BAC Information

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BAC

Clone NameB6Ng01-172H08
Chromosome2 (Build37)
Map Location 159,354,558 - 159,565,839
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb, LOC100043892, Top1, Plcg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172H08.bB6Ng01-172H08.g
ACCGA001067GA001068
length1,018230
definitionB6Ng01-172H08.b B6Ng01-172H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,564,843 - 159,565,839)(159,354,558 - 159,354,787)
sequence
gaattcaaaaattctacctgggaagttactgctgtgtttcctgctctgga
tcagtcactcaagcccgtttgcttcactgaattttctgttcttttccaac
atattcaccatttgtagtctttaaattgcatgctgatctgagttcctccc
tatcactagttctgaacccactaggcatttccttagtacatacttacaaa
tgaacataaacattccaaagataggaaatgacttctgtaacaaacatttg
taacagaaattgagggccagtgagatgactcactgggtaaagatgcctgc
caaccatgtctgatgacctgagttctatccccaggccccacatggtgaaa
aaccagatcccacaagatgtcctttgacattgataggcatcctcccaaaa
taaatgcataaatgtagtaagaaaaattcaagaaaattagttgcataaaa
aaacaaaacaaaacaaaacaagagaaagcaagaggtatcaatagatgtag
tctgtttcaaaataaaaataaatccccatagagggttcagtaaggaaaaa
cacttgcccaatagtgctaccttatcaccttagcacctcactagtaagag
gagagatggaaacaggatgatatcattagtacaaaaggcagataccctgg
caagaacatcagtgaacaagagactgtctcaaacaaagtggaaggcatgg
actaatgcccaaagctttcatcttgtcttcacacatgtgccatggcatac
acacacaggtgcacacacacacacacacacacacacacacacacacacac
acacacacatttttcacacacccacacacatgtgcacacacacagttttt
gaaatcgacagggacagagttcatgacaaaataaaatactccctggtctg
tagggattggatttccagggtgaaagttttcctgaaaaaggagacttaac
ttagaaaaacaaattcacgtgaaacagttccaggtggggcagttctgggt
ggggccccttgaaacatg
agtggaggacacacttcacaagaaaatcttattccttatagcaagaagaa
agcaacattctagagtgtgttagggtctcagattttttccaaagtacaga
aaatgcagatgaattccagaagccatggaggtttctactattttacctac
attgactcttccttcctgtgtgttatcagttgccaggttgatttgtggct
ggattgatgtcctcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159564843_159565839
seq2: B6Ng01-172H08.b_34_1042 (reverse)

seq1  AGGGGCCCCA-CCAGAACTG-CCCACCT-GAACTG-TTCACCTGAA-TTG  45
      |||||||||| ||||||||| ||||||| |||||| ||||| |||| |||
seq2  AGGGGCCCCACCCAGAACTGCCCCACCTGGAACTGTTTCACGTGAATTTG  50

seq1  TTTTTCTAAGTTAAGTCTCC-TTTTCA-GAAAAC-TTCA-CCTGGAAATC  91
      |||||||||||||||||||| |||||| |||||| |||| ||||||||||
seq2  TTTTTCTAAGTTAAGTCTCCTTTTTCAGGAAAACTTTCACCCTGGAAATC  100

seq1  CAATCCCTACAGACCA-GGAGTATTTTATTTTGTCATGAACTCTGT-CCT  139
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CAATCCCTACAGACCAGGGAGTATTTTATTTTGTCATGAACTCTGTCCCT  150

seq1  GTCGATTTCAAAAACTGTGTGTGTGCACATGTGTGTGGGTGTGTG-AAAA  188
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCGATTTCAAAAACTGTGTGTGTGCACATGTGTGTGGGTGTGTGAAAAA  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCA  250

seq1  CCTGTGTGTGTATGCCATGGCACATGTGTGAAGACAAGATGAAAGCTTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTGTATGCCATGGCACATGTGTGAAGACAAGATGAAAGCTTTG  300

seq1  GGCATTAGTCCATGCCTTCCACTTTGTTTGAGACAGTCTCTTGTTCACTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGTCCATGCCTTCCACTTTGTTTGAGACAGTCTCTTGTTCACTG  350

seq1  ATGTTCTTGCCAGGGTATCTGCCTTTTGTACTAATGATATCATCCTGTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGCCAGGGTATCTGCCTTTTGTACTAATGATATCATCCTGTTT  400

seq1  CCATCTCTCCTCTTACTAGTGAGGTGCTAAGGTGATAAGGTAGCACTATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCTCTTACTAGTGAGGTGCTAAGGTGATAAGGTAGCACTATT  450

seq1  GGGCAAGTGTTTTTCCTTACTGAACCCTCTATGGGGATTTATTTTTATTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGTTTTTCCTTACTGAACCCTCTATGGGGATTTATTTTTATTT  500

seq1  TGAAACAGACTACATCTATTGATACCTCTTGCTTTCTCTTGTTTTGTTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGACTACATCTATTGATACCTCTTGCTTTCTCTTGTTTTGTTTT  550

seq1  GTTTTGTTTTTTTATGCAACTAATTTTCTTGAATTTTTCTTACTACATTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTATGCAACTAATTTTCTTGAATTTTTCTTACTACATTT  600

seq1  ATGCATTTATTTTGGGAGGATGCCTATCAATGTCAAAGGACATCTTGTGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTATTTTGGGAGGATGCCTATCAATGTCAAAGGACATCTTGTGG  650

seq1  GATCTGGTTTTTCACCATGTGGGGCCTGGGGATAGAACTCAGGTCATCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGTTTTTCACCATGTGGGGCCTGGGGATAGAACTCAGGTCATCAG  700

seq1  ACATGGTTGGCAGGCATCTTTACCCAGTGAGTCATCTCACTGGCCCTCAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTGGCAGGCATCTTTACCCAGTGAGTCATCTCACTGGCCCTCAA  750

seq1  TTTCTGTTACAAATGTTTGTTACAGAAGTCATTTCCTATCTTTGGAATGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTACAAATGTTTGTTACAGAAGTCATTTCCTATCTTTGGAATGT  800

seq1  TTATGTTCATTTGTAAGTATGTACTAAGGAAATGCCTAGTGGGTTCAGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCATTTGTAAGTATGTACTAAGGAAATGCCTAGTGGGTTCAGAA  850

seq1  CTAGTGATAGGGAGGAACTCAGATCAGCATGCAATTTAAAGACTACAAAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATAGGGAGGAACTCAGATCAGCATGCAATTTAAAGACTACAAAT  900

seq1  GGTGAATATGTTGGAAAAGAACAGAAAATTCAGTGAAGCAAACGGGCTTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATATGTTGGAAAAGAACAGAAAATTCAGTGAAGCAAACGGGCTTG  950

seq1  AGTGACTGATCCAGAGCAGGAAACACAGCAGTAACTTCCCAGGTAGAATT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGATCCAGAGCAGGAAACACAGCAGTAACTTCCCAGGTAGAATT  1000

seq1  TTTGAATTC  997
      |||||||||
seq2  TTTGAATTC  1009

seq1: chr2_159354558_159354787
seq2: B6Ng01-172H08.g_72_301

seq1  AGTGGAGGACACACTTCACAAGAAAATCTTATTCCTTATAGCAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGACACACTTCACAAGAAAATCTTATTCCTTATAGCAAGAAGAA  50

seq1  AGCAACATTCTAGAGTGTGTTAGGGTCTCAGATTTTTTCCAAAGTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATTCTAGAGTGTGTTAGGGTCTCAGATTTTTTCCAAAGTACAGA  100

seq1  AAATGCAGATGAATTCCAGAAGCCATGGAGGTTTCTACTATTTTACCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGATGAATTCCAGAAGCCATGGAGGTTTCTACTATTTTACCTAC  150

seq1  ATTGACTCTTCCTTCCTGTGTGTTATCAGTTGCCAGGTTGATTTGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCTTCCTTCCTGTGTGTTATCAGTTGCCAGGTTGATTTGTGGCT  200

seq1  GGATTGATGTCCTCCTCCTCCTCCTCCTCC  230
      ||||||||||||||||||||||||||||||
seq2  GGATTGATGTCCTCCTCCTCCTCCTCCTCC  230