACTTTTTAAAGAAATGCATC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACGTGCTGCTTAATGGCTAGGGTATACTTTTTAAAGAAATGCATC  749

seq1  GGCAGCTATTTCATCATTGTGCTGACATCATAGGGTGTGCTGGCTGGGCA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTATTTCATCATTGTGCTGACATCATAGGGTGTGCTGGCTGGGCA  799

seq1  GTTGGTTCTGACCTCACTATTAAGTGGGTGCCTGACCTTAAAGTGATGTG  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTCTGACCTCACTATTAAGTGGGTGCCTGACCTTAAAGTGATGTG  849

seq1  TGGGTTCTAGCCCAGCAGAGCTGTTTTAAAATCGAAAAGAATGTAGTACT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTAGCCCAGCAGAGCTGTTTTAAAATCGAAAAGAATGTAGTACT  899

seq1  TTGCACCTCATGATGTGGGTCTTTAAAACTTTCTTCTTTCAGGTCCCTTT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTCATGATGTGGGTCTTTAAAACTTTCTTCTTTCAGGTCCCTTT  949

seq1  TGCAAGATATGTGGCAAGAAATAACATACTGAATTTAAAACGGTAAGGTG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATATGTGGCAAGAAATAACATACTGAATTTAAAACGGTAAGGTG  999

seq1  TATTGTGCACCCTGCATTTGGTAGATGTGGGAATGAAATCAGACAAAGGT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCACCCTGCATTTGGTAGATGTGGGAATGAAATCAGACAAAGGT  1049

seq1  GGGTGGGAGGTTTTGTTTTTTTCTTCTGAAACTTTCATACAGGAAAGAAT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGGTTTTGTTTTTTTCTTCTGAAACTTTCATACAGGAAAGAAT  1099

seq1  TC  1074
      ||
seq2  TC  1101

seq1: chr2_118112531_118113010
seq2: B6Ng01-171J10.g_66_545

seq1  GAATTCTCTAAAGCACTCTGCATTAGTTTGGTGATAGTGACTCAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAGCACTCTGCATTAGTTTGGTGATAGTGACTCAAGAAAA  50

seq1  CATCAACAGTGATCACACACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACAGTGATCACACACACACACACACACACACACACACACACACAC  100

seq1  ACGGACTCCCACTTATTCAGGATAAGAGTTGTTTATACTGATGCCACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTCCCACTTATTCAGGATAAGAGTTGTTTATACTGATGCCACCAG  150

seq1  TCACCATGGTGATAAGCTGAACAATAATGATTTATGAGAATCCTCCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGGTGATAAGCTGAACAATAATGATTTATGAGAATCCTCCTGAT  200

seq1  TTGGAAGCCTTTCGTCACTGGTACACAGATTTGAGTCTAACCAAAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCCTTTCGTCACTGGTACACAGATTTGAGTCTAACCAAAGCATC  250

seq1  TTTCTTTACATAGTGTTACAGGCAAGACTTAAAAATATGCTCAGGATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACATAGTGTTACAGGCAAGACTTAAAAATATGCTCAGGATCTA  300

seq1  TTAATGTAATAGTCCACTGGAAGATATTGTCTATGAAGAGATGTACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAATAGTCCACTGGAAGATATTGTCTATGAAGAGATGTACACAT  350

seq1  TGCGGTATATTTGATTTTCACTGCTAGAAGAGTCTTTATCCCTTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTATATTTGATTTTCACTGCTAGAAGAGTCTTTATCCCTTAAAGAA  400

seq1  CTTCTCACAAATAAATTATTCCCTTTGTGAGAATCAAAATCCTGAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACAAATAAATTATTCCCTTTGTGAGAATCAAAATCCTGAGGATT  450

seq1  TTCATGTTGTTTTTTGAATGTGTGTGTGTG  480
      ||||||||||||||||||||||||||||||
seq2  TTCATGTTGTTTTTTGAATGTGTGTGTGTG  480