BAC Information

Click to search

BAC

Clone NameB6Ng01-173O24
Chromosome2 (Build37)
Map Location 6,843,919 - 6,875,357
singlet/doubletdoublet
Overlap genenone
Upstream geneDhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173O24.bB6Ng01-173O24.g
ACCGA002151GA002152
length1,1771,009
definitionB6Ng01-173O24.b B6Ng01-173O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,874,210 - 6,875,357)(6,843,919 - 6,844,926)
sequence
gaattccattatttgaagatgggtgcttttgtgtagcaattgaactcttt
taagataaaacctgctatttcctgagttctgtcactgtagagaattggag
ttctgtttggctgtttggggaagcattcatgtcttcagcatttacagagc
aaaggggtagaaatggtttctgtctaagatataattttacaattggaatt
tcttatttgctatgtaaaagttgcacattttgagaggattaaagacacac
atacacagagacacatacacatgagacacacacatacatacagagagaga
gagagagacagagagagagatacagagagagagagagacagagacagaga
cagagacagagacagagacagagagcaggcaaatgagcacatgggggaac
atgcctctcagcttggggagcctaagaattattgcagcctctcaaacaaa
taattttgcttcacagctttttgtctcttagtttcatctgtgttttgaag
gatattgtaaagataaaatgaaatgttgacgtaacccttcatacactaag
acacactcacatgagggaaaagctttgcactacaatgagttgtaccttct
gctcgaccctccactttgaccacctcacctcaaaaaagccaggagaggct
ccctcctgtgttctttgcttttgatggcatcataaactttaccccggatg
atatttgacatggttaagcaagcaagagcatataaagatctgcaatacgt
tctttcttggctgtgaatactttcaagccttgtaaacccttctcagatta
ggtttttgtaaatgtttctgttatgtatttttcttttccccctctctcta
tttgcatccctaaaacttttcatatactctgtcatttcttacttttcatt
aaaggtcataaaacatttatataaaatccagacaagacagtgttcatagc
ccaacagtagaagaattgtagttcactttccaggcccatcccatccctta
acctttggggccttgttcacttcaaaagggaagtggtgtcaaccttaagg
agcgaatgcttgtgctgtcataaatgattgcctaaagaagaatggtactt
gaccatagcctgttcattggatatggaattccgcctttattacaatccag
tattggatcctctccttctttctacac

gaattctttgcactgaccaggaaaaaagtgtctgcttattttgaaatctc
agttgattccatgaagtagcgggtgagaacccatttctacatatacggtt
actattattactgtgtgatctgaagtgctaccttgcttttgcctagaaga
ttttatgattgtgttgtttcaaaagtagcaatggaaaagagtgtcacatt
cagataaaatagttaaagaactattttattttttatttagatgtgttaga
aaaatgcacaccagacaaatcagaagtaccaggctttcttgaagtctcaa
gtttttttttttttttttcttgttttctgaaaggacataaaatcacatct
gtttgaaagaccatggcctcccatgggcctgaccccaaaacaacaagggc
tatgatttgctcactttaggtggccattaaattcttttaagttacaaaag
tatcatttggtaaattaccttttccagggccctaagtgacattttaaagg
tttaaagtattaaatcaccctccagaagtggtcactctaccctgttagcc
actgataacatcaggctaaatagcttcaatttcttttatgctagattttg
atcaacataaaaacgctttttatagacattaccaaatttgctcttaacac
aacagttagggcgagggatgggagtgtcagaaaaggactctagacattct
ctagagacctgggtctcttgaaagtgtagccggagctcttaattgctgag
acattatccgtccaacctccagtctttttcaaatttttttatttgtttgt
ttgtttgtttgttttaagcagggtcattcatgaaactcaccgaataaggc
caggagggggtattcagcaagtctcgtggaatcagtctatctgctttccc
cagcgctgagattaagtgtacaaccccataaaaggttttttaagaaaagg
gggcggggtctgggattgaactcagggttcaagacttgtacagaaaacct
tcccactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6874210_6875357
seq2: B6Ng01-173O24.b_44_1220 (reverse)

seq1  GTGTAG-AAGAAGGAG-GGTTCCAATACTGTGTTTGTAAT-AAGGCTGAA  47
      |||||| ||||||||| || |||||||||| | ||||||| ||||| |||
seq2  GTGTAGAAAGAAGGAGAGGATCCAATACTG-GATTGTAATAAAGGCGGAA  49

seq1  TTCCACTTTTTCAATGGACA-GCTATGTTCCAGTTCACATTTCTCTTTAG  96
      |||||  | | ||||| ||| |||||| || ||| | ||||  |||||||
seq2  TTCCA--TATCCAATGAACAGGCTATGGTCAAGTAC-CATTCTTCTTTAG  96

seq1  --CATCCTTTATG-CAGCAC-AGCA-TCGCTCTTTAAGTTTG-CACCAC-  139
         ||| |||||| |||||| |||| |||||| ||||| ||| |||||| 
seq2  GCAATCATTTATGACAGCACAAGCATTCGCTCCTTAAGGTTGACACCACT  146

seq1  TCCCTTTTG-AGTGA--CAGGCCC--AAAGTTAA-GGAT-GGATGGG-CT  181
      ||||||||| |||||   ||||||  || ||||| |||| ||||||| ||
seq2  TCCCTTTTGAAGTGAACAAGGCCCCAAAGGTTAAGGGATGGGATGGGCCT  196

seq1  GGAAAGTG-ACTAC-ATTC-TCT-CTGTT-GGCTATG-ACACTGTCTTGT  225
      |||||||| ||||| |||| ||| ||||| ||||||| ||||||||||||
seq2  GGAAAGTGAACTACAATTCTTCTACTGTTGGGCTATGAACACTGTCTTGT  246

seq1  CTTGATTTTATAT-AATGTTTTATGA-CTTTAATGAAAAGT-AGAAATGA  272
      || |||||||||| |||||||||||| |||||||||||||| ||||||||
seq2  CTGGATTTTATATAAATGTTTTATGACCTTTAATGAAAAGTAAGAAATGA  296

seq1  CAGAGTATATGAAAAGTTT--AGGATGCAAATAGAGAGAGGGGGAAA--G  318
      |||||||||||||||||||   |||||||||||||||||||||||||   
seq2  CAGAGTATATGAAAAGTTTTAGGGATGCAAATAGAGAGAGGGGGAAAAGA  346

seq1  AAAATACATAACAGAAACATTTAC-AAAACCTAATCTGAGAAGGGTTTAC  367
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAATACATAACAGAAACATTTACAAAAACCTAATCTGAGAAGGGTTTAC  396

seq1  AAGGCTTGAAAGTATTCACAGCCAAGAAAGAACGTATTGCAGATCTTTAT  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAAAGTATTCACAGCCAAGAAAGAACGTATTGCAGATCTTTAT  446

seq1  ATGCTCTTGCTTGCTTAACCATGTCAAATATCATCCGGGGTAAAGTTTAT  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTGCTTGCTTAACCATGTCAAATATCATCCGGGGTAAAGTTTAT  496

seq1  GATGCCATCAAAAGCAAAGAACACAGGAGGGAGCCTCTCCTGGCTTTTTT  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATCAAAAGCAAAGAACACAGGAGGGAGCCTCTCCTGGCTTTTTT  546

seq1  GAGGTGAGGTGGTCAAAGTGGAGGGTCGAGCAGAAGGTACAACTCATTGT  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGGTGGTCAAAGTGGAGGGTCGAGCAGAAGGTACAACTCATTGT  596

seq1  AGTGCAAAGCTTTTCCCTCATGTGAGTGTGTCTTAGTGTATGAAGGGTTA  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAGCTTTTCCCTCATGTGAGTGTGTCTTAGTGTATGAAGGGTTA  646

seq1  CGTCAACATTTCATTTTATCTTTACAATATCCTTCAAAACACAGATGAAA  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAACATTTCATTTTATCTTTACAATATCCTTCAAAACACAGATGAAA  696

seq1  CTAAGAGACAAAAAGCTGTGAAGCAAAATTATTTGTTTGAGAGGCTGCAA  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGACAAAAAGCTGTGAAGCAAAATTATTTGTTTGAGAGGCTGCAA  746

seq1  TAATTCTTAGGCTCCCCAAGCTGAGAGGCATGTTCCCCCATGTGCTCATT  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTAGGCTCCCCAAGCTGAGAGGCATGTTCCCCCATGTGCTCATT  796

seq1  TGCCTGCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCT  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCT  846

seq1  CTCTCTCTGTATCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTATGTATGT  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTATCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTATGTATGT  896

seq1  GTGTGTCTCATGTGTATGTGTCTCTGTGTATGTGTGTCTTTAATCCTCTC  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCATGTGTATGTGTCTCTGTGTATGTGTGTCTTTAATCCTCTC  946

seq1  AAAATGTGCAACTTTTACATAGCAAATAAGAAATTCCAATTGTAAAATTA  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGCAACTTTTACATAGCAAATAAGAAATTCCAATTGTAAAATTA  996

seq1  TATCTTAGACAGAAACCATTTCTACCCCTTTGCTCTGTAAATGCTGAAGA  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGACAGAAACCATTTCTACCCCTTTGCTCTGTAAATGCTGAAGA  1046

seq1  CATGAATGCTTCCCCAAACAGCCAAACAGAACTCCAATTCTCTACAGTGA  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCTTCCCCAAACAGCCAAACAGAACTCCAATTCTCTACAGTGA  1096

seq1  CAGAACTCAGGAAATAGCAGGTTTTATCTTAAAAGAGTTCAATTGCTACA  1117
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGGAAATAGCAGGTTTTATCTTAAAAGAGTTCAATTGCTACA  1146

seq1  CAAAAGCACCCATCTTCAAATAATGGAATTC  1148
      |||||||||||||||||||||||||||||||
seq2  CAAAAGCACCCATCTTCAAATAATGGAATTC  1177


seq1: chr2_6843919_6844926
seq2: B6Ng01-173O24.g_64_1072

seq1  GAATTCTTTGCACTGACCAGGAAAAAAGTGTCTGCTTATTTTGAAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCACTGACCAGGAAAAAAGTGTCTGCTTATTTTGAAATCTC  50

seq1  AGTTGATTCCATGAAGTAGCGGGTGAGAACCCATTTCTACATATACGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCCATGAAGTAGCGGGTGAGAACCCATTTCTACATATACGGTT  100

seq1  ACTATTATTACTGTGTGATCTGAAGTGCTACCTTGCTTTTGCCTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATTACTGTGTGATCTGAAGTGCTACCTTGCTTTTGCCTAGAAGA  150

seq1  TTTTATGATTGTGTTGTTTCAAAAGTAGCAATGGAAAAGAGTGTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATTGTGTTGTTTCAAAAGTAGCAATGGAAAAGAGTGTCACATT  200

seq1  CAGATAAAATAGTTAAAGAACTATTTTATTTTTTATTTAGATGTGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAATAGTTAAAGAACTATTTTATTTTTTATTTAGATGTGTTAGA  250

seq1  AAAATGCACACCAGACAAATCAGAAGTACCAGGCTTTCTTGAAGTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACACCAGACAAATCAGAAGTACCAGGCTTTCTTGAAGTCTCAA  300

seq1  GTTTTTTTTTTTTTTTTTCTTGTTTTCTGAAAGGACATAAAATCACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTCTTGTTTTCTGAAAGGACATAAAATCACATCT  350

seq1  GTTTGAAAGACCATGGCCTCCCATGGGCCTGACCCCAAAACAACAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGACCATGGCCTCCCATGGGCCTGACCCCAAAACAACAAGGGC  400

seq1  TATGATTTGCTCACTTTAGGTGGCCATTAAATTCTTTTAAGTTACAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGCTCACTTTAGGTGGCCATTAAATTCTTTTAAGTTACAAAAG  450

seq1  TATCATTTGGTAAATTACCTTTTCCAGGGCCCTAAGTGACATTTTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGGTAAATTACCTTTTCCAGGGCCCTAAGTGACATTTTAAAGG  500

seq1  TTTAAAGTATTAAATCACCCTCCAGAAGTGGTCACTCTACCCTGTTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTATTAAATCACCCTCCAGAAGTGGTCACTCTACCCTGTTAGCC  550

seq1  ACTGATAACATCAGGCTAAATAGCTTCAATTTCTTTTATGCTAGATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAACATCAGGCTAAATAGCTTCAATTTCTTTTATGCTAGATTTTG  600

seq1  ATCAACATAAAAACGCTTTTTATAGACATTACCAAATTTGCTCTTAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATAAAAACGCTTTTTATAGACATTACCAAATTTGCTCTTAACAC  650

seq1  AACAGTTAGGGCGAGGGATGGGAGTGTCAGAAAAGGACTCTAGACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAGGGCGAGGGATGGGAGTGTCAGAAAAGGACTCTAGACATTCT  700

seq1  CTAGAGACCTGGGTCTCTTGAAAGTGTAGCCGGAGCTCTTAATTGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCTGGGTCTCTTGAAAGTGTAGCCGGAGCTCTTAATTGCTGAG  750

seq1  ACATTATCCGTCCAACCTCCAGTCTTTTTCAAA-TTTTTTATTTGTTTGT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACATTATCCGTCCAACCTCCAGTCTTTTTCAAATTTTTTTATTTGTTTGT  800

seq1  TTGTTTGTTTGTTTTTAAGCAGGGTCATTCATGAAACTCACCGAAT-AGG  848
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  TTGTTTGTTTG-TTTTAAGCAGGGTCATTCATGAAACTCACCGAATAAGG  849

seq1  CCAGGA-GGGGTATTCAGCAAGTCTCGTGG-ATCAGTCTATCTGC-TTCC  895
      |||||| ||||||||||||||||||||||| |||||||||||||| ||||
seq2  CCAGGAGGGGGTATTCAGCAAGTCTCGTGGAATCAGTCTATCTGCTTTCC  899

seq1  CCAGCGCTGAGATTAAGTGTACAACCCCATAAAAGGTTTTTTTAAGAAAA  945
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCGCTGAGATTAAGTGTACAACCCCATAAAAGG-TTTTTTAAGAAAA  948

seq1  GGGGGCGGGGTCTTGGGATTGAACTCAGGGTTC-AGACTTGTACAGGAAA  994
      |||||||||||| |||||||||||||||||||| |||||||||||| |||
seq2  GGGGGCGGGGTC-TGGGATTGAACTCAGGGTTCAAGACTTGTACAGAAAA  997

seq1  CCCTTTCCCACTGA  1008
      ||  ||||||||||
seq2  CC--TTCCCACTGA  1009


| Home | SequenceCutter | Blast | Download |