BAC Information

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BAC

Clone NameB6Ng01-173M05
Chromosome2 (Build37)
Map Location 152,598,230 - 152,712,887
singlet/doubletdoublet
Overlap geneBcl2l1, Tpx2
Upstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2
Downstream geneMylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173M05.bB6Ng01-173M05.g
ACCGA002025GA002026
length1,1371,155
definitionB6Ng01-173M05.b B6Ng01-173M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,598,230 - 152,599,386)(152,711,724 - 152,712,887)
sequence
gaattccataatcccccttgaggccacaccccaaagatctagggacatct
gataaatcctgcctcattgtcttagtcagggtttctattcctgcacaaac
gtcatgaccaagaagcaagttggggaggaaaaggtttattcagcttacac
ttcccacattgctgttcatcactgaaggaagtcaggactggaactcaagc
aggtcaggaagcaggagctgatgcagaggccatggagggatgtcctttac
tggcttgcctcccctggcttgctcagcttgctctcttatagaaccaagac
taccagcccagagatggtcccacccacaaggggcctttcccccttgatca
ctaattgagaaaatgccttacagttggatctcatggaggcatttcttcaa
ctgaagctcctttctcttaccacttagcctgctttggggagatacacatt
aaggtagagataggttaccctgacaattctgatgtagtggtaacttgcca
ggagaattcttgagcattttataagcattacatgggataccaccaccatg
gtgggtgtgaccctggtgtaaccactttggttgtcactgtcctggggatg
aacccagggccttgcacatgctagaaagaactctatcgagttctatctcc
acctccacaaatttgtaaacctcttgcttcattctcccaagtgctggggt
tacagaatatactaccatgccagatgccccaccccctacttatcaggtaa
agaaagcctggcacttagagtgacttacttaccccaggccgtctgttgca
gtcttgctcccaaatactatactgttctctgtccttgggcttagctgctc
tgctccacctatgaggtgagcatagccggaggtgggaaacccatctctta
tggccatgccttcagtggttagctgtgcagcgtgcccatcagtgaagacc
actatcagtgagaccactcgttctttatagtttgtcttgagtgcctggca
caaagtctagggtaaagtgacctcctgcttagcacagagatgactcattg
ttagagcactgactgttcttacgagactcagttcaaaccatgccatatac
ttcaaatcatctctatccagtccagggatctcaaccc
gaattctgggcagcctggtctatacaaagagttccaggacagccaaagct
acacacacacacacacacacacacacacacacacacacacacacacacaa
agaaatgaagaaaggaaggatgggagggaggagagaagaaaagaaaaaga
aaaagaatatatctattgtctgttttattcattccttctctagaaactaa
aaatgaattgaaattagtgaaaccgatgaaagctacaggtagctcatgac
agtgacctcagacatcaacatgacttatgggaacaatgagatgtggggtg
gaaccatgcagtggttaaagaggtgacagactcatagcccagttcccttt
attagataccctggtggtagagtcccttgtttttaaaacagaaattaaga
acagagacttttacagttgttatgagaaataaaataatctatgtaaaact
caggacaaggcaggcatggctgtgcacgcctttaatcccagcacacggga
ggagtggcagggatctctgagcacgaggccaaccagggctacatagggag
agcctgtctcaaaacaaagcccccaaacaccctagtacaacacacacact
caaaggtatatagaaagtattactattatcagcacaactgcttactgtgt
cagtaatcctaagctcttcactctctctgtcttcaactcaacaaatcaaa
atgccgagactgggaatctatgtaagagcccagaggattctgaaaagcag
ctgatcagacaacacactccttcagcaccccactgttttagtcacacctt
ccctacaaacacacaaacacacacacacacacacacacagagagacagag
agagagaaacaagagaaagacagagagaccgagacaacgacataaagata
gaccggagagatgtatatgaaaaagctttcagggctgagagatggctcag
cggttaagcgccctgacttgctcttccgagggtcctggagtcaaatccca
gcaaccacacgatggctcacaaccatctgtatgagatctgatgccctcta
tgagattcctgaagtcagctataggtgtacctaaaaaataattataatct
aaaaaaaaaaaaagaaaaagcctgtcagttaggcgagaatgatatttcta
agtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152598230_152599386
seq2: B6Ng01-173M05.b_45_1181

seq1  GAATTCCATAATCCCCCTTGAGGCCACACCCCAAAGATCTAGGGACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATCCCCCTTGAGGCCACACCCCAAAGATCTAGGGACATCT  50

seq1  GATAAATCCTGCCTCATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATCCTGCCTCATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAAC  100

seq1  GTCATGACCAAGAAGCAAGTTGGGGAGGAAAAGGTTTATTCAGCTTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACCAAGAAGCAAGTTGGGGAGGAAAAGGTTTATTCAGCTTACAC  150

seq1  TTCCCACATTGCTGTTCATCACTGAAGGAAGTCAGGACTGGAACTCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATTGCTGTTCATCACTGAAGGAAGTCAGGACTGGAACTCAAGC  200

seq1  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTCCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTCCTTTAC  250

seq1  TGGCTTGCCTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCCTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCAAGAC  300

seq1  TACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCA  350

seq1  CTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCTTCAA  400

seq1  CTGAAGCTCCTTTCTCTTACCACTTAGCCTGCTTTGGGGAGATACACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTCCTTTCTCTTACCACTTAGCCTGCTTTGGGGAGATACACATT  450

seq1  AAGGTAGAGATAGGTTACCCTGACAATTCTGATGTAGTGGTAACTTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGATAGGTTACCCTGACAATTCTGATGTAGTGGTAACTTGCCA  500

seq1  GGAGAATTCTTGAGCATTTTATAAGCATTACATGGGATACCACCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTCTTGAGCATTTTATAAGCATTACATGGGATACCACCACCATG  550

seq1  GTGGGTGTGACCCTGGTGTAACCACTTTGGTTGTCACTGTCCTGGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGACCCTGGTGTAACCACTTTGGTTGTCACTGTCCTGGGGATG  600

seq1  AACCCAGGGCCTTGCACATGCTAGAAAGAACTCTATCGAGTTCTATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGCCTTGCACATGCTAGAAAGAACTCTATCGAGTTCTATCTCC  650

seq1  ACCTCCACAAATTTGTAAACCTCTTGCTTCATTCTCCCAAGTGCTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAAATTTGTAAACCTCTTGCTTCATTCTCCCAAGTGCTGGGGT  700

seq1  TACAGAATATACTACCATGCCAGATGCCCCACCCCCTACTTATCAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATATACTACCATGCCAGATGCCCCACCCCCTACTTATCAGGTAA  750

seq1  AGAAAGCCTGGCACTTAGAGTGACTTACTTACCCCAGGCCGTCTGTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTGGCACTTAGAGTGACTTACTTACCCCAGGCCGTCTGTTGCA  800

seq1  GTCTTGCTCCCAAATACTATACTGTTCTCTGTCCTTGGGCTTAGCTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTCCCAAATACTATACTGTTCTCTGTCCTTGGGCTTAGCTGCTC  850

seq1  TGCTCCACCTATGAGGTGAGCATAGCCGGAGGTGGGAAACCCATCTCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACCTATGAGGTGAGCATAGCCGGAGGTGGGAAACCCATCTCTTA  900

seq1  TGGCCATGCCTTCAGTGGTTAGCTGTGCAGCGTGGCCATCAGTGAAGACC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGCCATGCCTTCAGTGGTTAGCTGTGCAGCGTGCCCATCAGTGAAGACC  950

seq1  ACTATCAGTGAGGACCACTCGTTCTTTATAGTTTGTCTTGAGGTGGCCTG  1000
      ||||||||||| ||||||||||||||||||||||||||||||   |||||
seq2  ACTATCAGTGA-GACCACTCGTTCTTTATAGTTTGTCTTGAG--TGCCTG  997

seq1  GCACAAAGTCTAGGGTAAAAGTGACCT-CTGCCTAGGCCACAGAGATGAC  1049
      |||||||||||||||| |||||||||| |||| |||  ||||||||||||
seq2  GCACAAAGTCTAGGGT-AAAGTGACCTCCTGCTTAG--CACAGAGATGAC  1044

seq1  TCAGTGGTTAAGAGCACTGACTGTTCTTACAGAGGACTCAGGTTCAAACC  1099
      ||| ||  | |||||||||||||||||||| || |||||| |||||||||
seq2  TCATTG--TTAGAGCACTGACTGTTCTTAC-GA-GACTCA-GTTCAAACC  1089

seq1  CCAATGCCCATATACTTCACAATCATCTCTAATTCCAGTCCCAGGGGATC  1149
         ||| |||||||||||| |||||||||||  ||||||||   ||||||
seq2  ---ATG-CCATATACTTCA-AATCATCTCTA--TCCAGTCC--AGGGATC  1130

seq1  TCACACCC  1157
      ||| ||||
seq2  TCA-ACCC  1137

seq1: chr2_152711724_152712887
seq2: B6Ng01-173M05.g_69_1223 (reverse)

seq1  GTACTTAGAAATAATCATTTCTCGCTTAACTGA-AAGCTTTTTCTTTTTT  49
      |||||||||||| |||| ||||||| ||||||| | ||||||||||||||
seq2  GTACTTAGAAAT-ATCA-TTCTCGCCTAACTGACAGGCTTTTTCTTTTTT  48

seq1  TTTTTTTAAGATTTATTAATTATTTCTTAAGTACA-CTATAGCTGACTTC  98
      ||||||| |||||   ||||||||| ||| ||||| ||||||||||||||
seq2  TTTTTTT-AGATT--ATAATTATTTTTTAGGTACACCTATAGCTGACTTC  95

seq1  AGACACTCCATAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCA  148
      ||  |   ||| |||||||||||||||||| |||||||||||||||||||
seq2  AGGAATCTCAT-AGAGGGCATCAGATCTCA-TACAGATGGTTGTGAGCCA  143

seq1  TCGTGTGGTTGCTGGGATTTGAACTCAGGACCCTCGGAAGAGC-AGTCAG  197
      ||||||||||||||||||||||   |||||||||||||||||| ||||||
seq2  TCGTGTGGTTGCTGGGATTTGACTCCAGGACCCTCGGAAGAGCAAGTCAG  193

seq1  GGCGCTTAACCGCTGAGCCATCTCTCCAGCCCTGAAAGCTTTTTCATATA  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCGCTTAACCGCTGAGCCATCTCT-CAGCCCTGAAAGCTTTTTCATATA  242

seq1  CATCTCTCCGTGTCTATCTTTATGTCTGTTTGTCTCTGTCTCTCTGTCTT  297
      |||||||||| |||||||||||||||   ||||||| |||||||||||||
seq2  CATCTCTCCG-GTCTATCTTTATGTC--GTTGTCTCGGTCTCTCTGTCTT  289

seq1  TCTCTTTGTTTCTCTCTCTCTGTCTCTCTGTGTGTGTGTGTGTGTGTGTG  347
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TTGTTTCTCTCTCTCTGTCTCTCTGTGTGTGTGTGTGTGTGTGTG  338

seq1  TTTGTGTGTTTGTAGGGAAGGTGTGACTAAAACAGTGGGGTGCTGAAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTTTGTAGGGAAGGTGTGACTAAAACAGTGGGGTGCTGAAGGA  388

seq1  GTGTGTTGTCTGATCAGCTGCTTTTCAGAATCCTCTGGGCTCTTACATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTCTGATCAGCTGCTTTTCAGAATCCTCTGGGCTCTTACATAG  438

seq1  ATTCCCAGTCTCGGCATTTTGATTTGTTGAGTTGAAGACAGAGAGAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGTCTCGGCATTTTGATTTGTTGAGTTGAAGACAGAGAGAGTGA  488

seq1  AGAGCTTAGGATTACTGACACAGTAAGCAGTTGTGCTGATAATAGTAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAGGATTACTGACACAGTAAGCAGTTGTGCTGATAATAGTAATA  538

seq1  CTTTCTATATACCTTTGAGTGTGTGTGTTGTACTAGGGTGTTTGGGGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATATACCTTTGAGTGTGTGTGTTGTACTAGGGTGTTTGGGGGCT  588

seq1  TTGTTTTGAGACAGGCTCTCCCTATGTAGCCCTGGTTGGCCTCGTGCTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGACAGGCTCTCCCTATGTAGCCCTGGTTGGCCTCGTGCTCA  638

seq1  GAGATCCCTGCCACTCCTCCCGTGTGCTGGGATTAAAGGCGTGCACAGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCTGCCACTCCTCCCGTGTGCTGGGATTAAAGGCGTGCACAGCC  688

seq1  ATGCCTGCCTTGTCCTGAGTTTTACATAGATTATTTTATTTCTCATAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTTGTCCTGAGTTTTACATAGATTATTTTATTTCTCATAACA  738

seq1  ACTGTAAAAGTCTCTGTTCTTAATTTCTGTTTTAAAAACAAGGGACTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAGTCTCTGTTCTTAATTTCTGTTTTAAAAACAAGGGACTCTA  788

seq1  CCACCAGGGTATCTAATAAAGGGAACTGGGCTATGAGTCTGTCACCTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGGTATCTAATAAAGGGAACTGGGCTATGAGTCTGTCACCTCTT  838

seq1  TAACCACTGCATGGTTCCACCCCACATCTCATTGTTCCCATAAGTCATGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGCATGGTTCCACCCCACATCTCATTGTTCCCATAAGTCATGT  888

seq1  TGATGTCTGAGGTCACTGTCATGAGCTACCTGTAGCTTTCATCGGTTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTGAGGTCACTGTCATGAGCTACCTGTAGCTTTCATCGGTTTCA  938

seq1  CTAATTTCAATTCATTTTTAGTTTCTAGAGAAGGAATGAATAAAACAGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCAATTCATTTTTAGTTTCTAGAGAAGGAATGAATAAAACAGAC  988

seq1  AATAGATATATTCTTTTTCTTTTTCTTTTCTTCTCTCCTCCCTCCCATCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATATTCTTTTTCTTTTTCTTTTCTTCTCTCCTCCCTCCCATCC  1038

seq1  TTCCTTTCTTCATTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTCATTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1088

seq1  TGTGTGTGTGTGTGTGTAGCTTTGGCTGTCCTGGAACTCTTTGTATAGAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTAGCTTTGGCTGTCCTGGAACTCTTTGTATAGAC  1138

seq1  CAGGCTGCCCAGAATTC  1164
      |||||||||||||||||
seq2  CAGGCTGCCCAGAATTC  1155