BAC Information

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BAC

Clone NameB6Ng01-171L02
Chromosome2 (Build37)
Map Location 95,001,216 - 95,213,420
singlet/doubletdoublet
Overlap genenone
Upstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171L02.bB6Ng01-171L02.g
ACCGA000505GA000506
length963775
definitionB6Ng01-171L02.b B6Ng01-171L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,212,473 - 95,213,420)(95,001,216 - 95,001,883)
sequence
gaattctattatgaagtcaggtgcccatgtcctcaagcatcttcctatgc
attgttggggtctgtaaattgctgaagaatgtaccccagactcaaatagt
atgcaaaagcaaagagaaatttatttctgcatgcaggggcccaattacat
taggatggaacgatcttgactgaattttcagactcagtcctaaagctaca
aagaacattagggagggataggtgatctatatcttgagtagtgggttcta
tctctgggatctaagtgacactatgattcacactaactattcttgcttca
tgctaagggaggttagctcttgacttcttggctgcaagtttggctagctg
tcttttcacaagctggggagggtcaccttttgacatatgcctgtggttgt
tcgagtaactgacttgaccagttctgagaagtagaaactcatgcctggtc
tcctaaactgctagtttgcagcctgtcatggagtcagcctggctcaggcc
aattcactcctttcagtatatagtttgtaaagtcttcactgaatttccaa
ggtaactttggggagctaagtagactgtgataagcaggagttgagtctac
atagcccttaagtatttagcagtggtctgagaattcccattagaaattaa
tatccagtacatcaatattgagggtggggcgtaatgggaagtgtataggt
agtaagttcagagctctagtgaatgaattcatgccactacgaaaagggct
ttgtgaggtgactttgtattcatgccactccatctttttgtcatgagagg
gcatggggagaagccatggccagatgctggtgatttttaactcaagcttc
cagaactttaaggtaaaagaatttattgttcccctatacatttacccagt
tgagatgcattgtaaaaaacagtacagaacatggtgtgaacttttcctta
ctcatatttccac

gaattcctaaatatgtgaatgtactggctgtttttgtgtgtcaacttgac
acaggctggagttatcacagagaaagttgcttcagtttgggaaatgcctc
catgatatccagctgtaaggcattttctcattagtgatcaaggggggggg
tccccttgtgggtggtgtcatctctgggctgatagtcttggttctataag
agagcacactgagcaagccagtaagtaacaccgctccatggcctctgcat
tagctcctgtttcctgacctgctttgagttccagtcctgaattcctttag
tgatgaacagcaatgtggaaatgtaagctgcttgttggtcatgttttgtc
caggaatagaaaccctgattaagacagtgaataagtgtgtcttttccttt
tgtttgttgtttttttttttcttttatgctgtgtttgggtttatcttatt
atacatttttccccaaggtgattgtttgttttctaagaagagacataatg
aaggctgctccagaggagaaggcaagtgaggacaaatgagagggatagag
ggaagtgaaatagtaatcaggatatattggataaaaaatgtatttcaata
aaagagaaaataaataaaaattaaccaaacttactttgtatcatactaat
caaaaaggaagcaagttaaaatagaggaacatgcattttatggaatattt
tctagaggctgtatcagtgtgtgagcacagtgtgcataagtacctgtttt
gtgtgtgtgtgtggtatatgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95212473_95213420
seq2: B6Ng01-171L02.b_41_1003 (reverse)

seq1  GTGAAAATA-GAGT-AGGAAAAG-TCACACCATGTTCTGTACTG-TTTTT  46
      ||| ||||| |||| |||||||| |||||||||||||||||||| |||||
seq2  GTGGAAATATGAGTAAGGAAAAGTTCACACCATGTTCTGTACTGTTTTTT  50

seq1  ACAATGCA-CTC-ACTGGGT-AATGTATAGGG--ACAATAAATTCTTTTA  91
      |||||||| ||| ||||||| |||||||||||  ||||||||||||||||
seq2  ACAATGCATCTCAACTGGGTAAATGTATAGGGGAACAATAAATTCTTTTA  100

seq1  -CTTAA--GTCTGG-AGCTTGAGTT-AAAATCACCAGCATCTGGCCATGG  136
       |||||   ||||| |||||||||| ||||||||||||||||||||||||
seq2  CCTTAAAGTTCTGGAAGCTTGAGTTAAAAATCACCAGCATCTGGCCATGG  150

seq1  CTTCTCCCCATGCCCTCTCATGAC-AAAAGATGGAGTGGCATGAATACAA  185
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTCTCCCCATGCCCTCTCATGACAAAAAGATGGAGTGGCATGAATACAA  200

seq1  AGTCACCTCACAAAGCCCTTTTCGTAGTGGCATGAATTCATTCACTAGAG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTCACAAAGCCCTTTTCGTAGTGGCATGAATTCATTCACTAGAG  250

seq1  CTCTGAACTTACTACCTATACACTTCCCATTACGCCCCACCCTCAATATT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTTACTACCTATACACTTCCCATTACGCCCCACCCTCAATATT  300

seq1  GATGTACTGGATATTAATTTCTAATGGGAATTCTCAGACCACTGCTAAAT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTGGATATTAATTTCTAATGGGAATTCTCAGACCACTGCTAAAT  350

seq1  ACTTAAGGGCTATGTAGACTCAACTCCTGCTTATCACAGTCTACTTAGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGGCTATGTAGACTCAACTCCTGCTTATCACAGTCTACTTAGCT  400

seq1  CCCCAAAGTTACCTTGGAAATTCAGTGAAGACTTTACAAACTATATACTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTTACCTTGGAAATTCAGTGAAGACTTTACAAACTATATACTG  450

seq1  AAAGGAGTGAATTGGCCTGAGCCAGGCTGACTCCATGACAGGCTGCAAAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTGAATTGGCCTGAGCCAGGCTGACTCCATGACAGGCTGCAAAC  500

seq1  TAGCAGTTTAGGAGACCAGGCATGAGTTTCTACTTCTCAGAACTGGTCAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTTAGGAGACCAGGCATGAGTTTCTACTTCTCAGAACTGGTCAA  550

seq1  GTCAGTTACTCGAACAACCACAGGCATATGTCAAAAGGTGACCCTCCCCA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTACTCGAACAACCACAGGCATATGTCAAAAGGTGACCCTCCCCA  600

seq1  GCTTGTGAAAAGACAGCTAGCCAAACTTGCAGCCAAGAAGTCAAGAGCTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAAAAGACAGCTAGCCAAACTTGCAGCCAAGAAGTCAAGAGCTA  650

seq1  ACCTCCCTTAGCATGAAGCAAGAATAGTTAGTGTGAATCATAGTGTCACT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTTAGCATGAAGCAAGAATAGTTAGTGTGAATCATAGTGTCACT  700

seq1  TAGATCCCAGAGATAGAACCCACTACTCAAGATATAGATCACCTATCCCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCAGAGATAGAACCCACTACTCAAGATATAGATCACCTATCCCT  750

seq1  CCCTAATGTTCTTTGTAGCTTTAGGACTGAGTCTGAAAATTCAGTCAAGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGTTCTTTGTAGCTTTAGGACTGAGTCTGAAAATTCAGTCAAGA  800

seq1  TCGTTCCATCCTAATGTAATTGGGCCCCTGCATGCAGAAATAAATTTCTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCATCCTAATGTAATTGGGCCCCTGCATGCAGAAATAAATTTCTC  850

seq1  TTTGCTTTTGCATACTATTTGAGTCTGGGGTACATTCTTCAGCAATTTAC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGCATACTATTTGAGTCTGGGGTACATTCTTCAGCAATTTAC  900

seq1  AGACCCCAACAATGCATAGGAAGATGCTTGAGGACATGGGCACCTGACTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAACAATGCATAGGAAGATGCTTGAGGACATGGGCACCTGACTT  950

seq1  CATAATAGAATTC  948
      |||||||||||||
seq2  CATAATAGAATTC  963


seq1: chr2_95001216_95001883
seq2: B6Ng01-171L02.g_170_840

seq1  ATATCCAGCTGTAAGGCATTTTCTCATTAGTGATCAAGGGGGGGGGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGCTGTAAGGCATTTTCTCATTAGTGATCAAGGGGGGGGGTCCC  50

seq1  CTTGTGGGTGGTGTCATCTCTGGGCTGATAGTCTTGGTTCTATAAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGTGGTGTCATCTCTGGGCTGATAGTCTTGGTTCTATAAGAGAG  100

seq1  CACACTGAGCAAGCCAGTAAGTAACACCGCTCCATGGCCTCTGCATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAGCAAGCCAGTAAGTAACACCGCTCCATGGCCTCTGCATTAGC  150

seq1  TCCTGTTTCCTGACCTGCTTTGAGTTCCAGTCCTGAATTCCTTTAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCCTGACCTGCTTTGAGTTCCAGTCCTGAATTCCTTTAGTGAT  200

seq1  GAACAGCAATGTGGAAATGTAAGCTGCTTGTTGGTCATGTTTTGTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAATGTGGAAATGTAAGCTGCTTGTTGGTCATGTTTTGTCCAGG  250

seq1  AATAGAAACCCTGATTAAGACAGTGAATAAGTGTGTCTTTTCCTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACCCTGATTAAGACAGTGAATAAGTGTGTCTTTTCCTTTTGTT  300

seq1  TGTTGTTTTTTTTTTTCTTTTATGCTGTGTTTGGGTTTATCTTATTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTTTTTTTCTTTTATGCTGTGTTTGGGTTTATCTTATTATAC  350

seq1  ATTTTTCCCCAAGGTGATTGTTTGTTTTCTAAGAAGAGACATAATGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCCAAGGTGATTGTTTGTTTTCTAAGAAGAGACATAATGAAGG  400

seq1  CTGCTCCAGAGGAGAAGGCAAGTGAGGACAAATGAGAGGGATAGAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGAGGAGAAGGCAAGTGAGGACAAATGAGAGGGATAGAGGGAA  450

seq1  GTGAAATAGTAATCAGGATATATTGGATAAAAAATGTATTTCAATAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAGTAATCAGGATATATTGGATAAAAAATGTATTTCAATAAAAG  500

seq1  AGAAAATAAATAAAAATTAACCAAACTTACTTTGTATCATACTAATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAATAAAAATTAACCAAACTTACTTTGTATCATACTAATCAAA  550

seq1  AAGGAAGCAAGTT-AAATAGAGGAACATGCATTTTATGGAATA-TTTCTA  598
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AAGGAAGCAAGTTAAAATAGAGGAACATGCATTTTATGGAATATTTTCTA  600

seq1  GAGGCTGTATCAGTGTGTGAGCACAGTGTGCATAAGTACCTG-TTTGTGT  647
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGCTGTATCAGTGTGTGAGCACAGTGTGCATAAGTACCTGTTTTGTGT  650

seq1  GTGTGTGTGGTATATGTTTTG  668
      |||||||||||||||||||||
seq2  GTGTGTGTGGTATATGTTTTG  671


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