BAC Information

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BAC

Clone NameB6Ng01-175I16
Chromosome2 (Build37)
Map Location 107,970,441 - 108,144,877
singlet/doubletdoublet
Overlap genenone
Upstream geneKcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I16.bB6Ng01-175I16.g
ACCGA003317GA003318
length1,1921,083
definitionB6Ng01-175I16.b B6Ng01-175I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,970,441 - 107,971,379)(108,143,799 - 108,144,877)
sequence
gaattctcttgtttggacttctgcaggtcctgttcatactgccatcgtac
tgtaatatcatgcatgttgctgtcctgctacatagtgtccagaagacatg
gtttccttgttatcatctatggcctccagctcttacattatttctgacat
tcttcaaaaatgatcactaagccttgggaggtgagcatggggaatatatg
cacatttagtgctttattctcggtattttggaccaactgtaaatctttct
gttgattgtcgtctactgcaaacagaagcttctctaacaagggtataaag
gtgacttaatcagtgagtataatgttaagtcattagaaattagttcaata
ttatgttcctttagtagaataatggtactagattctctactagggcctat
gacctgtctaataacaggttctcaatctgataatagtagcattttgtgaa
atggatttcattttgtgaaatagacctgacatttaattagaaagccatta
attatccctatggtgtttgtagcaatatttcaccagtgtaccgcaggtct
ttccaggactgtcattattgtagcttgcagaattcacaggtgggtaaaac
atgattattttctgccctggtaatgtgcgaatctgggagatgaagcttcc
aggttaccgttggctgaatttctctatggtctctgactgaagtgagaggt
gcctttagcactaggaccttactgtcacattctggagggctacaaggaac
atagcaatggcattgaacccctagggataatatcttgtttacctttgctc
agttaggtctatacaaattcttagatctttaagattttaaattgacagga
aacaggtggcgtcattgtctttgagactccactttccacacagatactta
ggtaaaagctgatagacaacttgtgagggaggtcacattaatatatcatg
tatcaaggatagatggaattttgaagacatcttccctaaattataatgta
actgggaaagtatagctacacctatttgttcaagaaatcttcagttcgat
gtgagacctgcaactagcaataaaggaatatgacttactgagggagccag
gagaatgcacaaatgtatacatgaacaggggacgaactaaggattggtcg
tcagtgccaagcctttaaaatcatacactctcaaggaacatg

gaattctcctgacgaggtgtaaataaggtattgcatagagactgtcattg
cactgatgaggatgccctagtagaagaacttgggatcctgtggtaattat
aattgcctgtgcaaggttaacgctccctatctggacctcaatgcaaatat
gacttgaatcatttatatattttgttttaaagttttcttttctaaaaaca
aaagcaaagtcatgtcctaggaagctttttagctcagtaactgggtcgta
ggactcttgagtcagacttcttcttcatgtactttaaaccaaaatgaggt
tttaacagcttataagaaaagtctagaagaatgaagtttccaagaaaagg
aagtaaacaaggatggatcgtaccatcacctgacccttggacctatattg
gacctatattggatctgtggtgagatttggttggtttgtatttctctaat
tgtgggatgttatggttctgtcattctgctgtcatgtagtaaccaccact
atctacagtgtgaattattgataacctgtttgaaagactatgctatgaga
tgattacagtttacaagcacagcaagcatttacaagcttgacagagactg
agggggtagaacatgtccttacccagtcaacagagtgtagggacagctgt
ttctttagtaatggcatccacggcataggattgattaactttactccttt
ataaacttaattaaaaaacatctgcagctccagtaaagtccccaaggttc
tgacattttcttcatgttgaaatctctttattttattgactgaacttttc
cccagcagctattcttgacaaagtgaacactttgttatgatgcagcaaac
aagggatggggaacaatacctgatgaggttttaatgtaagacactctctc
attttctcctttccccttttcctttacccctcccttctacacaactttcc
atctctccatctttcttctttctttcaactggtaaaacaaaagcctaaat
gacaactaaccaaaaaaataccaatacctaatcaagaagaacaaccaaac
cccttcaaactttccttccacctcctttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107970441_107971379
seq2: B6Ng01-175I16.b_309_1239

seq1  TCTACTGCAAACAGAAGCTTCTCTAACAAGGGTATAAAGGTGACTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCAAACAGAAGCTTCTCTAACAAGGGTATAAAGGTGACTTAATC  50

seq1  AGTGAGTATAATGTTAAGTCATTAGAAATTAGTTCAATATTATGTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATAATGTTAAGTCATTAGAAATTAGTTCAATATTATGTTCCTT  100

seq1  TAGTAGAATAATGGTACTAGATTCTCTACTAGGGCCTATGACCTGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAATAATGGTACTAGATTCTCTACTAGGGCCTATGACCTGTCTAA  150

seq1  TAACAGGTTCTCAATCTGATAATAGTAGCATTTTGTGAAATGGATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTCTCAATCTGATAATAGTAGCATTTTGTGAAATGGATTTCAT  200

seq1  TTTGTGAAATAGACCTGACATTTAATTAGAAAGCCATTAATTATCCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAATAGACCTGACATTTAATTAGAAAGCCATTAATTATCCCTAT  250

seq1  GGTGTTTGTAGCAATATTTCACCAGTGTACCGCAGGTCTTTCCAGGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTAGCAATATTTCACCAGTGTACCGCAGGTCTTTCCAGGACTG  300

seq1  TCATTATTGTAGCTTGCAGAATTCACAGGTGGGTAAAACATGATTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTGTAGCTTGCAGAATTCACAGGTGGGTAAAACATGATTATTTT  350

seq1  CTGCCCTGGTAATGTGCGAATCTGGGAGATGAAGCTTCCAGGTTACCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGTAATGTGCGAATCTGGGAGATGAAGCTTCCAGGTTACCGTT  400

seq1  GGCTGAATTTCTCTATGGTCTCTGACTGAAGTGAGAGGTGCCTTTAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATTTCTCTATGGTCTCTGACTGAAGTGAGAGGTGCCTTTAGCAC  450

seq1  TAGGACCTTACTGTCACATTCTGGAGGGCTACAAGGAACATAGCAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTTACTGTCACATTCTGGAGGGCTACAAGGAACATAGCAATGGC  500

seq1  ATTGAACCCCTAGGGATAATATCTTGTTTACCTTTGCTCAGTTAGGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACCCCTAGGGATAATATCTTGTTTACCTTTGCTCAGTTAGGTCTA  550

seq1  TACAAATTCTTAGATCTTTAAGATTTTAAATTGACAGGAAACAGGTGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCTTAGATCTTTAAGATTTTAAATTGACAGGAAACAGGTGGCG  600

seq1  TCATTGTCTTTGAGACTCCACTTTCCACACAGATACTTAGGTAAAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTTTGAGACTCCACTTTCCACACAGATACTTAGGTAAAAGCTG  650

seq1  ATAGACAACTTGTGAGGGAGGTCACATTAATATATCATGTATCAAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGACAACTTGTGAGGGAGGTCACATTAATATATCATGTATCAAGGAT-  699

seq1  AGATGGAATTTTGAAGACATCTTCCCTAAATTATAAATGTAACTGGGAAA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATGGAATTTTGAAGACATCTTCCCTAAATTAT-AATGTAACTGGGAAA  748

seq1  GTATAGCTACACCTATTTGTTCAAAGAAATCTTCAGTTCGAATGTGAGAC  800
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GTATAGCTACACCTATTTGTTC-AAGAAATCTTCAGTTCG-ATGTGAGAC  796

seq1  CTGCAACTAGCAATAAGGAAATATGACTTTTAACTGAGGGAGCCCAGGGG  850
      |||||||||||||||| | ||||||||||   ||||||||||||    ||
seq2  CTGCAACTAGCAATAAAGGAATATGACTT---ACTGAGGGAGCC---AGG  840

seq1  AGATTGCACAAAATGTAAACATG-ACAGGGAGACAGGAGCAAAAGATTTG  899
      ||| ||||| ||||||| ||||| |||||| |||  || | || || |||
seq2  AGAATGCAC-AAATGTATACATGAACAGGG-GAC--GAACTAAGGA-TTG  885

seq1  GCCGTCAGTTGCAAGCCTTTAAAATCA-----TCTC-AGGAACATG  939
      | |||||||  ||||||||||||||||     |||| |||||||||
seq2  GTCGTCAGTGCCAAGCCTTTAAAATCATACACTCTCAAGGAACATG  931


seq1: chr2_108143799_108144877
seq2: B6Ng01-175I16.g_64_1146 (reverse)

seq1  AAAATAAA-GAGGTGGAAGG-AAGTTTGAAGGGTTTTTGTTGTTCTTCTT  48
      |||||||| ||||||||||| |||||||||||| ||| ||||||||||||
seq2  AAAATAAAGGAGGTGGAAGGAAAGTTTGAAGGGGTTTGGTTGTTCTTCTT  50

seq1  GTTTGTTTATTTGTTTTTTTTTTGTTTTGTTGTCATTTTGGCTTTTGTTT  98
      | ||   || ||| | |||||||| || |||||||||| |||||||||||
seq2  GATTAGGTA-TTGGTATTTTTTTGGTTAGTTGTCATTTAGGCTTTTGTTT  99

seq1  TACCAGTTGAAGGAAAGAAGAAAGATGGAGAGATGGAAAG-TGTGTAGAA  147
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TACCAGTTGAAAGAAAGAAGAAAGATGGAGAGATGGAAAGTTGTGTAGAA  149

seq1  GGGAGGGGTAAAGGAAAAGGGGAAAGGAGAAAATGAGAGAGTGTCTTACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTAAAGGAAAAGGGGAAAGGAGAAAATGAGAGAGTGTCTTACA  199

seq1  TTAAAACCTCATCAGGTATTGTT-CCCATCCCTTGTTTGCTGCATCATAA  246
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAAACCTCATCAGGTATTGTTCCCCATCCCTTGTTTGCTGCATCATAA  249

seq1  CAAAGTGTTCACTTTGTC-AGAATAGCTGCTGGGGAAAAGTTCAGTCAAT  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAAGTGTTCACTTTGTCAAGAATAGCTGCTGGGGAAAAGTTCAGTCAAT  299

seq1  AAAATAAAGAGATTTCAACATGAAGAAAATGTCAGAACCTTGGGGACTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAGATTTCAACATGAAGAAAATGTCAGAACCTTGGGGACTTT  349

seq1  ACTGGAGCTGCAGATGTTTTTTAATTAAGTTTATAAAGGAGTAAAGTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCTGCAGATGTTTTTTAATTAAGTTTATAAAGGAGTAAAGTTAA  399

seq1  TCAATCCTATGCCGTGGATGCCATTACTAAAGAAACAGCTGTCCCTACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTATGCCGTGGATGCCATTACTAAAGAAACAGCTGTCCCTACAC  449

seq1  TCTGTTGACTGGGTAAGGACATGTTCTACCCCCTCAGTCTCTGTCAAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGACTGGGTAAGGACATGTTCTACCCCCTCAGTCTCTGTCAAGCT  499

seq1  TGTAAATGCTTGCTGTGCTTGTAAACTGTAATCATCTCATAGCATAGTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCTTGCTGTGCTTGTAAACTGTAATCATCTCATAGCATAGTCT  549

seq1  TTCAAACAGGTTATCAATAATTCACACTGTAGATAGTGGTGGTTACTACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGGTTATCAATAATTCACACTGTAGATAGTGGTGGTTACTACA  599

seq1  TGACAGCAGAATGACAGAACCATAACATCCCACAATTAGAGAAATACAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGAATGACAGAACCATAACATCCCACAATTAGAGAAATACAAA  649

seq1  CCAACCAAATCTCACCACAGATCCAATATAGGTCCAATATAGGTCCAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAATCTCACCACAGATCCAATATAGGTCCAATATAGGTCCAAGG  699

seq1  GTCAGGTGATGGTACGATCCATCCTTGTTTACTTCCTTTTCTTGGAAACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGATGGTACGATCCATCCTTGTTTACTTCCTTTTCTTGGAAACT  749

seq1  TCATTCTTCTAGACTTTTCTTATAAGCTGTTAAAACCTCATTTTGGTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTAGACTTTTCTTATAAGCTGTTAAAACCTCATTTTGGTTTA  799

seq1  AAGTACATGAAGAAGAAGTCTGACTCAAGAGTCCTACGACCCAGTTACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGAAGAAGAAGTCTGACTCAAGAGTCCTACGACCCAGTTACTG  849

seq1  AGCTAAAAAGCTTCCTAGGACATGACTTTGCTTTTGTTTTTAGAAAAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAAGCTTCCTAGGACATGACTTTGCTTTTGTTTTTAGAAAAGAA  899

seq1  AACTTTAAAACAAAATATATAAATGATTCAAGTCATATTTGCATTGAGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAACAAAATATATAAATGATTCAAGTCATATTTGCATTGAGGT  949

seq1  CCAGATAGGGAGCGTTAACCTTGCACAGGCAATTATAATTACCACAGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGGGAGCGTTAACCTTGCACAGGCAATTATAATTACCACAGGAT  999

seq1  CCCAAGTTCTTCTACTAGGGCATCCTCATCAGTGCAATGACAGTCTCTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCTTCTACTAGGGCATCCTCATCAGTGCAATGACAGTCTCTAT  1049

seq1  GCAATACCTTATTTACACCTCGTCAGGAGAATTC  1079
      ||||||||||||||||||||||||||||||||||
seq2  GCAATACCTTATTTACACCTCGTCAGGAGAATTC  1083


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