BAC Information

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BAC

Clone NameB6Ng01-172A03
Chromosome2 (Build37)
Map Location 164,959,211 - 165,087,168
singlet/doubletdoublet
Overlap geneCdh22
Upstream geneStk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172A03.bB6Ng01-172A03.g
ACCGA000741GA000742
length1,115203
definitionB6Ng01-172A03.b B6Ng01-172A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,086,060 - 165,087,168)(164,959,211 - 164,959,413)
sequence
gaattccttttatgtggcaggtctgaaaggagctctaaaggtcattgtct
gggggcactcaaaccacccttgtgccttgtctcgactaacatggagggat
gactcgatgacaatagtcctaccatttcccctcatgagccgcctcatcaa
ccggcccagaaagagagggtggagaacccatctagtgttagcatgaggtc
agggatggagagagatctgtgttcaaatctcagctctgtggttaatgcct
gtgtgtctctggccgaactaccgcacctctcggagccccactgggctcat
ttcattaaacaaggataatgcttgaacttctaatctcccagctgccctct
gtcctcacagcctggacattcttcctgtactgttgcaagcattacgggcc
aggaatgatgtgagcagagtcctccagacagggtctgacccctcataagc
gttcagtcagtggtggctctaagtgcgttgtttattccagccgcagccct
gttccgagagtcaaggatgcaggtagggaggatcacctggctctttgctc
atccttaaaaaacgccagccccgcaggcagccttggcttgctgccctcca
ccagctgagctggtgaccgggacctgcagaagcaatattctccaagcttg
cagggctggagaccactggacagacagacagatcctgagctgcctttgaa
gaaagcaacagtgagcagtaggcccagggctgcccttggcctggaggatt
caggtctaatttgcccagggtggagagggagacccaggattgcttttagg
taacagactggcagtggttagctttgaggtgacagaccggcagtggctag
ccctgtgctcaccctgcgctgttgacaggattttctgctcctgagctgag
cccactccttatgccacatgatccagcacaaaggtcccaactgaaggacc
agcatcctaatataccgaggaggagctgtgtggatccagctgtcctcaca
cctgggcctttgggaaaggtagatgaagaaggatagccctttgcttccca
gacttcatgtgaatgtcatggaacccaattttacaaaggcacacccttat
ggccctctgggttgt
aaaggctcgcagacgccgcgctgagggctgagccggctttgtgttttcct
ttaaaccgcagttgaaagagactaagggaacttcagccgagggacttcct
cggccctgccacgggccagcagggcctccgaagtgggaggaggaagagaa
agcgggcacagggaggagggggaggccagcaggagggcttggggggggag
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165086060_165087168
seq2: B6Ng01-172A03.b_46_1160 (reverse)

seq1  ACAACCCAGAGG--CATAA-GGTGTGGCTTTGTAAAA-TGGGTTCC-TGA  45
      ||||||||||||  ||||| |||||| |||||||||| |||||||| |||
seq2  ACAACCCAGAGGGCCATAAGGGTGTGCCTTTGTAAAATTGGGTTCCATGA  50

seq1  CA-TCACATG-AGTCTGGGAAGCAAGGGGCTTTCC-TCTTCATCTAACTT  92
      || ||||||| |||||||||||||| ||||| ||| |||||||||| |||
seq2  CATTCACATGAAGTCTGGGAAGCAAAGGGCTATCCTTCTTCATCTACCTT  100

seq1  TCCAAAAGGCCCAGGTGTGAGGACAGCTGGATCCACACAGCTCCTCCTCG  142
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGCCCAGGTGTGAGGACAGCTGGATCCACACAGCTCCTCCTCG  150

seq1  GTATATTAGGATGCTGGTCCTTCAGTTGGGACCTTTGTGCTGGGATCATG  192
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GTATATTAGGATGCTGGTCCTTCAGTTGGGACCTTTGTGCT-GGATCAT-  198

seq1  GTGGCATAAGGAGTGGGCTCAGCTCAGGAGCAGAAAATCCTGTCAACAGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAAGGAGTGGGCTCAGCTCAGGAGCAGAAAATCCTGTCAACAGC  248

seq1  GCAGGGTGAGCACAGGGCTAGCCACTGCCGGTCTGTCACCTCAAAGCTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGAGCACAGGGCTAGCCACTGCCGGTCTGTCACCTCAAAGCTAA  298

seq1  CCACTGCCAGTCTGTTACCTAAAAGCAATCCTGGGTCTCCCTCTCCACCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCAGTCTGTTACCTAAAAGCAATCCTGGGTCTCCCTCTCCACCC  348

seq1  TGGGCAAATTAGACCTGAATCCTCCAGGCCAAGGGCAGCCCTGGGCCTAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAATTAGACCTGAATCCTCCAGGCCAAGGGCAGCCCTGGGCCTAC  398

seq1  TGCTCACTGTTGCTTTCTTCAAAGGCAGCTCAGGATCTGTCTGTCTGTCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGTTGCTTTCTTCAAAGGCAGCTCAGGATCTGTCTGTCTGTCC  448

seq1  AGTGGTCTCCAGCCCTGCAAGCTTGGAGAATATTGCTTCTGCAGGTCCCG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCCAGCCCTGCAAGCTTGGAGAATATTGCTTCTGCAGGTCCCG  498

seq1  GTCACCAGCTCAGCTGGTGGAGGGCAGCAAGCCAAGGCTGCCTGCGGGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGCTCAGCTGGTGGAGGGCAGCAAGCCAAGGCTGCCTGCGGGGC  548

seq1  TGGCGTTTTTTAAGGATGAGCAAAGAGCCAGGTGATCCTCCCTACCTGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTTTTTAAGGATGAGCAAAGAGCCAGGTGATCCTCCCTACCTGCA  598

seq1  TCCTTGACTCTCGGAACAGGGCTGCGGCTGGAATAAACAACGCACTTAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACTCTCGGAACAGGGCTGCGGCTGGAATAAACAACGCACTTAGA  648

seq1  GCCACCACTGACTGAACGCTTATGAGGGGTCAGACCCTGTCTGGAGGACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTGACTGAACGCTTATGAGGGGTCAGACCCTGTCTGGAGGACT  698

seq1  CTGCTCACATCATTCCTGGCCCGTAATGCTTGCAACAGTACAGGAAGAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACATCATTCCTGGCCCGTAATGCTTGCAACAGTACAGGAAGAAT  748

seq1  GTCCAGGCTGTGAGGACAGAGGGCAGCTGGGAGATTAGAAGTTCAAGCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCTGTGAGGACAGAGGGCAGCTGGGAGATTAGAAGTTCAAGCAT  798

seq1  TATCCTTGTTTAATGAAATGAGCCCAGTGGGGCTCCGAGAGGTGCGGTAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGTTTAATGAAATGAGCCCAGTGGGGCTCCGAGAGGTGCGGTAG  848

seq1  TTCGGCCAGAGACACACAGGCATTAACCACAGAGCTGAGATTTGAACACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCCAGAGACACACAGGCATTAACCACAGAGCTGAGATTTGAACACA  898

seq1  GATCTCTCTCCATCCCTGACCTCATGCTAACACTAGATGGGTTCTCCACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCTCCATCCCTGACCTCATGCTAACACTAGATGGGTTCTCCACC  948

seq1  CTCTCTTTCTGGGCCGGTTGATGAGGCGGCTCATGAGGGGAAATGGTAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTGGGCCGGTTGATGAGGCGGCTCATGAGGGGAAATGGTAGG  998

seq1  ACTATTGTCATCGAGTCATCCCTCCATGTTAGTCGAGACAAGGCACAAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTCATCGAGTCATCCCTCCATGTTAGTCGAGACAAGGCACAAGG  1048

seq1  GTGGTTTGAGTGCCCCCAGACAATGACCTTTAGAGCTCCTTTCAGACCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAGTGCCCCCAGACAATGACCTTTAGAGCTCCTTTCAGACCTG  1098

seq1  CCACATAAAAGGAATTC  1109
      |||||||||||||||||
seq2  CCACATAAAAGGAATTC  1115

seq1: chr2_164959211_164959413
seq2: B6Ng01-172A03.g_74_276

seq1  AAAGGCTCGCAGACGCCGCGCTGAGGGCTGAGCCGGCTTTGTGTTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCGCAGACGCCGCGCTGAGGGCTGAGCCGGCTTTGTGTTTTCCT  50

seq1  TTAAACCGCAGTTGAAAGAGACTAAGGGAACTTCAGCCGAGGGACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCGCAGTTGAAAGAGACTAAGGGAACTTCAGCCGAGGGACTTCCT  100

seq1  CGGCCCTGCCACGGGCCAGCAGGGCCTCCGAAGTGGGAGGAGGAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCTGCCACGGGCCAGCAGGGCCTCCGAAGTGGGAGGAGGAAGAGAA  150

seq1  AGCGGGCACAGGGAGGAGGGGGAGGCCAGCAGGAGGGCTTGGGGGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGCACAGGGAGGAGGGGGAGGCCAGCAGGAGGGCTTGGGGGGGGAG  200

seq1  GGC  203
      |||
seq2  GGC  203