BAC Information

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BAC

Clone NameB6Ng01-173L18
Chromosome14 (Build37)2 (Build37)
Map Location 110,260,576 - 110,260,775139,159,345 - 139,160,473
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6, EG668772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173L18.bB6Ng01-173L18.g
ACCGA002003GA002004
length6711,122
definitionB6Ng01-173L18.b B6Ng01-173L18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,260,576 - 110,260,775)(139,159,345 - 139,160,473)
sequence
gaattcagatgatttgatttcttttgtttcttcctccgattctaagatac
tgtatttgggggcataccccaaacatcctggttgccaaactagaccaaat
gtggagtggtatttgacagaagcacacatccattggagcctgaaaaagaa
attgctatttttctttgagtttgactactgttctcctgtcctgtgtttat
taagatttggttctttgactcaagaagaacgaagaccaaagtgtggacac
tttgccccttcttagaattgggaacaaaacacccatggaaggagttacag
agacaaagtttggagctgagatgaaaggatggaccatctagagactgcca
tatccagggatccatcccataatcagcctccaaatgctgacaccattgca
tacattagcaagattttgctgaaaggacccttatatagctgtctcttgtg
agactatgccagggcctagcaaacacagaagtggatgctcacagtcagct
attggatgcatcacagggctcccaatggaggagctagagaaaatacccaa
ggagctaaagggatctgcaactctataggtggaacaacattatgaactaa
ccagtaccccggagctcttgactctagctgcatatgtatcaaaagatggc
ctagctggccatcactggaaa

gaattcactcttcacaaacctaaagaatatacagaagaatgaatgtcaca
tgaaattcaggatggacttactagaagcttggcccactccagtgtggtca
acgcagtatcaccaaactgagaaacgtattttttataactataagggctt
gtagatgtaaaatgaagaaaaggggtaagcaagtcaggatgttgaaatcc
atataaaatgagaaaagctaggttttagcacttgatgcctggttactcct
ctcatgcctgagagtgtttcccaaaaccttagtcattacacagtttcatt
caaaacgttctcaccacccacttgttttttttttaattccgacaagtaga
aagactaaaaactatcaaagaaaaaatattgatacaggcttatgtagctt
actctattttgaggttgcttcagggagaaatctctagagtttcatcttga
ggacccaatgattagaaaataccccagtgataaaaattaaagtaattcat
tcatggccccgatgtaaattaagagatgtagacagaaaagaaagagatga
ataagaaagttttgtcaaggttatttgagttttatggaagatgtttctgc
tgtaggtaggactggttttaatctaacttgaaaaaaaaaaagccttagat
ttcaaaaatgaagccaagcaaatgattagtcagtcattttgtgtaaatgc
tttagcttgtgatgttactgtggaaagtaaagtagaataaaacagattta
gtacagctccagtaagcacggtctgtggccagcacattaaatcctgaatt
acaagctcccccaacgcctttcctaatgagccatccaagtctctgatgta
tataattatgcctttttttaaaaatgcatgaatacatattccactcagag
atttagatggctcctttggggtatttaagtttcaattgagtccatcagtc
ttcttgtgtatgacgttcttgtgaatgcttaaaatgaaattcagaaatta
gagcttcaaaataaccttaaagggaccatgtatcagaaattgcatgcaca
cacggacagaacacgtttcaaagaaagttgatgagcacttgcctcctgga
ttcagtctttttcagttggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110260576_110260775
seq2: B6Ng01-173L18.b_517_716

seq1  AACATAGAAGTGGATGCTCACAGTCGGCTATTGGATGGATCACATGGCCC  50
      |||| |||||||||||||||||||| ||||||||||| |||||| ||| |
seq2  AACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGCATCACAGGGCTC  50

seq1  CCAATGAAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAAC  100
      |||||| |||||||||||||| |||| ||| |||||||||||||||||||
seq2  CCAATGGAGGAGCTAGAGAAAATACCCAAGGAGCTAAAGGGATCTGCAAC  100

seq1  CCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGA  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGA  150

seq1  CTCTAGCTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTCGAAA  200
      ||||||||||||||| |||||||||||||||||  |||||||||| ||||
seq2  CTCTAGCTGCATATGTATCAAAAGATGGCCTAGCTGGCCATCACTGGAAA  200


seq1: chr2_139159345_139160473
seq2: B6Ng01-173L18.g_66_1187

seq1  GAATTCACTCTTCACAAACCTAAAGAATATACAGAAGAATGAATGTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTCACAAACCTAAAGAATATACAGAAGAATGAATGTCACA  50

seq1  TGAAATTCAGGATGGACTTACTAGAAGCTTGGCCCACTCCAGTGTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCAGGATGGACTTACTAGAAGCTTGGCCCACTCCAGTGTGGTCA  100

seq1  ACGCAGTATCACCAAACTGAGAAACGTATTTTTTATAACTATAAGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGTATCACCAAACTGAGAAACGTATTTTTTATAACTATAAGGGCTT  150

seq1  GTAGATGTAAAATGAAGAAAAGGGGTAAGCAAGTCAGGATGTTGAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTAAAATGAAGAAAAGGGGTAAGCAAGTCAGGATGTTGAAATCC  200

seq1  ATATAAAATGAGAAAAGCTAGGTTTTAGCACTTGATGCCTGGTTACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATGAGAAAAGCTAGGTTTTAGCACTTGATGCCTGGTTACTCCT  250

seq1  CTCATGCCTGAGAGTGTTTCCCAAAACCTTAGTCATTACACAGTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTGAGAGTGTTTCCCAAAACCTTAGTCATTACACAGTTTCATT  300

seq1  CAAAACGTTCTCACCACCCACTTGTTTTTTTTTTAATTCCGACAAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTTCTCACCACCCACTTGTTTTTTTTTTAATTCCGACAAGTAGA  350

seq1  AAGACTAAAAACTATCAAAGAAAAAATATTGATACAGGCTTATGTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAAAACTATCAAAGAAAAAATATTGATACAGGCTTATGTAGCTT  400

seq1  ACTCTATTTTGAGGTTGCTTCAGGGAGAAATCTCTAGAGTTTCATCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTTTGAGGTTGCTTCAGGGAGAAATCTCTAGAGTTTCATCTTGA  450

seq1  GGACCCAATGATTAGAAAATACCCCAGTGATAAAAATTAAAGTAATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAATGATTAGAAAATACCCCAGTGATAAAAATTAAAGTAATTCAT  500

seq1  TCATGGCCCCGATGTAAATTAAGAGATGTAGACAGAAAAGAAAGAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCCGATGTAAATTAAGAGATGTAGACAGAAAAGAAAGAGATGA  550

seq1  ATAAGAAAGTTTTGTCAAGGTTATTTGAGTTTTATGGAAGATGTTTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGTTTTGTCAAGGTTATTTGAGTTTTATGGAAGATGTTTCTGC  600

seq1  TGTAGGTAGGACTGGTTTTAATCTAACTTGAAAAAAAAAAAGCCTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAGGACTGGTTTTAATCTAACTTGAAAAAAAAAAAGCCTTAGAT  650

seq1  TTCAAAAATGAAGCCAAGCAAATGATTAGTCAGTCATTTTGTGTAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATGAAGCCAAGCAAATGATTAGTCAGTCATTTTGTGTAAATGC  700

seq1  TTTAGCTTGTGATGTTACTGTGGAAAGTAAAGTAGAATAAAACAGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTGTGATGTTACTGTGGAAAGTAAAGTAGAATAAAACAGATTTA  750

seq1  GTACAGCTCCAGTAAGCACGGTCTGTGGCCAGCACATTAAATCCTGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTCCAGTAAGCACGGTCTGTGGCCAGCACATTAAATCCTGAATT  800

seq1  ACAAGCTCCCCCAACGCC-TTCCTAATGAGCCATCCAAGTCTCTGATGTA  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAGCTCCCCCAACGCCTTTCCTAATGAGCCATCCAAGTCTCTGATGTA  850

seq1  TATAA-TATGCC-TTTTTTAAAAATGCATGAATACATATTCCACTCAGAG  897
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TATAATTATGCCTTTTTTTAAAAATGCATGAATACATATTCCACTCAGAG  900

seq1  ATTTAGATGGCTCCTTTGGGTTATTTAAGTTTCAAATGAGTCCATCAGTC  947
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATTTAGATGGCTCCTTTGGGGTATTTAAGTTTCAATTGAGTCCATCAGTC  950

seq1  -TCCTGTGTATGACGTTC-TGTGAATGCCTTAAAAATGAAAATTCAGAAA  995
       || |||||||||||||| |||||||||  | |||||| |||||||||||
seq2  TTCTTGTGTATGACGTTCTTGTGAATGC--TTAAAATG-AAATTCAGAAA  997

seq1  TTAGAAGCTCAAAAT-ACCTTAAAGGGGAACAATGTATCAGGAAATGCAT  1044
      |||||   ||||||| |||||||||||  || ||||||||| || |||||
seq2  TTAGAGCTTCAAAATAACCTTAAAGGG--ACCATGTATCAGAAATTGCAT  1045

seq1  GCACACACAGACAGGAACACGTTCAAAGGAAAGTTGATGAGGCATCTGCC  1094
      |||||||| |||| |||||||||  || |||||||||||| |||  ||||
seq2  GCACACACGGACA-GAACACGTTTCAAAGAAAGTTGATGA-GCACTTGCC  1093

seq1  TCCCTGAATTTCCTGTCTTTTTTCAGTTTGGGTCA  1129
      | |||| |||  | ||| ||||||||||  |||||
seq2  T-CCTGGATT--CAGTC-TTTTTCAGTT--GGTCA  1122


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