BAC Information

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BAC

Clone NameB6Ng01-176B22
Chromosome2 (Build37)
Map Location 161,827,213 - 161,828,318
singlet/doubletsinglet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B22.b
ACCGA003743
length1,095
definitionB6Ng01-176B22.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgaaataagaaaaaaaattacacaaagtgtttagctcagtac
gagctgttctgaatgctcaaaaattattgatcactgtcgaactatttctg
ttcttagtttccttatgtttctggtgcggtatccccattttcagagaaac
aattgaaacagattgatcacatgacactcataaaataagaacaatcacgg
ctttgggcattgaagtccccattgatattgataattagatgtaacaagtc
ttatttaagagtcaccctggtcagcccatgttccctgtcccttcctctcc
cacagcccactttcttcttccttccactttcagcctctctctctctaata
tctacttgccagagtttcaaaagaatcctcaggctagactctggtgtatc
aaagcttcccagcacaggcaggaccaaggagtaaggcagagagtttctaa
cagtctcctttcctgtcctaaagagatttgttgaaaacatctgcctcccc
atctttattccaggtgagaactggcctacccttttcctacagtctcccca
gtcaggtgacctgcccttgggcattctatgagactataaagccatgcaca
gagaaaacaagaatgttcataaagatcattgagtagagtatggcttgatc
caacttccagcttcagtcagatgagaggaggcagcttggctgctccttgg
atggcatttattacactcacaagtcaataatgatcaccccagtgatagaa
gaagagtttgaagaggcctatgagcctaccagtgtgcaaacaatgacaca
aggatggaaggaatgggcagagtggacacgtgaccttgaatcctcaccgt
gaccctgcagtaggtccagtgggagccatcacattttacaacaggaaagc
caggccgactaccatcggatcccattcacgtaccaaacccacccagagca
cacagcacactgcgctgctttccctgggccaggctaccttcctttcttac
ttccagtttggcacactaaaggcatctggaaagcctatcagctccctctc
agcttcagaaaatgagcaagaatcagacgggtgctacagagtctg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161827213_161828318
seq2: B6Ng01-176B22.b_46_1140 (reverse)

seq1  CAGACTCTGTAGCACCCCTTCTGGAATCCTGCTCATTTTTCTGAAGGCCT  50
      |||||||||||||| ||| ||| || || |||||| ||||||||||  ||
seq2  CAGACTCTGTAGCA-CCCGTCT-GATTCTTGCTCA-TTTTCTGAAG--CT  45

seq1  GAGAGGGAGCTGATAGGGCTTCCAGATGCCTTTTAGTTGGTTGCCAAACT  100
      |||||||||||||||||  ||||||||||| ||||||    |||||||||
seq2  GAGAGGGAGCTGATAGGCTTTCCAGATGCC-TTTAGT---GTGCCAAACT  91

seq1  GGGAAGTAAGAAAGG-AGGTAGCCTGGCCCAGGGAAAGCAGCGCAGTGTG  149
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -GGAAGTAAGAAAGGAAGGTAGCCTGGCCCAGGGAAAGCAGCGCAGTGTG  140

seq1  CTGTGTGGCTCTGGGTGGGTTTGGTACGTGAATGGGATCCGATGGTAGTC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGT-GCTCTGGGTGGGTTTGGTACGTGAATGGGATCCGATGGTAGTC  189

seq1  GGCCTGGCTTTCCTGTTTGTAAAATGTGATGGCTCCCACTGGACCTACTG  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTTTCCTG-TTGTAAAATGTGATGGCTCCCACTGGACCTACTG  238

seq1  CAGGGTCACGGTGAGGATTCAAGGTCACGTGTCCACTCTGCCCATTCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCACGGTGAGGATTCAAGGTCACGTGTCCACTCTGCCCATTCCTT  288

seq1  CCATCCTTGTGTCATTGTTTGCACACTGGTAGGCTCATAGGCCTCTTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTGTGTCATTGTTTGCACACTGGTAGGCTCATAGGCCTCTTCAA  338

seq1  ACTCTTCTTCTATCACTGGGGTGATCATTATTGACTTGTGAGTGTAATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTCTATCACTGGGGTGATCATTATTGACTTGTGAGTGTAATAA  388

seq1  ATGCCATCCAAGGAGCAGCCAAGCTGCCTCCTCTCATCTGACTGAAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCAAGGAGCAGCCAAGCTGCCTCCTCTCATCTGACTGAAGCTG  438

seq1  GAAGTTGGATCAAGCCATACTCTACTCAATGATCTTTATGAACATTCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGATCAAGCCATACTCTACTCAATGATCTTTATGAACATTCTTG  488

seq1  TTTTCTCTGTGCATGGCTTTATAGTCTCATAGAATGCCCAAGGGCAGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTGCATGGCTTTATAGTCTCATAGAATGCCCAAGGGCAGGTC  538

seq1  ACCTGACTGGGGAGACTGTAGGAAAAGGGTAGGCCAGTTCTCACCTGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTGGGGAGACTGTAGGAAAAGGGTAGGCCAGTTCTCACCTGGAA  588

seq1  TAAAGATGGGGAGGCAGATGTTTTCAACAAATCTCTTTAGGACAGGAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGGGAGGCAGATGTTTTCAACAAATCTCTTTAGGACAGGAAAG  638

seq1  GAGACTGTTAGAAACTCTCTGCCTTACTCCTTGGTCCTGCCTGTGCTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTTAGAAACTCTCTGCCTTACTCCTTGGTCCTGCCTGTGCTGGG  688

seq1  AAGCTTTGATACACCAGAGTCTAGCCTGAGGATTCTTTTGAAACTCTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGATACACCAGAGTCTAGCCTGAGGATTCTTTTGAAACTCTGGC  738

seq1  AAGTAGATATTAGAGAGAGAGAGGCTGAAAGTGGAAGGAAGAAGAAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATATTAGAGAGAGAGAGGCTGAAAGTGGAAGGAAGAAGAAAGTG  788

seq1  GGCTGTGGGAGAGGAAGGGACAGGGAACATGGGCTGACCAGGGTGACTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGGAGAGGAAGGGACAGGGAACATGGGCTGACCAGGGTGACTCT  838

seq1  TAAATAAGACTTGTTACATCTAATTATCAATATCAATGGGGACTTCAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGACTTGTTACATCTAATTATCAATATCAATGGGGACTTCAATG  888

seq1  CCCAAAGCCGTGATTGTTCTTATTTTATGAGTGTCATGTGATCAATCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCCGTGATTGTTCTTATTTTATGAGTGTCATGTGATCAATCTGT  938

seq1  TTCAATTGTTTCTCTGAAAATGGGGATACCGCACCAGAAACATAAGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGTTTCTCTGAAAATGGGGATACCGCACCAGAAACATAAGGAAA  988

seq1  CTAAGAACAGAAATAGTTCGACAGTGATCAATAATTTTTGAGCATTCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACAGAAATAGTTCGACAGTGATCAATAATTTTTGAGCATTCAGA  1038

seq1  ACAGCTCGTACTGAGCTAAACACTTTGTGTAATTTTTTTTCTTATTTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCGTACTGAGCTAAACACTTTGTGTAATTTTTTTTCTTATTTCAG  1088

seq1  TGAATTC  1106
      |||||||
seq2  TGAATTC  1095